mRNA_H-elongata_contig7056.14709.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig7056.14709.1
Unique NamemRNA_H-elongata_contig7056.14709.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig7056.14709.1 vs. uniprot
Match: D8LPY7_ECTSI (Helicase ATP-binding domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPY7_ECTSI)

HSP 1 Score: 65.9 bits (159), Expect = 1.740e-11
Identity = 29/36 (80.56%), Postives = 32/36 (88.89%), Query Frame = 1 
Query:    1 VIRLLPGWIAERVVKPPNFGGSFVALRNFFAQMHAR 108
            V+RLLPGWIAERVVKP NFG  FV+LR FFA+MHAR
Sbjct: 1041 VVRLLPGWIAERVVKPANFGQCFVSLRRFFAEMHAR 1076
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7056.14709.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LPY7_ECTSI1.740e-1180.56Helicase ATP-binding domain-containing protein n=1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig7056contigH-elongata_contig7056:8317..8436 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score67.0
Seed ortholog evalue2.3e-09
Seed eggNOG ortholog2880.D8LPY7
Preferred nameCHL1
KEGG koko:K11273
GOsGO:0000070,GO:0000228,GO:0000278,GO:0000280,GO:0000785,GO:0000790,GO:0000819,GO:0003674,GO:0003678,GO:0003824,GO:0004003,GO:0004386,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006281,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0007064,GO:0008026,GO:0008094,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022402,GO:0031974,GO:0031981,GO:0032392,GO:0032508,GO:0033554,GO:0034085,GO:0034641,GO:0034645,GO:0035861,GO:0036297,GO:0042623,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0045005,GO:0046483,GO:0048285,GO:0050896,GO:0051276,GO:0051716,GO:0070013,GO:0070035,GO:0071103,GO:0071704,GO:0071840,GO:0090304,GO:0090734,GO:0098813,GO:0140014,GO:0140097,GO:1901360,GO:1901576,GO:1903047
EggNOG free text desc.ATP-dependent DNA helicase activity
EggNOG OGsCOG1199@1,KOG1133@2759
EC3.6.4.13
COG Functional cat.KL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03036
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size120
Cds size120
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931103.1859806-CDS-H-elongata_contig7056:8316..84361622931103.1859806-CDS-H-elongata_contig7056:8316..8436Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7056 8317..8436 -
1691679699.2159836-CDS-H-elongata_contig7056:8316..84361691679699.2159836-CDS-H-elongata_contig7056:8316..8436Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7056 8317..8436 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig7056.14709.1prot_H-elongata_contig7056.14709.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig7056 8317..8436 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig7056.14709.1

>prot_H-elongata_contig7056.14709.1 ID=prot_H-elongata_contig7056.14709.1|Name=mRNA_H-elongata_contig7056.14709.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=40bp
VIRLLPGWIAERVVKPPNFGGSFVALRNFFAQMHARKVS*
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mRNA from alignment at H-elongata_contig7056:8317..8436-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig7056.14709.1 ID=mRNA_H-elongata_contig7056.14709.1|Name=mRNA_H-elongata_contig7056.14709.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=120bp|location=Sequence derived from alignment at H-elongata_contig7056:8317..8436- (Himanthalia elongata Himel1 dioecious)
GTGATTCGGCTTTTGCCAGGCTGGATCGCCGAGAGGGTGGTTAAGCCTCC
CAACTTTGGAGGCAGTTTTGTGGCGCTTCGTAACTTTTTCGCGCAAATGC
ACGCGCGAAAAGTCAGCTAA
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Coding sequence (CDS) from alignment at H-elongata_contig7056:8317..8436-

>mRNA_H-elongata_contig7056.14709.1 ID=mRNA_H-elongata_contig7056.14709.1|Name=mRNA_H-elongata_contig7056.14709.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=240bp|location=Sequence derived from alignment at H-elongata_contig7056:8317..8436- (Himanthalia elongata Himel1 dioecious)
GTGATTCGGCTTTTGCCAGGCTGGATCGCCGAGAGGGTGGTTAAGCCTCC
CAACTTTGGAGGCAGTTTTGTGGCGCTTCGTAACTTTTTCGCGCAAATGC
ACGCGCGAAAAGTCAGCTAAGTGATTCGGCTTTTGCCAGGCTGGATCGCC
GAGAGGGTGGTTAAGCCTCCCAACTTTGGAGGCAGTTTTGTGGCGCTTCG
TAACTTTTTCGCGCAAATGCACGCGCGAAAAGTCAGCTAA
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