mRNA_H-elongata_contig7057.14713.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig7057.14713.1 vs. uniprot
Match: D7G6W1_ECTSI (Spindle pole body component n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6W1_ECTSI) HSP 1 Score: 255 bits (651), Expect = 4.260e-75 Identity = 161/306 (52.61%), Postives = 193/306 (63.07%), Query Frame = 1
Query: 1 QAPGSAGNGIDAALKFQDLHGRLRLLNCVKKRGPMLHTLYALMGTGTLE------RRQGVG---MAQMLSRAFSEPVAALTGSNHVAR---PRTALALSTNEA-HGGRESNGISREQWRADMTKRSGGPA---RVPVG-------SEVTERALLRGILYAFQGIDSQYIKYCVEESRYAIDPRLRLGRSQREIVSRMLEMGWLFKTVMMYCENIGSPDP-LGSSRTQQAFVFSLKEDMTEYYRLIAVLGAQLNLDAAKAAEGSFESRGVTTVTEGLTLKRLAVWVVDPMERLKQMATLVSAAAKLK 846
+ P S+ +G++AAL+F DLH RL+LL +K R PMLH L+AL TGT GV + QM R FSEP A L+G HV P TA A + HGG SNG T+ GG A R V +EVTER LL+GILYAFQGIDSQYIKYC EES Y +DPRLRLG QR +V+ MLEMGWLF TV+ Y +++ + +G R QQAFVFSLKED+TEYYRLIAVLGAQLNL++ G+ TEGLTL+RL VWV DPM+RL MATLV+AAA+LK
Sbjct: 96 KTPSSSSSGVEAALRFDDLHRRLKLLAGLKNRAPMLHLLHALTDTGTAAXXXXXXNHHGVAPPAIPQMPPRVFSEPAAGLSGIGHVVGQGLPATATASVGGDGYHGGGVSNGREPVGEGRRHTEAMGGRAGRHRSVVSRGMPRRTTEVTERTLLKGILYAFQGIDSQYIKYCEEESGYVLDPRLRLGLKQRAMVTEMLEMGWLFTTVVRYNQSVDAGSAGVGPGRIQQAFVFSLKEDLTEYYRLIAVLGAQLNLESEGVGVGAGG-------TEGLTLQRLFVWVKDPMKRLNVMATLVAAAAQLK 394
BLAST of mRNA_H-elongata_contig7057.14713.1 vs. uniprot
Match: A0A835YR49_9STRA (Spindle pole body component n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YR49_9STRA) HSP 1 Score: 124 bits (311), Expect = 3.200e-28 Identity = 73/170 (42.94%), Postives = 106/170 (62.35%), Query Frame = 1
Query: 340 GGPARVPVGSEVTERALLRGILYAFQGIDSQYIKYCVEESRYAIDPRLRLGRSQREIVSRMLEMGWLFKTVMMYCEN-IGSPDPLGSSRTQQAFVFSLKEDMTEYYRLIAVLGAQLNLDAAKAAEGSFESRGVTTVTEGLTLKRLAVWVVDPMERLKQMATLVSAAAKLK 846
G A+ V S+ TERALLR +LYA QGID Q+++Y +A+DP L + + R++V R+ EMGWLF V Y E + + + +G R AF SL++++T+Y+RL+AV+ AQL A+ +G E LTL+RLA+W VDPMERL+ MATL+ + L+
Sbjct: 212 GTSAQHGVLSDATERALLRDVLYALQGIDGQHVRYDPGSQAFAVDPSLSVSPATRDLVLRLCEMGWLFMHVTQYVEQTLAAGEAVGHVRL--AFAQSLQDELTDYFRLLAVMEAQLG--GAEGDQGG----------ECLTLRRLALWSVDPMERLRLMATLIESVGTLQ 367
BLAST of mRNA_H-elongata_contig7057.14713.1 vs. uniprot
Match: C1EDY5_MICCC (Gamma-tubulin complex component (Fragment) n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1EDY5_MICCC) HSP 1 Score: 121 bits (303), Expect = 3.380e-27 Identity = 90/283 (31.80%), Postives = 141/283 (49.82%), Query Frame = 1
Query: 34 AALKFQDLHGRLRLLNCVKKRGPMLHTLYALMGTGTLERRQ------GVGMAQMLSRAFSEPV---AALTGSNHVARPRTALALSTNEAHGGRESNGISREQWRADMTKRSGGPARVPVGSEVTERALLRGILYAFQGIDSQYIKYCVEESRYAIDPRLRLGRSQREIVSRMLEMGWLFKTVMMYCENIGSPDPLG----SSRTQQAFVFSLKEDMTEYYRLIAVLGAQLNLDAAKAAEGSFESRGVTTVTEG--LTLKRLAVWVVDPMERLKQMATLVSAAA 837
AA+KF +LH RL +K R LH L + E R G+G +R ++P+ AA G +A P A +L+ + + G+ RA + A + E+ E+ L+R +L+A QGID ++I+Y + + Y +DP + R++ ++ E+GWLF+ V +G D G +QAF +++ ++ +YYRLIAVL AQ + A A E G T G LTL+RL+VW+ +P+ RL+ +A LV AAA
Sbjct: 38 AAVKFAELHRRLAQQPGLKARWATLHALLRVSEDRRAEDRAVVPAGGGIGAGAATARHIADPLSAAAAAGGLPALADPDPARSLAAGDG----STLGLDHPGSRALAYRELAAEAETNL--EIGEQELVRDVLFACQGIDGRHIRYNPQMASYVVDPAAPVRPGARDLARKLTELGWLFRRVRAA---LGGVDEAGLGGDGGSVRQAFRAAVQAELADYYRLIAVLEAQAQVPMASALEAPTTGTGGGTAGGGTYLTLRRLSVWLAEPLRRLRLLAVLVDAAA 311
BLAST of mRNA_H-elongata_contig7057.14713.1 vs. uniprot
Match: A0A433QZS3_9FUNG (Spindle pole body component n=2 Tax=Jimgerdemannia flammicorona TaxID=994334 RepID=A0A433QZS3_9FUNG) HSP 1 Score: 120 bits (300), Expect = 8.760e-27 Identity = 65/158 (41.14%), Postives = 97/158 (61.39%), Query Frame = 1
Query: 370 EVTERALLRGILYAFQGIDSQYIKYCVEESRYAIDPRLRLGRSQREIVSRMLEMGWLFKTVMMYCENIGSPDPLGSSRTQQAFVFSLKEDMTEYYRLIAVLGAQLNLDAAKAAEGSFESRGVTTVTEGLTLKRLAVWVVDPMERLKQMATLVSAAAKL 843
EV+E ALLR ++ FQGID +Y+K+ + Y ID ++ + RS R+++ R+ E+GWL+K V M+ +G Q+F +L+ ++T+YYRLIAVL AQ+ D A +RG + T+GL+LKRL VW D M+RL+ M+ LV A L
Sbjct: 261 EVSETALLRDAIFMFQGIDGRYVKFAEDAGSYVIDNKVAIPRSTRDLIHRLSELGWLYKRVHMFVRVRADDTSIGL--VGQSFCSALQRELTDYYRLIAVLEAQIAKDDAS-------NRGGSVTTKGLSLKRLLVWTQDSMQRLRLMSVLVDVCAVL 409
BLAST of mRNA_H-elongata_contig7057.14713.1 vs. uniprot
Match: A0A6L2PLU2_COPFO (Uncharacterized protein n=1 Tax=Coptotermes formosanus TaxID=36987 RepID=A0A6L2PLU2_COPFO) HSP 1 Score: 117 bits (294), Expect = 5.920e-26 Identity = 87/285 (30.53%), Postives = 145/285 (50.88%), Query Frame = 1
Query: 46 FQDLHGRLRLLNCVKKRGPMLHTLYAL--MGTGTLERRQGVGMAQMLS-----------RAFSEP-VAALTGSNHVARPRTAL-ALSTNEAHGGRESNGISREQWRADMTKRSGGPARVP--------VGSEVTERALLRGILYAFQGIDSQYIKYCVEESRYAIDPRLRLGRSQREIVSRMLEMGWLFKTVMMYCENIGSPDPLGSSRTQQAFVFSLKEDMTEYYRLIAVLGAQLNLDAAKAAEGSFESRGVTTVTEGLTLKRLAVWVVDPMERLKQMATLVSA 831
F DLH +L+ +K R +L L + M + V MA++++ F P +++ + ++ A P + +S++ A ++ +G+ + R T +P V SEV+E LL+ ++Y+FQG++ +Y+K Y +DP++R RS R +V R+ E+GWL V +CEN + LG Q+ + +L+E++TEYYRL+AVL +Q+ SFE R T+GLTL RL+VW +P R+K +A +V A
Sbjct: 79 FSDLHRKLQAWTFLKNRQAILSFLMHVSDMPQTSHTASSSVLMAELITAESDASKAVQPNCFGLPHLSSSSLTSREAAPNVPIHVVSSSGADWHQDKHGMEHDSRRCQSTLSQSSGFHMPPDANLNKSVSSEVSESELLQELIYSFQGVNGKYLKLSPVSRGYKLDPKVRAKRSIRRLVLRLAELGWLHNQVRQHCENAAALKSLGL--IGQSLIAALREELTEYYRLVAVLQSQV----------SFEERPPCH-TDGLTLCRLSVWTFEPQRRMKCLAAVVEA 350
BLAST of mRNA_H-elongata_contig7057.14713.1 vs. uniprot
Match: A0A507EGI6_9FUNG (Spindle pole body component n=1 Tax=Powellomyces hirtus TaxID=109895 RepID=A0A507EGI6_9FUNG) HSP 1 Score: 115 bits (288), Expect = 3.330e-25 Identity = 83/274 (30.29%), Postives = 135/274 (49.27%), Query Frame = 1
Query: 28 IDAALKFQDLHGRLRLLNCVKKRGPMLHTLYALMGTGTLERRQGVGMAQMLSRAFSEPVAALTGSNHVARPRTA----LALSTNEAHGGRESNGISREQWRADMTKRSGGPARVPVGSEVTERALLRGILYAFQGIDSQYIKYCVEESRYAIDPRLRLGRSQREIVSRMLEMGWLFKTVMMYCENIGSPDPLGSSRTQQAFVFSLKEDMTEYYRLIAVLGAQLNLDAAKAAEGSFESRGVTTVTEGLTLKRLAVWVVDPMERLKQMATLVSAAA 837
+D A++F +LH +L + + + ++ L AL + +R QG + + + + + ++ + RTA + +T H I A TK VP S + E LR ++Y FQGID +Y+KY +YAIDP +++ + +REI+ +++EMGWL++ VM + + + G R Q+F +L +M++YYRLIA+L +G G T LTLKRL VW DP++RL+ M LV A
Sbjct: 118 LDKAIRFSNLHQKLTGKSSLTNQWASVYFLLAL--SQQTDRLQGRESRESVLSLGLQRLPTMKTTSKRSDLRTASPSVVPDTTRNGH-------IHASTSAATHTK-----GLVPEPSGIAESEWLRDVVYVFQGIDGKYMKYDAPNEKYAIDPEVQVTKPEREILLKLVEMGWLYRQVMEFVDKHKNDTSEGLIR--QSFCSALAREMSDYYRLIAIL------------QGQISPSGENTTASPLTLKRLYVWTQDPLKRLRIMGVLVELCA 363
BLAST of mRNA_H-elongata_contig7057.14713.1 vs. uniprot
Match: A0A8H7UHR0_9FUNG (Spindle pole body component n=1 Tax=Umbelopsis vinacea TaxID=44442 RepID=A0A8H7UHR0_9FUNG) HSP 1 Score: 113 bits (282), Expect = 1.980e-24 Identity = 61/155 (39.35%), Postives = 90/155 (58.06%), Query Frame = 1
Query: 370 EVTERALLRGILYAFQGIDSQYIKYCVEESRYAIDPRLRLGRSQREIVSRMLEMGWLFKTVMMY-CENIGSPDPLGSSRTQQAFVFSLKEDMTEYYRLIAVLGAQLNLDAAKAAEGSFESRGVTTVTEGLTLKRLAVWVVDPMERLKQMATLVSA 831
+V E A+LR I++ FQGID YIK+ E Y ID + + RS RE++ ++ E+GWL+K + + NI D Q+F SL+ +M +YY+LIAVL AQ++ K + T T LTLKRL VW+ D ++RL+ M+ L+ A
Sbjct: 144 QVPEAAILRDIMFIFQGIDGTYIKFDAESDAYVIDDMVGISRSARELIHKLTELGWLYKRIQAFIATNI---DNASIGLVGQSFCSSLQREMNDYYKLIAVLEAQISKSEGKDPTFLADDLDTTLSTNSLTLKRLVVWMRDSLQRLRLMSVLIDA 295
BLAST of mRNA_H-elongata_contig7057.14713.1 vs. uniprot
Match: A0A2H9ZUR9_9ASPA (Gamma-tubulin complex component n=1 Tax=Apostasia shenzhenica TaxID=1088818 RepID=A0A2H9ZUR9_9ASPA) HSP 1 Score: 113 bits (282), Expect = 2.040e-24 Identity = 90/278 (32.37%), Postives = 134/278 (48.20%), Query Frame = 1
Query: 34 AALKFQDLHGRLRLLNCVKKRGPMLH--TLYALMGTGTLERRQGV-----GMAQMLSRAFSEPVAALTGSNHVARPRTALALSTNEAHGGRESNGISREQWRADMTKRSGGPARVPVGSEVTERALLRGILYAFQGIDSQYIKYCVEESRYAIDPRLRLGRSQREIVSRMLEMGWLFKTVMMYCENIGSPDPLGSSRTQQAFVFSLKEDMTEYYRLIAVLGAQLNLDAAKAAEGSFESRGVTTVTEGLTLKRLAVWVVDPMERLKQMATLVSAAAKLK 846
AAL F DLH +L R P+L+ L L+ T +L+RR+ G+ + + S P A T S V + + RE I+ ++ AD+ V +EVTE AL+R +LYA QGID +Y+++ Y + L++ R R IV R+ E+GWLF+ V Y I QAF +L+E++++YY+L+AVL +Q + A S G L+L RLAVW +PM R++ MA LV L+
Sbjct: 75 AALAFADLHSKL------SARAPLLNRWALLYLLNTLSLDRRRSASSPPGGLPFLPLQPASHPPRASTASGAVGAGGGGVVRVAKDPENIRE---IALREF-ADL---------VIADTEVTESALVRDVLYACQGIDGRYVRFDRSSDGYDLPESLKVPRHTRTIVRRLCELGWLFRKVRDYISEITVDRQFEIGTVGQAFCSALQEELSDYYKLLAVLESQSSNPIPSAGSDSGGGTG-----NYLSLMRLAVWFTEPMVRMRLMAVLVDCCRVLR 328
BLAST of mRNA_H-elongata_contig7057.14713.1 vs. uniprot
Match: A0A2J7QIP4_9NEOP (Gamma-tubulin complex component (Fragment) n=2 Tax=Cryptotermes secundus TaxID=105785 RepID=A0A2J7QIP4_9NEOP) HSP 1 Score: 111 bits (278), Expect = 2.050e-24 Identity = 58/157 (36.94%), Postives = 90/157 (57.32%), Query Frame = 1
Query: 361 VGSEVTERALLRGILYAFQGIDSQYIKYCVEESRYAIDPRLRLGRSQREIVSRMLEMGWLFKTVMMYCENIGSPDPLGSSRTQQAFVFSLKEDMTEYYRLIAVLGAQLNLDAAKAAEGSFESRGVTTVTEGLTLKRLAVWVVDPMERLKQMATLVSA 831
V SEV E LL+ ++Y+FQGI+ +++K Y +DP++R+ RS R V R+ E+GWL V +CEN + LG Q+ + +L+ ++TEYYRL+A+L +Q+ + + TEGLTL RLAVW +P +K +A + A
Sbjct: 209 VSSEVPESQLLQELIYSFQGINGKFLKLSPVSQGYILDPKVRVKRSVRRFVLRLAELGWLHNQVRQHCENAAASRTLGL--IGQSLIAALRAELTEYYRLVAILQSQIKQQIDTSVDSPLCEEQPLWHTEGLTLCRLAVWTFEPQRHMKCLAAVAEA 363
BLAST of mRNA_H-elongata_contig7057.14713.1 vs. uniprot
Match: V3ZZ97_LOTGI (Gamma-tubulin complex component n=1 Tax=Lottia gigantea TaxID=225164 RepID=V3ZZ97_LOTGI) HSP 1 Score: 112 bits (281), Expect = 2.770e-24 Identity = 86/282 (30.50%), Postives = 136/282 (48.23%), Query Frame = 1
Query: 19 GNGIDAALKFQDLHGRLRLLNCVKKRGPMLHTLYALMGTGTLERRQGVGMAQML------SRAFSEPVAALT-GSNHVARPRTAL----ALSTNEAHGGRESNGISREQWRADMTKRSGGPARVPVGSEVTERALLRGILYAFQGIDSQYIKYCVEESRYAIDPRLRLGRSQREIVSRMLEMGWLFKTVMMYCENIGSPDPLGSSRTQQAFVFSLKEDMTEYYRLIAVLGAQLNLDAAKAAEGSFESRGVTTVTEGLTLKRLAVWVVDPMERLKQMATLVSA 831
G DAA+ F +LH +L+ + R +L+ L +L T ++ + L + A S P T G + +AL + + H G+ ++ Q +S R P EV E LL+ ++YAFQGI+ ++IK+ + Y ID + + ++ R++VS++ E GWL+ Y + + G Q+F +L +++TEYYR I V+ AQL + + FE T GLTL+RLAVW DP+ RLK +A LV A
Sbjct: 55 GREKDAAI-FSELHRKLKAQGVLHNRWGVLYLLMSLSDTAPSSKQTSSFINSSLFSKGLPAYATSTPFHGGTRGGRDMTLTHSALYSTGSSGISSIHSGQHTDTTPVPQSFMPSNLKSALVPRTPESDEVNESELLKDLMYAFQGIEGRWIKFNTVKDGYRIDSQAGIPKAVRQLVSKLAECGWLYNKTKTYVTSWSTDKAFGL--VGQSFCAALHQELTEYYRFITVMEAQLQHEQ----DAGFEDSSNT----GLTLRRLAVWTFDPLVRLKVLAALVDA 325 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7057.14713.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig7057.14713.1 >prot_H-elongata_contig7057.14713.1 ID=prot_H-elongata_contig7057.14713.1|Name=mRNA_H-elongata_contig7057.14713.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=286bp QAPGSAGNGIDAALKFQDLHGRLRLLNCVKKRGPMLHTLYALMGTGTLERback to top mRNA from alignment at H-elongata_contig7057:5226..6595- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig7057.14713.1 ID=mRNA_H-elongata_contig7057.14713.1|Name=mRNA_H-elongata_contig7057.14713.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1370bp|location=Sequence derived from alignment at H-elongata_contig7057:5226..6595- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig7057:5226..6595- >mRNA_H-elongata_contig7057.14713.1 ID=mRNA_H-elongata_contig7057.14713.1|Name=mRNA_H-elongata_contig7057.14713.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1716bp|location=Sequence derived from alignment at H-elongata_contig7057:5226..6595- (Himanthalia elongata Himel1 dioecious)back to top |