mRNA_H-elongata_contig70398.14696.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig70398.14696.1
Unique NamemRNA_H-elongata_contig70398.14696.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig70398.14696.1 vs. uniprot
Match: A0A6H5JWI3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWI3_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 9.390e-13
Identity = 46/126 (36.51%), Postives = 62/126 (49.21%), Query Frame = 2 
Query:  131 VVRNTSQAEALAEALLCEGAGRFVAEWHGIVNLSRPLYVSNGTTLNVTGFPTGAGEEPDATAAV---IGDGTFRLIEAH---RGSVIFLSDLIFSGGNGALSIVDGSYAEVIGCAFISNNASSSNG 490
            VV  T +A  L+EALLC GAG F  EW G V L RP+++SNG+ + VTG   G        A V   + DG+   ++A    RG   + +   + GG   +   D        C+FI NNA  S G
Sbjct:   32 VVSTTEEASELSEALLCSGAGEFEVEWQGEVLLERPIFISNGSYVKVTGASAGEAVIDGGDAVVLFNVNDGSTLELDALSLVRGVATYTATYSYGGGGAVILRSDDCILTASSCSFIGNNAIDSGG 157
[Close]
BLAST of mRNA_H-elongata_contig70398.14696.1 vs. uniprot
Match: A0A6H5JLP6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLP6_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 1.310e-5
Identity = 41/128 (32.03%), Postives = 62/128 (48.44%), Query Frame = 2 
Query:  104 CNTSSSVYFVVRNTSQAEALAEALLCEGAGRFVAEWHGIVNLSRPLYVSNGTTLNVTGFPTGAGEEPDATAAVIGDGTFRLIEAHRGSVIFLSDLIFSGGNGALSIVDGSYAEVIGCAFISNNASSSN 487
            C    S  ++V NT+ A  LA A+ C G G F  EW G V + + L++S GTT+N+TG  T A     + A   G+G  R+      S + L  +  S G+G   +V G+    +G    S  ++  N
Sbjct:  112 CAPDLSREWLVENTADAIELANAINCTG-GTFDVEWRGSVLVPQTLWISQGTTVNITGVATTA-----SPAVADGNGESRIFGVINSS-LNLHGMTLSNGHG---VVGGAIFSALGTVTFSGGSALVN 229
[Close]
BLAST of mRNA_H-elongata_contig70398.14696.1 vs. uniprot
Match: D7FV90_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV90_ECTSI)

HSP 1 Score: 55.5 bits (132), Expect = 1.330e-5
Identity = 41/128 (32.03%), Postives = 64/128 (50.00%), Query Frame = 2 
Query:  104 CNTSSSVYFVVRNTSQAEALAEALLCEGAGRFVAEWHGIVNLSRPLYVSNGTTLNVTGFPTGAGEEPDATAAVIGDGTFRLIEAHRGSVIFLSDLIFSGGNGALSIVDGSYAEVIGCAFISNNASSSN 487
            C+   S  ++V +T+ A  LA A+ C G G F  EW G V + + L+VS GTT+N+TG  T A     + A   G+G  R+      S + L  +  S G+G   +V G+    +G    S +++  N
Sbjct:  218 CSPDLSREWLVEDTADAIELANAINCTG-GTFDVEWRGSVIVPQTLWVSQGTTVNITGVDTTA-----SPAVADGNGESRIFGVINSS-LNLHGMTLSNGHG---VVGGAIFSALGTVTFSGSSALVN 335
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig70398.14696.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JWI3_9PHAE9.390e-1336.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JLP6_9PHAE1.310e-532.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FV90_ECTSI1.330e-532.03Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig70398contigH-elongata_contig70398:2050..2625 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score66.2
Seed ortholog evalue1.5e-08
Seed eggNOG ortholog2880.D7FHH1
EggNOG OGs2BFIX@1,2S176@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Exons1
Model size576
Cds size453
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig70398.14696.1prot_H-elongata_contig70398.14696.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig70398 2096..2548 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931101.8649578-UTR-H-elongata_contig70398:2049..20951622931101.8649578-UTR-H-elongata_contig70398:2049..2095Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig70398 2050..2095 +
1691679698.6656623-UTR-H-elongata_contig70398:2049..20951691679698.6656623-UTR-H-elongata_contig70398:2049..2095Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig70398 2050..2095 +
1622931101.8977408-UTR-H-elongata_contig70398:2548..26251622931101.8977408-UTR-H-elongata_contig70398:2548..2625Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig70398 2549..2625 +
1691679698.6886249-UTR-H-elongata_contig70398:2548..26251691679698.6886249-UTR-H-elongata_contig70398:2548..2625Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig70398 2549..2625 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931101.8822787-CDS-H-elongata_contig70398:2095..25481622931101.8822787-CDS-H-elongata_contig70398:2095..2548Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70398 2096..2548 +
1691679698.6790204-CDS-H-elongata_contig70398:2095..25481691679698.6790204-CDS-H-elongata_contig70398:2095..2548Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70398 2096..2548 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig70398.14696.1

>prot_H-elongata_contig70398.14696.1 ID=prot_H-elongata_contig70398.14696.1|Name=mRNA_H-elongata_contig70398.14696.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=151bp
MLLLLLLLFCCGVIVAASQCNTSSSVYFVVRNTSQAEALAEALLCEGAGR
FVAEWHGIVNLSRPLYVSNGTTLNVTGFPTGAGEEPDATAAVIGDGTFRL
IEAHRGSVIFLSDLIFSGGNGALSIVDGSYAEVIGCAFISNNASSSNGGR
*
back to top

mRNA from alignment at H-elongata_contig70398:2050..2625+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig70398.14696.1 ID=mRNA_H-elongata_contig70398.14696.1|Name=mRNA_H-elongata_contig70398.14696.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=576bp|location=Sequence derived from alignment at H-elongata_contig70398:2050..2625+ (Himanthalia elongata Himel1 dioecious)
GAGCATCGTTCATCTCCAGCTTGTTGCCAACATAATTGAGCGCCAAATGC
TTCTTTTGCTTCTTCTGTTATTTTGTTGTGGGGTAATTGTGGCGGCTTCT
CAGTGCAACACAAGTAGTTCGGTATACTTTGTAGTGAGAAACACTTCGCA
GGCGGAGGCGCTAGCTGAGGCCCTGCTTTGCGAAGGAGCGGGAAGATTCG
TGGCTGAGTGGCATGGTATCGTCAATCTATCTCGGCCTCTCTATGTGTCT
AATGGAACGACCCTCAACGTGACGGGTTTTCCGACAGGGGCAGGCGAGGA
ACCAGACGCAACAGCGGCGGTGATTGGCGATGGCACATTTCGTCTTATTG
AGGCCCACCGGGGCTCAGTCATATTTCTATCGGACTTAATATTTTCAGGC
GGCAACGGAGCACTAAGCATCGTTGATGGTTCGTACGCCGAGGTGATTGG
CTGCGCCTTTATCAGCAACAACGCTTCGTCTTCTAATGGAGGTAGGTAAT
GCTATTGATATTCATTGTAAGGCCGCCGTAACAGTTAACATCATCAAACA
ATGTACTGTAATACTAATCTGTGAAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig70398:2050..2625+

>mRNA_H-elongata_contig70398.14696.1 ID=mRNA_H-elongata_contig70398.14696.1|Name=mRNA_H-elongata_contig70398.14696.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=906bp|location=Sequence derived from alignment at H-elongata_contig70398:2050..2625+ (Himanthalia elongata Himel1 dioecious)
ATGCTTCTTTTGCTTCTTCTGTTATTTTGTTGTGGGGTAATTGTGGCGGC
TTCTCAGTGCAACACAAGTAGTTCGGTATACTTTGTAGTGAGAAACACTT
CGCAGGCGGAGGCGCTAGCTGAGGCCCTGCTTTGCGAAGGAGCGGGAAGA
TTCGTGGCTGAGTGGCATGGTATCGTCAATCTATCTCGGCCTCTCTATGT
GTCTAATGGAACGACCCTCAACGTGACGGGTTTTCCGACAGGGGCAGGCG
AGGAACCAGACGCAACAGCGGCGGTGATTGGCGATGGCACATTTCGTCTT
ATTGAGGCCCACCGGGGCTCAGTCATATTTCTATCGGACTTAATATTTTC
AGGCGGCAACGGAGCACTAAGCATCGTTGATGGTTCGTACGCCGAGGTGA
TTGGCTGCGCCTTTATCAGCAACAACGCTTCGTCTTCTAATGGAGGTAGG
TAAATGCTTCTTTTGCTTCTTCTGTTATTTTGTTGTGGGGTAATTGTGGC
GGCTTCTCAGTGCAACACAAGTAGTTCGGTATACTTTGTAGTGAGAAACA
CTTCGCAGGCGGAGGCGCTAGCTGAGGCCCTGCTTTGCGAAGGAGCGGGA
AGATTCGTGGCTGAGTGGCATGGTATCGTCAATCTATCTCGGCCTCTCTA
TGTGTCTAATGGAACGACCCTCAACGTGACGGGTTTTCCGACAGGGGCAG
GCGAGGAACCAGACGCAACAGCGGCGGTGATTGGCGATGGCACATTTCGT
CTTATTGAGGCCCACCGGGGCTCAGTCATATTTCTATCGGACTTAATATT
TTCAGGCGGCAACGGAGCACTAAGCATCGTTGATGGTTCGTACGCCGAGG
TGATTGGCTGCGCCTTTATCAGCAACAACGCTTCGTCTTCTAATGGAGGT
AGGTAA
back to top