mRNA_H-elongata_contig70591.14716.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig70591.14716.1
Unique NamemRNA_H-elongata_contig70591.14716.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig70591.14716.1 vs. uniprot
Match: D8LF54_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LF54_ECTSI)

HSP 1 Score: 253 bits (646), Expect = 1.740e-82
Identity = 130/186 (69.89%), Postives = 149/186 (80.11%), Query Frame = 1
Query:    7 SEQGRFYHTLEHLADMLEGAERDFKEICQPRLVQLAIFFHDAVYDPKSSSNEEDSEALFRKFSQAARMKPSDITIVSNYIIATKLHDVSGSDDTDLRAFIDLDMAVLGRERTAYLIYASQQIREEYAHVPTDTYCQKRAQVLRDFLAT-PIFATDLYRKELEPAARMNLDAEIAMLCAGAIPSNTT 561
            SE+GR YHT EH+ADMLE A+RDF  +  PRLVQLAIFFHD VYDPKS SNEEDSEALFRKFS+A  +  SD T VS+YIIATK H VSGSDD DLRAFIDLDMAV+GRER+ YL YASQ IREEY HVP DTYC+KRA++LR+FL+T  IFATD Y++  E  AR N+ AE+ ML AG IP+  T
Sbjct:   37 SEEGRHYHTFEHVADMLEQADRDFPNLRHPRLVQLAIFFHDVVYDPKSGSNEEDSEALFRKFSEAVGLSASDSTTVSDYIIATKRHSVSGSDDQDLRAFIDLDMAVVGRERSGYLTYASQ-IREEYIHVPADTYCKKRAEILREFLSTGSIFATDEYQRTFEAKARENVAAEVEMLNAGVIPTGCT 221          
BLAST of mRNA_H-elongata_contig70591.14716.1 vs. uniprot
Match: B7FQJ3_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FQJ3_PHATC)

HSP 1 Score: 138 bits (347), Expect = 4.860e-37
Identity = 79/190 (41.58%), Postives = 112/190 (58.95%), Query Frame = 1
Query:    7 SEQGRFYHTLEHLADMLE--------GAERDFKEICQPRLVQLAIFFHDAVYDPKSSSNEEDSEALFRKFSQAARMKPSDI-TIVSNYIIATKLHDVSGSDDTDLRAFIDLDMAVLGRERTAYLIYASQQIREEYAHVPTDTYCQKRAQVLRDFLATPIFATDLYRKELEPAARMNLDAEIAMLCAGAIP 549
            +E  RFYHT  HL +ML         G      E  + + + L+IFFHDA+Y+ +SSSNEE+S  LF++F +  +   + + T+V  +I+ATK H  S +    L  F+DLDMAVLG+   +Y+ YAS  IR EY  +P DTYCQKRA VL  F+   +F T +     E  A+ N+  E+ +L AG+IP
Sbjct:   61 TETTRFYHTAVHLEEMLHFFRVLEERGCMSGVSET-ERQAILLSIFFHDAIYESRSSSNEENSAQLFQEFCRDTKSPDAVVNTLVDEFILATKTHMTSDNHTVALATFLDLDMAVLGKHLESYISYASM-IRREYDFIPHDTYCQKRADVLEAFMGNRVFGTKVMYDAFEERAKENVRYEVDLLRAGSIP 248          
BLAST of mRNA_H-elongata_contig70591.14716.1 vs. uniprot
Match: A0A210PWH6_MIZYE (Uncharacterized protein n=1 Tax=Mizuhopecten yessoensis TaxID=6573 RepID=A0A210PWH6_MIZYE)

HSP 1 Score: 135 bits (340), Expect = 2.160e-36
Identity = 80/186 (43.01%), Postives = 109/186 (58.60%), Query Frame = 1
Query:    7 SEQGRFYHTLEHLADMLEGAERDFKEI--CQPRLVQLAIFFHDAVYDPKSSSNEEDSEALFRKFSQAAR-MKPSDITIVSNYIIATKLHD-VSGSDDTDLRAFIDLDMAVLGRERTAYLIYASQQIREEYAHVPTDTYCQKRAQVLRDFLAT-PIFATDLYRKELEPAARMNLDAEIAMLCAGAIP 549
            S+  R YHTL+HL +M +  +     I  C PRLV LA+FFHD +Y+PK   NEE S   F +++     +   D   V ++I+ TK H  + G +  D   F+D+DMAVLGR    Y  YA+Q IR EY HVP + Y  KRAQ+L DFL   P+F+T L++K+ E  A+ NL  EI  L   +IP
Sbjct:   37 SDPARHYHTLQHLREMFQHFDFAGGHITFCYPRLVTLAVFFHDIIYEPKKPDNEERSADKFEEYAAEVNVLSDVDCKKVKDWILLTKSHTALKGDNSGDEHYFLDIDMAVLGRPVADYDEYANQ-IRAEYIHVPEEIYRSKRAQILEDFLTRLPLFSTKLFQKQFEDRAKTNLIREIGRLRDNSIP 221          
BLAST of mRNA_H-elongata_contig70591.14716.1 vs. uniprot
Match: A0A1Z5KJ21_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KJ21_FISSO)

HSP 1 Score: 128 bits (321), Expect = 1.980e-33
Identity = 83/182 (45.60%), Postives = 103/182 (56.59%), Query Frame = 1
Query:   19 RFYHTLEHLADML---EGAERDFKEIC-QPRLVQLAIFFHDAVYDPKSSSNEEDSEALFRKFSQAARMKPSDITIVSNYIIATKLHDVSGSDDTDLRAF-IDLDMAVLGRERTAYLIYASQQIREEYAHVPTDTYCQKRAQVLRDFLATP-IFATDLYRKELEPAARMNLDAEIAMLCAGAI 546
            R YHT  H+ +ML         F     Q R V LAIFFHDA+YD  S++NEEDS  LF+ F            +V N I+ATK H      DT   AF +DLD++VLG+   AY  YA   IR+EY+HVP +TYCQKRA +L  FL    I+ T L+R+  E  AR NL AEI +L  G I
Sbjct:   56 RHYHTAVHVQEMLLYFHSLRPQFLLSAEQQRAVILAIFFHDAIYDATSNTNEEDSVKLFQSFETNG--------LVDNMILATKSHHSGDLSDTSAVAFFLDLDLSVLGKTEEAYQQYAIL-IRKEYSHVPQETYCQKRADILETFLQQQNIYKTSLFREMFEERARSNLAAEIRLLRQGVI 228          
BLAST of mRNA_H-elongata_contig70591.14716.1 vs. uniprot
Match: UPI001EE5EEA2 (uncharacterized protein LOC124256753 n=1 Tax=Haliotis rubra TaxID=36100 RepID=UPI001EE5EEA2)

HSP 1 Score: 126 bits (317), Expect = 4.770e-33
Identity = 81/174 (46.55%), Postives = 105/174 (60.34%), Query Frame = 1
Query:   19 RFYHTLEHLADMLEGAERDFKEICQPRLVQLAIFFHDAVYDPKSSSNEEDSEALFRKFSQAARMKP--SDITIVSNYIIATKLHDVSGSDDTDLRAFIDLDMAVLGRERTAYLIYASQQIREEYAHVPTDTYCQKRAQVLRDFLATP-IFATDLYRKELEPAARMNLDAEIAML 531
            R YHTL+H+ADM        + +     V LAIFFHD VYDPKSSSNE+DS  +FR F+  A +     D TI    I AT  H   G+   DL+ F+D DMAVLGR    Y  YA +QI+ EY H+ T T+  KRAQVL++FLA   IF+T+ + +  E  AR N+  EI++L
Sbjct:   40 RHYHTLDHIADMFVCYNNWKQRLGNCSAVALAIFFHDIVYDPKSSSNEQDSIQMFRDFAHEAELDAYLRDATI--QLIDATITHVAVGN--RDLKFFLDFDMAVLGRPADGYSDYA-RQIQREYCHLDTATFNSKRAQVLQNFLARDHIFSTEEFTQLYEEKARSNMAREISVL 208          
BLAST of mRNA_H-elongata_contig70591.14716.1 vs. uniprot
Match: A0A6U6CET0_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A6U6CET0_9STRA)

HSP 1 Score: 128 bits (322), Expect = 4.860e-33
Identity = 89/210 (42.38%), Postives = 119/210 (56.67%), Query Frame = 1
Query:    7 SEQGRFYHTLEHLADMLEG---------AER---------DFKEICQPRLVQLAIFFHDAVYDPKSSSNEEDSEALFRKF-------SQAARMKPSDI-TIVSNYIIATKLHDVSGSDDTD--LRAFIDLDMAVLGRERTAYLIYASQQIREEYAHVPTDTYCQKRAQVLRDFLATPIFATDLYRKELEPAARMNLDAEIAMLCAGAIPS 552
            SE GR YHTL HL ++            AER         + KE+     V LA+FFHDAVYD KSS+NEEDS AL+R+F       +  ++M+  +I +++ +YI+ATK H V  SD  D  L AF+D DM+VL +   AY  YA   IR EY HVP + YC+KRA++L  F +          KELE  AR+NL  E+ +L  G IP+
Sbjct:   75 SEPGRAYHTLVHLEEIFSYLDIILPAAIAERSEQSSIASINTKEVYAA--VSLAVFFHDAVYDAKSSTNEEDSAALYREFQIGKDGVAYHSKMELKNIGSLIVHYILATKSHFVQLSDREDPVLLAFLDADMSVLAKCHEAYDAYAGC-IRYEYQHVPREVYCKKRAEILEGFASKDDLFFGKRMKELEMKARINLTREVELLRKGIIPN 281          
BLAST of mRNA_H-elongata_contig70591.14716.1 vs. uniprot
Match: A0A6J8CXA8_MYTCO (Uncharacterized protein n=1 Tax=Mytilus coruscus TaxID=42192 RepID=A0A6J8CXA8_MYTCO)

HSP 1 Score: 130 bits (327), Expect = 2.100e-32
Identity = 73/178 (41.01%), Postives = 104/178 (58.43%), Query Frame = 1
Query:    7 SEQGRFYHTLEHLADMLEGAERDFKEICQPRLVQLAIFFHDAVYDPKSSSNEEDSEALFRKFSQ--AARMKPSDITIVSNYIIATKLHDVSGSDDTDLRAFIDLDMAVLGRERTAYLIYASQQIREEYAHVPTDTYCQKRAQVLRDFLATP-IFATDLYRKELEPAARMNLDAEIAML 531
            SE  R+YHTL HL DM         ++ +P LV LAIFFHD +YDPK + NEE S  LF ++++     +K  +I+ V ++I+ TK H V      D   F+D+DMAVLGR+   Y  YA Q IREEY H+P   Y  KR++VL +F     +++T  +    +  A+ N+  EIA+L
Sbjct:  281 SESHRYYHTLNHLIDMFHLFNGHKTKMSEPDLVSLAIFFHDIIYDPKKNDNEERSADLFVQYTRECCVNLKEDEISKVKDWILLTKTHQVKDVGSEDYHYFLDIDMAVLGRQEKGYKEYADQ-IREEYKHIPDKEYKTKRSKVLSNFCKRDRLYSTKEFFDNYDNQAKENMAKEIAIL 457          
BLAST of mRNA_H-elongata_contig70591.14716.1 vs. uniprot
Match: UPI001425AC27 (uncharacterized protein LOC117106315 n=1 Tax=Anneissia japonica TaxID=1529436 RepID=UPI001425AC27)

HSP 1 Score: 124 bits (310), Expect = 7.280e-32
Identity = 78/186 (41.94%), Postives = 105/186 (56.45%), Query Frame = 1
Query:    7 SEQGRFYHTLEHLADMLEGAERDFKEICQPRLVQLAIFFHDAVYDPKSSSNEEDSEALFRKFSQAARMKPS----DITIVSNYIIATKLHDV------SGSDDTDLRAFIDLDMAVLGRERTAYLIYASQQIREEYAHVPTDTYCQKRAQVLRDFLATP-IFATDLYRKELEPAARMNLDAEIAML 531
            SE+ R YHTL H+  M E        + +P LV  ++FFHD +YDPKSS NEE+S  +F +F  AA   P     DIT VSN+I+ T+ H        +   + D   F+D DM VLG     Y  YA+Q IR EY HV   T+ ++R++VL+ FL  P I+AT ++R + E  AR NL  EI  L
Sbjct:   40 SEERRHYHTLHHIRKMNEAVSSVASNLKRPDLVYWSVFFHDIIYDPKSSKNEEESAKVFEEF--AAECLPEAPTCDITDVSNWILMTRSHITHIHLTPNKFANEDKYYFLDADMEVLGWANPEYDEYANQ-IRSEYTHVAEKTFRERRSKVLKSFLKLPNIYATKIFRDKYEAQARSNLQREIDRL 222          
BLAST of mRNA_H-elongata_contig70591.14716.1 vs. uniprot
Match: A0A1Z5KTL6_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KTL6_FISSO)

HSP 1 Score: 123 bits (309), Expect = 1.290e-31
Identity = 81/182 (44.51%), Postives = 105/182 (57.69%), Query Frame = 1
Query:   19 RFYHTLEHLADMLEGAERDFKEIC--QPRLVQLAIFFHDAVYDPKSSSNEEDSEALFRKFSQAARMKPSDITIVSNYIIATKLH---DVSGSDDTDLRAFIDLDMAVLGRERTAYLIYASQQIREEYAHVPTDTYCQKRAQVLRDFLATP-IFATDLYRKELEPAARMNLDAEIAMLCAGAI 546
            R YHT  HL +ML        +    Q R V LAIFFHDA+YD  S++NEEDS  LF+ F   A        +V + I+ATK H   D +  D + +  F+DLD++VLG+   AY  YA   I++EY+HVP +TYCQKRA +L  FL    I+ T L+R+  E  AR NL AEI  L  G I
Sbjct:   58 RHYHTAVHLQEMLLYFHFLRPQFLAEQQRAVILAIFFHDAIYDATSNTNEEDSVTLFQSFETNA--------LVDDMILATKSHHSVDPNMKDTSVIAFFLDLDLSVLGKTEEAYQRYAIL-IQKEYSHVPHETYCQKRADILETFLQQQNIYKTALFREMFEERARSNLAAEIRCLRQGII 230          
BLAST of mRNA_H-elongata_contig70591.14716.1 vs. uniprot
Match: A0A8B6EH18_MYTGA (Uncharacterized protein n=2 Tax=Mytilus galloprovincialis TaxID=29158 RepID=A0A8B6EH18_MYTGA)

HSP 1 Score: 122 bits (305), Expect = 1.570e-31
Identity = 65/144 (45.14%), Postives = 87/144 (60.42%), Query Frame = 1
Query:    7 SEQGRFYHTLEHLADMLEGAERDFKEICQPRLVQLAIFFHDAVYDPKSSSNEEDSEALFRKFSQ--AARMKPSDITIVSNYIIATKLHDVSGSDDTDLRAFIDLDMAVLGRERTAYLIYASQQIREEYAHVPTDTYCQKRAQVL 432
            SE  R+YHTL HL +M +       ++  P LV LAIFFHD +YDP  S NEE S  LF +++   +  +K  +I+ V ++I+ TK H V+     D   F+D+DMAVLGR+   Y  YA Q IREEY HVP   Y  KR++VL
Sbjct:   40 SESHRYYHTLNHLIEMFDHLNGHKTKLSDPDLVSLAIFFHDIIYDPMKSDNEERSAELFVQYTTECSVNLKEEEISKVKDWILLTKTHQVNDEGSEDYHYFLDIDMAVLGRQDKGYKEYADQ-IREEYKHVPEKEYKTKRSKVL 182          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig70591.14716.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LF54_ECTSI1.740e-8269.89Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
B7FQJ3_PHATC4.860e-3741.58Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
A0A210PWH6_MIZYE2.160e-3643.01Uncharacterized protein n=1 Tax=Mizuhopecten yesso... [more]
A0A1Z5KJ21_FISSO1.980e-3345.60Uncharacterized protein n=1 Tax=Fistulifera solari... [more]
UPI001EE5EEA24.770e-3346.55uncharacterized protein LOC124256753 n=1 Tax=Halio... [more]
A0A6U6CET0_9STRA4.860e-3342.38Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A6J8CXA8_MYTCO2.100e-3241.01Uncharacterized protein n=1 Tax=Mytilus coruscus T... [more]
UPI001425AC277.280e-3241.94uncharacterized protein LOC117106315 n=1 Tax=Annei... [more]
A0A1Z5KTL6_FISSO1.290e-3144.51Uncharacterized protein n=1 Tax=Fistulifera solari... [more]
A0A8B6EH18_MYTGA1.570e-3145.14Uncharacterized protein n=2 Tax=Mytilus galloprovi... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig70591contigH-elongata_contig70591:238..1561 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score255.0
Seed ortholog evalue2.8e-65
Seed eggNOG ortholog2880.D8LF54
EggNOG free text desc.protein conserved in bacteria
EggNOG OGs2RZFA@2759,COG4339@1
Ec32 ortholog descriptionPredicted HD phosphohydrolase
Ec32 orthologEc-06_001740.1
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size579
Cds size579
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig70591.14716.1prot_H-elongata_contig70591.14716.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig70591 238..1561 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931104.187177-CDS-H-elongata_contig70591:237..3651622931104.187177-CDS-H-elongata_contig70591:237..365Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70591 238..365 +
1691679699.6335666-CDS-H-elongata_contig70591:237..3651691679699.6335666-CDS-H-elongata_contig70591:237..365Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70591 238..365 +
1622931104.2110226-CDS-H-elongata_contig70591:644..8821622931104.2110226-CDS-H-elongata_contig70591:644..882Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70591 645..882 +
1691679699.6519244-CDS-H-elongata_contig70591:644..8821691679699.6519244-CDS-H-elongata_contig70591:644..882Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70591 645..882 +
1622931104.230101-CDS-H-elongata_contig70591:1348..15611622931104.230101-CDS-H-elongata_contig70591:1348..1561Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70591 1349..1561 +
1691679699.6625354-CDS-H-elongata_contig70591:1348..15611691679699.6625354-CDS-H-elongata_contig70591:1348..1561Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70591 1349..1561 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig70591.14716.1

>prot_H-elongata_contig70591.14716.1 ID=prot_H-elongata_contig70591.14716.1|Name=mRNA_H-elongata_contig70591.14716.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=193bp
RPSEQGRFYHTLEHLADMLEGAERDFKEICQPRLVQLAIFFHDAVYDPKS
SSNEEDSEALFRKFSQAARMKPSDITIVSNYIIATKLHDVSGSDDTDLRA
FIDLDMAVLGRERTAYLIYASQQIREEYAHVPTDTYCQKRAQVLRDFLAT
PIFATDLYRKELEPAARMNLDAEIAMLCAGAIPSNTTVGDKT*
back to top

mRNA from alignment at H-elongata_contig70591:238..1561+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig70591.14716.1 ID=mRNA_H-elongata_contig70591.14716.1|Name=mRNA_H-elongata_contig70591.14716.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1324bp|location=Sequence derived from alignment at H-elongata_contig70591:238..1561+ (Himanthalia elongata Himel1 dioecious)
CGACCCAGCGAGCAAGGCCGCTTTTACCACACTTTGGAGCACTTGGCAGA TATGTTGGAGGGCGCAGAAAGAGATTTCAAAGAGATCTGTCAACCACGGC TCGTTCAGCTGGCGATCTTCTTCCACGAGTGAGTACTGGTAACGGTAACC ACTGTAACTGTAAATGTAACTAGTGCGCTTTATCTGCCGTTGTTAAAGTG AGACGCGGTCTTTCTATAGACAAGTACTTCACTAAGTTTCCGTACATCGT AGGACAGCTGGCAGCAGTCTCCGGGGGCATAAAATATAGTACCCGCAACG GGTCTTCTTGTGCATTCTCACTTTGCCTACTATTCGCATCTCATTGGCTC TGGCGCGAACATTCAAACTACTTGCCTGTGTCCCCTTCAAAACACACAAA TCAGCAGCGCTGTCTACGACCCGAAGAGCAGCAGCAACGAGGAGGACAGC GAAGCCCTCTTTCGAAAATTTTCGCAAGCGGCGCGAATGAAACCTTCGGA CATAACTATCGTGTCGAACTACATCATCGCCACCAAACTGCACGACGTTT CAGGCTCTGATGATACGGACCTGCGCGCTTTCATCGATCTTGACATGGCC GTCTTGGGAAGGGAGCGCACTGCCTATTTAATATATGCCTCGCAGGTAAA ATGGGGTAGGCAGCACAGCAGCGAGTTCCTTCTCGTCCCCAAAGGGCACT TATTCGATATTCAGGATTTTCGCCGCCTGGGGAGATTGTGACAACCCAAC GCTAGACAAAAATGCGACATCCTTTTTAATTTAATTTTGTTGTGAAATCG TTCCAACCCTCCGAATATAACACACCTTTTTAGCGCCGTGAGAAGTGCAG TCCAGGGGACCAACTATTGTCAGGTTTGAATGTATACATTGCTACCTTTG AGCACAAAATCATCACACTAATAATGAATCGTGTTCCACAATAATAAGTT AGTTCATCGGGTCAACGTTACATACCTGCAATCACACTCTGAGCGAGATC TTGCATGTATTATGCGCTGGTGATTGTCCATTTAATGAGCATTGATCGAG GTATCCCCCTTACCCATTTTTACATCTTCCCCTCTGCTGTTGTTACGAAC TCCTTCGGGAGCAGATCCGGGAAGAGTACGCGCACGTGCCGACTGACACG TACTGCCAGAAGAGAGCTCAAGTTCTTCGAGACTTCCTCGCGACCCCGAT TTTCGCGACTGATTTGTATCGGAAAGAGTTGGAGCCTGCTGCGCGAATGA ACTTGGATGCCGAGATAGCAATGCTGTGCGCAGGGGCTATTCCATCGAAT ACCACCGTTGGTGACAAGACTTAA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig70591:238..1561+

>mRNA_H-elongata_contig70591.14716.1 ID=mRNA_H-elongata_contig70591.14716.1|Name=mRNA_H-elongata_contig70591.14716.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1158bp|location=Sequence derived from alignment at H-elongata_contig70591:238..1561+ (Himanthalia elongata Himel1 dioecious)
CGACCCAGCGAGCAAGGCCGCTTTTACCACACTTTGGAGCACTTGGCAGA
TATGTTGGAGGGCGCAGAAAGAGATTTCAAAGAGATCTGTCAACCACGGC
TCGTTCAGCTGGCGATCTTCTTCCACGACGACCCAGCGAGCAAGGCCGCT
TTTACCACACTTTGGAGCACTTGGCAGATATGTTGGAGGGCGCAGAAAGA
GATTTCAAAGAGATCTGTCAACCACGGCTCGTTCAGCTGGCGATCTTCTT
CCACGACGCTGTCTACGACCCGAAGAGCAGCAGCAACGAGGAGGACAGCG
AAGCCCTCTTTCGAAAATTTTCGCAAGCGGCGCGAATGAAACCTTCGGAC
ATAACTATCGTGTCGAACTACATCATCGCCACCAAACTGCACGACGTTTC
AGGCTCTGATGATACGGACCTGCGCGCTTTCATCGATCTTGACATGGCCG
TCTTGGGAAGGGAGCGCACTGCCTATTTAATATATGCCTCGCAGCGCTGT
CTACGACCCGAAGAGCAGCAGCAACGAGGAGGACAGCGAAGCCCTCTTTC
GAAAATTTTCGCAAGCGGCGCGAATGAAACCTTCGGACATAACTATCGTG
TCGAACTACATCATCGCCACCAAACTGCACGACGTTTCAGGCTCTGATGA
TACGGACCTGCGCGCTTTCATCGATCTTGACATGGCCGTCTTGGGAAGGG
AGCGCACTGCCTATTTAATATATGCCTCGCAGCAGATCCGGGAAGAGTAC
GCGCACGTGCCGACTGACACGTACTGCCAGAAGAGAGCTCAAGTTCTTCG
AGACTTCCTCGCGACCCCGATTTTCGCGACTGATTTGTATCGGAAAGAGT
TGGAGCCTGCTGCGCGAATGAACTTGGATGCCGAGATAGCAATGCTGTGC
GCAGGGGCTATTCCATCGAATACCACCGTTGGTGACAAGACTTAACAGAT
CCGGGAAGAGTACGCGCACGTGCCGACTGACACGTACTGCCAGAAGAGAG
CTCAAGTTCTTCGAGACTTCCTCGCGACCCCGATTTTCGCGACTGATTTG
TATCGGAAAGAGTTGGAGCCTGCTGCGCGAATGAACTTGGATGCCGAGAT
AGCAATGCTGTGCGCAGGGGCTATTCCATCGAATACCACCGTTGGTGACA
AGACTTAA
back to top