mRNA_H-elongata_contig7059.14715.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig7059.14715.1
Unique NamemRNA_H-elongata_contig7059.14715.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig7059.14715.1 vs. uniprot
Match: D7G453_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G453_ECTSI)

HSP 1 Score: 175 bits (444), Expect = 3.180e-48
Identity = 76/100 (76.00%), Postives = 91/100 (91.00%), Query Frame = 2 
Query:  110 VSGVGGIGSNALLVLSGLLVVKGLLLPEDIRHLSFCPSEDPVRGRDTLPWRMMVDSGRECGTIREVMTKYVTAPVVFPGTPEWGMMLNVKEDRAKSAWLE 409
            +SGVG +GSN LL+++ ++VVKGLLLPE++RHL FCP+EDP+RGRDTLPWRMM++SGRECGTI EVMTKYVTAP+ FPGTPEWGMMLN KED AK AWL+
Sbjct:  110 MSGVGSVGSNVLLLVASVMVVKGLLLPENVRHLGFCPTEDPIRGRDTLPWRMMIESGRECGTIPEVMTKYVTAPLAFPGTPEWGMMLNTKEDLAKDAWLQ 209
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7059.14715.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G453_ECTSI3.180e-4876.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig7059contigH-elongata_contig7059:4118..9420 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-02_002210.1
Exons4
Model size1595
Cds size399
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig7059.14715.1prot_H-elongata_contig7059.14715.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig7059 5348..9407 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931104.015826-UTR-H-elongata_contig7059:4117..43871622931104.015826-UTR-H-elongata_contig7059:4117..4387Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7059 4118..4387 -
1691679699.5572746-UTR-H-elongata_contig7059:4117..43871691679699.5572746-UTR-H-elongata_contig7059:4117..4387Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7059 4118..4387 -
1622931104.0325625-UTR-H-elongata_contig7059:4434..53471622931104.0325625-UTR-H-elongata_contig7059:4434..5347Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7059 4435..5347 -
1691679699.5676396-UTR-H-elongata_contig7059:4434..53471691679699.5676396-UTR-H-elongata_contig7059:4434..5347Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7059 4435..5347 -
1622931104.1166964-UTR-H-elongata_contig7059:9407..94201622931104.1166964-UTR-H-elongata_contig7059:9407..9420Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7059 9408..9420 -
1691679699.6187027-UTR-H-elongata_contig7059:9407..94201691679699.6187027-UTR-H-elongata_contig7059:9407..9420Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7059 9408..9420 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931104.0537062-CDS-H-elongata_contig7059:5347..54551622931104.0537062-CDS-H-elongata_contig7059:5347..5455Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7059 5348..5455 -
1691679699.5773401-CDS-H-elongata_contig7059:5347..54551691679699.5773401-CDS-H-elongata_contig7059:5347..5455Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7059 5348..5455 -
1622931104.0697498-CDS-H-elongata_contig7059:8046..81491622931104.0697498-CDS-H-elongata_contig7059:8046..8149Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7059 8047..8149 -
1691679699.5891376-CDS-H-elongata_contig7059:8046..81491691679699.5891376-CDS-H-elongata_contig7059:8046..8149Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7059 8047..8149 -
1622931104.086706-CDS-H-elongata_contig7059:9219..94071622931104.086706-CDS-H-elongata_contig7059:9219..9407Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7059 9220..9407 -
1691679699.6084137-CDS-H-elongata_contig7059:9219..94071691679699.6084137-CDS-H-elongata_contig7059:9219..9407Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7059 9220..9407 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig7059.14715.1

>prot_H-elongata_contig7059.14715.1 ID=prot_H-elongata_contig7059.14715.1|Name=mRNA_H-elongata_contig7059.14715.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=133bp
MTESLLTAKKGGVADPDAGSSIDAKKEKKIGNVSGVGGIGSNALLVLSGL
LVVKGLLLPEDIRHLSFCPSEDPVRGRDTLPWRMMVDSGRECGTIREVMT
KYVTAPVVFPGTPEWGMMLNVKEDRAKSAWLE*
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mRNA from alignment at H-elongata_contig7059:4118..9420-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig7059.14715.1 ID=mRNA_H-elongata_contig7059.14715.1|Name=mRNA_H-elongata_contig7059.14715.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=5303bp|location=Sequence derived from alignment at H-elongata_contig7059:4118..9420- (Himanthalia elongata Himel1 dioecious)
AGGCTCGACCACCATGACAGAGTCGCTGCTCACCGCGAAGAAGGGTGGTG
TAGCGGATCCCGATGCAGGGTCCAGTATCGACGCGAAGAAAGAGAAGAAG
ATCGGAAACGTCAGCGGGGTCGGGGGGATCGGCAGCAACGCGCTCCTGGT
CCTCAGTGGGTTACTGGTGGTGAAGGGCTTGCTCCTTCCTGAGGATATCC
GGCGAGTGTCTTGCCCTTCCATTATCTCGAGCGCGCTACTCCTTCGAACG
CGCACACGTGCTGTTTGTAATATCTCACACGTCTCTGCGGGGCGAGGGGT
TTGTATGTTGTGTCTGGCGTGCAGGGTTAAGTTTCAGACATCCCCACCCT
TGGTTCTAGTTTTCCCGTGATAAGCAACTGCGCGACCACCAGTAGCACAT
AGCTACTGCGGTCTAGAGACTCGTTCGCCGCCTGGTGCTGTCTACGGACA
GCGACCTTGCGGATTCCTTGTATGGCCTTGTGTAATCCGTCACCGATAAC
ATCGATATAGCATTCAACAGCCACATTGGCCCAACGTGTGTCAATGCTGT
GTGTATGCGCGTGTGTGTATTTATTAAATTGCATATAACCGCGCAATCCG
GCCCTGTCATGCTATTTAGTCCTTTTAGGCTACTCTCGCATTGATCGATA
CTCCCTTCCAATGGGGGATTCAATCATATTTGCTACAAAAACTTTATATG
AGACGTGACAAAGGAGACATACTCTCTCTACATTTCGTATCTAAGCCATC
AATACTCAATACTCAATAATCAATAATTTGCGCTGTGTGTGTGTGTTTAT
TAAATTGCACATAACCGCGCATTCCGGCTCTGTCATGCTAGCTCTTCTAG
GCTACTCTAGCATTGATTCTCCCAATGGGGGATCAATAATATTTCCCACA
AAAACCTCTGATCAGACGTGACTTGTGTGTGTTTTCTTTCTTTCTATACA
TTTATTGACCTTTCTGCTGACGAGGCAATTCAACGCAGCGCCAATTTATC
AATCAATTCCACCTACTGGGCCATTGTCATCCTTTGCCTTCGTCTGGTCC
TTCGTGTGGTTCAAAATAATCTGCCCATGTTTAACCGATTCACGCCTACA
GTATGCTTTTGTTAAACGCCTACAGTATGCTTATGGGAGAGAAGAAGAAT
GGCATAATGCTTGACCGGGCTGTGCTGCAAACCTGCCCCTCGCTCACGGA
ACTTGCCGCAAAGTCCAGTCCCACGCCTAAGCGCTTGACCCTCTCAACTT
TGCTCCCCTCTACGTTACCAGGCACCTTTCGTTCTGTCCTAGCGAGGACC
CCGTCAGGGGAAGGGACACCCTACCTTGGAGAATGATGGTTGACTCGGGA
AGAGAATGCGGCACCATACGCGAGGTAATACACCGTATCCCACCAAGGCG
TTCCTCAAGCGACCACGGAGGGCACAACATAAGCGGCCTCGTTTGATTCG
GACAGACGCGAACGGCTCTCTCGGGGGTAGAGGCTATAAATATAACCAGC
TTTAATAAACTCAATATTGATCACACCATTTAAAAAAAGCACGAACTAAT
TCCAACCCTCCGAACATCCACGCCTTCTTAGCACCATGAGAGGTGCACTC
CAGGGGACCAACTATCGTCAGGTTCGAATGTGTACATTACTACCTTTGAG
CACAAAATCGTCACATGGGATTAATCGTGTTCCCCAATAGTTATAAATAG
TTCATTGGGTTGACTGTATAATGTCGGGGATCCCATCATTATTATCCCGT
ACACTTACATCATTCATCATGTGGGGGCTATGACTGCCAAACCAGAGTAC
CATACTACAGCCCAGAGAGGAGGGGGGTTGAGAGAACGGGGAATATCGAA
TGTCATAAGCATTGATAGAACCAGAAGCCCTATTTTCGATTTATTCTTCA
TTTTTACCGATGGGGTAGAGTATTATATTATATCATTCAATGTGCTAGGG
TACATCGTTACCATTCCCGTCATCCCAGTATACCATTATCCCGTGGTCCT
AAGTGATCAACCCATCCCTCTCCCCCTCTCCCCGGATAACGCCTATTATT
GTCTATGATTGCAAGATAATAACAGCACTCCTACACATCGTCATACAATT
AACAATGGTAGGACTTTGCTTAGACTACCTGGTATACAGTAGATTATATA
CTATATACTATAGACTATATACTATTACCCCTATAGAAATAAAAGAACCA
TCCTCCTAATAATCGAACTAATGATTCCCGTACTGACGACCTGTTTGACT
ACATCATACATTCATAGTAAGACAATCAGCATTGATGTAACCAGTATGAA
TATAATCATTATGAAAATAAGGTATCACCATTATTCAATATATTCGAACC
TGACGATAATTGGTCCCCTGGCCTGCACCTCTCACGGGGCTAAGAAGGCG
TGGATGTTCGGAGAGTTGGAATTAGTTCATACTTTAAAAAAAGGAAAATA
TAATACAGTACAGAGCTAATGTAATTAGTATCAATAACATGAGTACTATT
AATATTGTTAGTACTATTTAGCAGTACTGTGGTCTAGTTCTATTATAGTT
ATAACCAACACAATTACCCGCCCGGGTAGAGTATCTAATAGTGCGGAAAT
AATTAGTTCGAACCCCATCAGGATTGTTTTTGGCTTGGTTGATTACATCT
GCAGCGGTAATATTCTATAGCCTAGTCTATACTCTAGTATGTAGTCTATC
TATAACGTTAGAACGGGAGGAATCAAAGTTCAACAATTTTTGATTGGTTG
ACGAGGTGTACATGAGGAGTGCTATGAATCACTTGCATCGAGTTAAAAAA
AATCGTCTACAGGAGGCGTGAACCAGGGAAATACGGGTGGATCGACCCCT
TAGGATTACCACGGCAGGCGGGATGGATGGGATGGGCAACGTTGCAGTAG
GTGGCATTAGTAACCTACCATGTTGAATATAACCATAAACTTCAACTATT
AATATTCATGTATAGAAAGTGAAAAATATATATAGCTCTAGAGCCTACCA
CTAGATGTTGGCAAAATCATCGGTATCAATACATTCAGTTCAGGGTTTAA
ATCATATTATCAGTGGAGTCGAATGCGCCTGGTGTGGAGGCGATGGGGCG
GTTTCGAGTGCATCATTGGATGCCTGTAAAACGCAGCCATTACGTATGCA
CTCAGGCATGGGCCCACGCACGTCTCAGCCACCAGTGTCGAGGGGATCAC
TTTTAGAAGGGAGCAGTTTGTTCTCGTTTGATCGTCAATACTAAACCACA
CAAGTTCGGCTTCGACGCGGTAACTCGTTGAGAGAACCGCGCTGAACCTA
TAAATATATGGTTGTTAAAGCCTCGCCATTGTTCCTGCTGACCCAAAAGC
CACAACTTGCTTCTATCGATGCTGGTCTACTAATCAACTATTAATATCGT
AGTATTTCAATACTTCCTCCTCCTACTCCTCTTAATAATACTACTAATAT
AATATTGCTATTACTATCTGTACTATAATACTACTGTTGTAATATTGCTA
TTACTATCTGTACTATAATACTACTATTATAATATTGCTATTACTATCTG
TACTATAATACTACTATTATAATATTGCTATTACTATCTGTACTATAATA
CTACTATTATAATATTGCTATTGCTAATATTACTATTACTATACTTCACT
AACCACTCCCCCTGCTGATTTCAGCCCGTAATATAGTTATTAGTAACACT
AACATTAACATATTATTAGTAACACTAACATTAACATTATTATTGTGACC
ATTGATGCTTACTCCTGCTTATTCCTATTGTTCCTGCTCATTCCTGCTTT
CTGATAGTTGGTCCCCTGGATTGCACTTACGGTGACAAGAAGGTGTGGAT
GTTCGGAGAGTTAGAATGAGCTTAAAGTATTTTAAATAAAAATAATATGA
CGTCTATTACTACGTATTTACCATTCCTTCGACTAATAATAATAATGTTA
ATAATTATATCACAGGTGATGACCAAATACGTCACCGCGCCCGTGGTGTT
TCCTGGGACACCGGAATGGGGGATGATGCTCAACGTCAAAGAAGACAGGG
CGAAAAGCGCCTGGCTGGAGTAGCGCGTAAATTGTATCGGTCCTGCGGAG
AAGCTAACATGCTGCCGTGCCGCGGGGCGTAGACGTGCGCCCGCGCACGT
GAGTTCACGAAAACGGTTGTTGATGTCGAGGGAACGGTGTCCCACTTACG
GGAGATTCCATGACACGTTGGGAGGGTCAAGATGACTCCAGAAAAACTAA
GCGACACAACCGGCAGCCAAAACTGGGCCAATCGCTCCCTGTTCGACTGC
ACGAACACCATCGCAGGACGGATTATTTGTTGCTTCGCAAGTACATTCCT
GAGGTGTGAATGCGTGTTGTGGTGGTGTCACAAGGTGCAGTGCAGCTTGG
ACAACCGATAAGGATAAGGTTCCCCGAGGAAAGAAATAGAGAAAAGTACT
CCTGGGCTGCACCGAAGGATAAACGAAGTTTGTGTCCATTGGTGGTTGTT
TGGATCGAGATTTTTCAGTGAAATTTTGTTGATCGATTGGCGCGCTGACG
TGTGATCGAGAGTACGTTAGGCCACCTCCATGCTACACCAAAAGGTAGAC
CCCCGAGTTCGATCAAATAATGTGATCGATCAAGTCACCCGTGTTGCAGC
GAGAGTTTTTTCGGTATCTTTCTTTCATTCGCGTCCCGGTGAACTAGAGG
ACGAACGCGCTCCCGGGGTAAGTCCGCTGGCCCTCAGGCGCTATAATTTC
CGCATCAAATCGCTCAGGACTGGTTAGTAAGATCGCCGCGGAGAGCGCTT
CGCTCACACAGCCTTCTTTGTGCTCGCTTCGAACGCGGACGCAATCATGG
AGCATGCGTTGCCATTGATTGCTTCACCAACCTTGGAAAACGTATTTTGT
TGCACTCCGTGGCCGCTGTCAACGCAGAGTCTAAGCCACCAAACCGCAGC
CAGATTGTCGTCCCGCCCTCCGCCCTTAGCACTGGCTGTAGTAATCCTGG
AAAGCGTGCGAACGCCCCGCAGAGCGGGTCCTCGGTACGGTTTTATGAGC
CGGTCACCTTTCGAAACAAACTGCTTGAGCTTGGCGCCCAGCGGAGAATA
TAGCCGATGGAAAACGTGAAAGGCGTTTTAGCAGAGGAAATTGACGCCGC
TTCGATGACGACGGTCGTCACACGATTATCACTTCATGGGACGCGTCGCG
GCATAAAGTTGCGCACGTGAGTGTAAGCGTGTACGGTAATTGAAACAGGT
TGAGACTCCAGCGAGGGGCAAATGGTAAAGGGGAAGCAATAGGATGAATG
GCC
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Coding sequence (CDS) from alignment at H-elongata_contig7059:4118..9420-

>mRNA_H-elongata_contig7059.14715.1 ID=mRNA_H-elongata_contig7059.14715.1|Name=mRNA_H-elongata_contig7059.14715.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=798bp|location=Sequence derived from alignment at H-elongata_contig7059:4118..9420- (Himanthalia elongata Himel1 dioecious)
ATGACAGAGTCGCTGCTCACCGCGAAGAAGGGTGGTGTAGCGGATCCCGA
TGCAGGGTCCAGTATCGACGCGAAGAAAGAGAAGAAGATCGGAAACGTCA
GCGGGGTCGGGGGGATCGGCAGCAACGCGCTCCTGGTCCTCAGTGGGTTA
CTGGTGGTGAAGGGCTTGCTCCTTCCTGAGGATATCCGATGACAGAGTCG
CTGCTCACCGCGAAGAAGGGTGGTGTAGCGGATCCCGATGCAGGGTCCAG
TATCGACGCGAAGAAAGAGAAGAAGATCGGAAACGTCAGCGGGGTCGGGG
GGATCGGCAGCAACGCGCTCCTGGTCCTCAGTGGGTTACTGGTGGTGAAG
GGCTTGCTCCTTCCTGAGGATATCCGGCACCTTTCGTTCTGTCCTAGCGA
GGACCCCGTCAGGGGAAGGGACACCCTACCTTGGAGAATGATGGTTGACT
CGGGAAGAGAATGCGGCACCATACGCGAGGCACCTTTCGTTCTGTCCTAG
CGAGGACCCCGTCAGGGGAAGGGACACCCTACCTTGGAGAATGATGGTTG
ACTCGGGAAGAGAATGCGGCACCATACGCGAGGTGATGACCAAATACGTC
ACCGCGCCCGTGGTGTTTCCTGGGACACCGGAATGGGGGATGATGCTCAA
CGTCAAAGAAGACAGGGCGAAAAGCGCCTGGCTGGAGTAGGTGATGACCA
AATACGTCACCGCGCCCGTGGTGTTTCCTGGGACACCGGAATGGGGGATG
ATGCTCAACGTCAAAGAAGACAGGGCGAAAAGCGCCTGGCTGGAGTAG
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