mRNA_H-elongata_contig70363.14693.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig70363.14693.1
Unique NamemRNA_H-elongata_contig70363.14693.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig70363.14693.1 vs. uniprot
Match: D8LES8_ECTSI (Similar to sirtuin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LES8_ECTSI)

HSP 1 Score: 114 bits (284), Expect = 9.830e-29
Identity = 54/65 (83.08%), Postives = 60/65 (92.31%), Query Frame = 1
Query:    1 QADLLLVLGTSLKVAPVSRIIQFMPPHVPQVLVNRELIRPPRAVSDGFDLHLLGNCDDVIAHICT 195
            +ADL LVLGTSLKV PVSRI+QF+PPHVPQVLVNRELIRPPR +SDGFDLHLLG+CDDVI H+ T
Sbjct:  225 KADLFLVLGTSLKVQPVSRILQFIPPHVPQVLVNRELIRPPRKISDGFDLHLLGDCDDVIQHLYT 289          
BLAST of mRNA_H-elongata_contig70363.14693.1 vs. uniprot
Match: A0A507DJ33_9FUNG (Deacetylase sirtuin-type domain-containing protein n=2 Tax=Synchytrium endobioticum TaxID=286115 RepID=A0A507DJ33_9FUNG)

HSP 1 Score: 85.9 bits (211), Expect = 5.820e-18
Identity = 40/71 (56.34%), Postives = 55/71 (77.46%), Query Frame = 1
Query:    1 QADLLLVLGTSLKVAPVSRIIQFMPPHVPQVLVNRELIRPPRAVSDGFDLHLLGNCDDVIAHICTRLGWEL 213
            QADLLLV+G+SLKVAPV  ++  +P HVPQ+L+N E +  P     GFD+ LLG+CD+++ ++CTRLGWEL
Sbjct:  394 QADLLLVMGSSLKVAPVGNVMNKLPHHVPQILINLESL--PHM--SGFDVQLLGDCDEIVKYLCTRLGWEL 460          
BLAST of mRNA_H-elongata_contig70363.14693.1 vs. uniprot
Match: A0A1Y2HUV5_9FUNG (DHS-like NAD/FAD-binding domain-containing protein (Fragment) n=1 Tax=Catenaria anguillulae PL171 TaxID=765915 RepID=A0A1Y2HUV5_9FUNG)

HSP 1 Score: 84.3 bits (207), Expect = 8.190e-18
Identity = 41/69 (59.42%), Postives = 54/69 (78.26%), Query Frame = 1
Query:    1 QADLLLVLGTSLKVAPVSRIIQFMPPHVPQVLVNRELIRPPRAVSDGFDLHLLGNCDDVIAHICTRLGW 207
            QAD +LV+G+SLKVAPVS I++ +P HVPQV++NREL+  P  +   FD+HLLGN D V+A +C RLGW
Sbjct:  255 QADFVLVIGSSLKVAPVSEILRAVPDHVPQVIINRELL--PH-LKHHFDVHLLGNADTVVADLCARLGW 320          
BLAST of mRNA_H-elongata_contig70363.14693.1 vs. uniprot
Match: F0XMI9_GROCL (Actin cytoskeleton-regulatory complex protein SLA1 n=1 Tax=Grosmannia clavigera (strain kw1407 / UAMH 11150) TaxID=655863 RepID=F0XMI9_GROCL)

HSP 1 Score: 84.0 bits (206), Expect = 2.920e-17
Identity = 38/71 (53.52%), Postives = 53/71 (74.65%), Query Frame = 1
Query:    1 QADLLLVLGTSLKVAPVSRIIQFMPPHVPQVLVNRELIRPPRAVSDGFDLHLLGNCDDVIAHICTRLGWEL 213
            +ADL++V+GTSLKVAPVS ++ FMPPHVPQ+ ++R  +         FD+ LLG+CD V+A +C RLGW+L
Sbjct:  451 RADLVVVIGTSLKVAPVSEVVPFMPPHVPQIYISRTPVH-----HINFDIDLLGDCDVVVAELCRRLGWDL 516          
BLAST of mRNA_H-elongata_contig70363.14693.1 vs. uniprot
Match: A0A5D6XQK5_9STRA (Deacetylase sirtuin-type domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XQK5_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 5.300e-17
Identity = 39/81 (48.15%), Postives = 55/81 (67.90%), Query Frame = 1
Query:    1 QADLLLVLGTSLKVAPVSRIIQFMPPHVPQVLVNRELIR----------PPRAVSDGFDLHLLGNCDDVIAHICTRLGWEL 213
            +ADLLLV+GTSLKV+PV+ I  F+P H+PQV++N+  ++          PP A S  FDL LLG+CD+++  IC   GW+L
Sbjct:  346 RADLLLVIGTSLKVSPVAEIPGFLPSHIPQVVINKTALKKKALRSNSKKPPAASSTAFDLTLLGDCDEIVEQICALAGWDL 426          
BLAST of mRNA_H-elongata_contig70363.14693.1 vs. uniprot
Match: A0A167VIL8_9PEZI (SIR2-like protein n=1 Tax=Sporothrix insectorum RCEF 264 TaxID=1081102 RepID=A0A167VIL8_9PEZI)

HSP 1 Score: 83.2 bits (204), Expect = 5.340e-17
Identity = 37/71 (52.11%), Postives = 52/71 (73.24%), Query Frame = 1
Query:    1 QADLLLVLGTSLKVAPVSRIIQFMPPHVPQVLVNRELIRPPRAVSDGFDLHLLGNCDDVIAHICTRLGWEL 213
            +ADL++V+GTSLKVAPVS ++ FMPPHVPQ+ ++R  +         FD+ LLG+CD V+A +C R GW+L
Sbjct:  478 RADLVIVIGTSLKVAPVSEVVPFMPPHVPQIYISRTAVH-----HINFDIDLLGDCDVVVAELCRRAGWDL 543          
BLAST of mRNA_H-elongata_contig70363.14693.1 vs. uniprot
Match: A0A2T3AGT3_9PEZI (DHS-like NAD/FAD-binding domain-containing protein n=1 Tax=Coniella lustricola TaxID=2025994 RepID=A0A2T3AGT3_9PEZI)

HSP 1 Score: 82.8 bits (203), Expect = 7.220e-17
Identity = 36/71 (50.70%), Postives = 53/71 (74.65%), Query Frame = 1
Query:    1 QADLLLVLGTSLKVAPVSRIIQFMPPHVPQVLVNRELIRPPRAVSDGFDLHLLGNCDDVIAHICTRLGWEL 213
            + DL++V+GTSLKVAPVS ++ F+PPHVPQ+ ++RE ++        FD+ LLG+CD V+A +C R GW+L
Sbjct:  408 KTDLVVVIGTSLKVAPVSELVPFLPPHVPQIYISREPVK-----HHNFDIDLLGDCDVVVAELCERAGWDL 473          
BLAST of mRNA_H-elongata_contig70363.14693.1 vs. uniprot
Match: A0A1E4TGZ2_9ASCO (Deacetylase sirtuin-type domain-containing protein n=1 Tax=Tortispora caseinolytica NRRL Y-17796 TaxID=767744 RepID=A0A1E4TGZ2_9ASCO)

HSP 1 Score: 82.0 bits (201), Expect = 1.290e-16
Identity = 39/71 (54.93%), Postives = 51/71 (71.83%), Query Frame = 1
Query:    1 QADLLLVLGTSLKVAPVSRIIQFMPPHVPQVLVNRELIRPPRAVSDGFDLHLLGNCDDVIAHICTRLGWEL 213
              DLL+ +GTSLKVAPVS I++ +P  VPQ+ +NR+  R  +     FD+ LLGNCDDV+AH+C  LGWEL
Sbjct:  337 MCDLLICIGTSLKVAPVSEIVRMLPSSVPQIYINRQPCRHYQ-----FDITLLGNCDDVVAHLCHLLGWEL 402          
BLAST of mRNA_H-elongata_contig70363.14693.1 vs. uniprot
Match: A0A0A1TAB2_9HYPO (Putative Sir2 family protein n=1 Tax=Torrubiella hemipterigena TaxID=1531966 RepID=A0A0A1TAB2_9HYPO)

HSP 1 Score: 81.6 bits (200), Expect = 1.790e-16
Identity = 36/71 (50.70%), Postives = 53/71 (74.65%), Query Frame = 1
Query:    1 QADLLLVLGTSLKVAPVSRIIQFMPPHVPQVLVNRELIRPPRAVSDGFDLHLLGNCDDVIAHICTRLGWEL 213
            + DL++++GTSLKV PVS I+ F+PP +PQ+ ++RE I   R     FD++LLG+CD V+A +C+RLGW L
Sbjct:  387 KVDLVIIIGTSLKVTPVSEIVNFLPPEIPQLYISREAITHTR-----FDINLLGDCDVVVAELCSRLGWPL 452          
BLAST of mRNA_H-elongata_contig70363.14693.1 vs. uniprot
Match: A0A3P8FVY9_9TREM (Deacetylase sirtuin-type domain-containing protein n=2 Tax=Echinostoma caproni TaxID=27848 RepID=A0A3P8FVY9_9TREM)

HSP 1 Score: 80.9 bits (198), Expect = 2.980e-16
Identity = 38/71 (53.52%), Postives = 53/71 (74.65%), Query Frame = 1
Query:    1 QADLLLVLGTSLKVAPVSRIIQFMPPHVPQVLVNRELIRPPRAVSDGFDLHLLGNCDDVIAHICTRLGWEL 213
            +ADL+LV+G+SLKV PVS I   +P HVPQ+L+NRE +      +  FD+ LLG+CD +++ +CTRLGWEL
Sbjct:  144 EADLVLVMGSSLKVRPVSHIPNSIPGHVPQILINREPLS-----NHDFDVELLGDCDVIVSELCTRLGWEL 209          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig70363.14693.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LES8_ECTSI9.830e-2983.08Similar to sirtuin n=1 Tax=Ectocarpus siliculosus ... [more]
A0A507DJ33_9FUNG5.820e-1856.34Deacetylase sirtuin-type domain-containing protein... [more]
A0A1Y2HUV5_9FUNG8.190e-1859.42DHS-like NAD/FAD-binding domain-containing protein... [more]
F0XMI9_GROCL2.920e-1753.52Actin cytoskeleton-regulatory complex protein SLA1... [more]
A0A5D6XQK5_9STRA5.300e-1748.15Deacetylase sirtuin-type domain-containing protein... [more]
A0A167VIL8_9PEZI5.340e-1752.11SIR2-like protein n=1 Tax=Sporothrix insectorum RC... [more]
A0A2T3AGT3_9PEZI7.220e-1750.70DHS-like NAD/FAD-binding domain-containing protein... [more]
A0A1E4TGZ2_9ASCO1.290e-1654.93Deacetylase sirtuin-type domain-containing protein... [more]
A0A0A1TAB2_9HYPO1.790e-1650.70Putative Sir2 family protein n=1 Tax=Torrubiella h... [more]
A0A3P8FVY9_9TREM2.980e-1653.52Deacetylase sirtuin-type domain-containing protein... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig70363contigH-elongata_contig70363:1053..1896 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score114.8
Seed ortholog evalue1.7e-23
Seed eggNOG ortholog2880.D8LES8
KEGG rclassRC00033,RC00096,RC00485
KEGG koko:K11121,ko:K11411
KEGG ReactionR00102,R10633
KEGG Pathwayko00760,ko01100,ko04068,ko04152,ko04211,ko04212,ko04213,ko04218,ko04922,ko05031,ko05206,map00760,map01100,map04068,map04152,map04211,map04212,map04213,map04218,map04922,map05031,map05206
EggNOG free text desc.NAD binding
EggNOG OGsCOG0846@1,KOG2684@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03029,ko03032,ko03036
Hectar predicted targeting categoryother localisation
Exons2
Model size213
Cds size213
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931101.6967797-CDS-H-elongata_contig70363:1052..11421622931101.6967797-CDS-H-elongata_contig70363:1052..1142Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70363 1053..1142 +
1691679698.6109836-CDS-H-elongata_contig70363:1052..11421691679698.6109836-CDS-H-elongata_contig70363:1052..1142Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70363 1053..1142 +
1622931101.7175977-CDS-H-elongata_contig70363:1773..18961622931101.7175977-CDS-H-elongata_contig70363:1773..1896Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70363 1774..1896 +
1691679698.6233454-CDS-H-elongata_contig70363:1773..18961691679698.6233454-CDS-H-elongata_contig70363:1773..1896Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70363 1774..1896 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig70363.14693.1prot_H-elongata_contig70363.14693.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig70363 1053..1896 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig70363.14693.1

>prot_H-elongata_contig70363.14693.1 ID=prot_H-elongata_contig70363.14693.1|Name=mRNA_H-elongata_contig70363.14693.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=71bp
QADLLLVLGTSLKVAPVSRIIQFMPPHVPQVLVNRELIRPPRAVSDGFDL
HLLGNCDDVIAHICTRLGWEL
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mRNA from alignment at H-elongata_contig70363:1053..1896+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig70363.14693.1 ID=mRNA_H-elongata_contig70363.14693.1|Name=mRNA_H-elongata_contig70363.14693.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=844bp|location=Sequence derived from alignment at H-elongata_contig70363:1053..1896+ (Himanthalia elongata Himel1 dioecious)
CAGGCCGACCTCCTGCTGGTCTTGGGAACGTCGCTTAAGGTCGCGCCCGT GTCGCGAATTATCCAATTCATGCCGCCCCACGTTCCCCAGGTGATATGCA TGCGCACGGCGGGACACGCTTTGAGGATATACACGAAATGTTTTAACAGA AAGTTGGATTACTGTTCTCTAGGCCGCGCCCTCAGATGAAAGCAGCCTTT GCGATTGGAACAACCCCGAGCGGAGCGCGCCTGGAATCCTTCACATCGCC GATTTTTTTTATACACCCTTTCGTTGGTTGATTGGAGGTGCCTCTCCCTC TCATTCTCTCTCCTTCTCTCTCAACAACCCCTAAACAAAAGGTAGGCGGC GAAGAGTGTTGTGCTATGGCGCGCGATCCTGTGTACAGTCACGGGGCGAT GTTCATGTTTTTAGAGGAGCTTGGGCCATGACACGGTTTTACCCTCCCCG GCCGTGCCAAGCGCGGTTTGCGTTTCCCTCCCGACCCTCCGGCACGCGTC TCTGCTTATTTCCTCCCCGGGCGAGAGAAACCTGCTGAGGGAGCTTGTTG CACGCTCATTTGTCGCCCAGCGGCTACGTTTCGTATTCGACTAGCGGCTA CAATTGGTGCTCGATGTCGCCATCCTCCGAGTAGGAATATAATACGACCA CGGCGCTCAATTGAGGACTAACGGGGGTAAGGCCGACAATTCCCCCGCTT CCCTCCGTCATTCTTCTTAAGGTCCTGGTGAACCGAGAGCTGATACGTCC CCCGCGAGCCGTTTCGGACGGATTCGACCTCCACCTCCTCGGAAACTGTG ATGACGTCATCGCCCACATATGCACGCGCCTCGGTTGGGAACTC
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Coding sequence (CDS) from alignment at H-elongata_contig70363:1053..1896+

>mRNA_H-elongata_contig70363.14693.1 ID=mRNA_H-elongata_contig70363.14693.1|Name=mRNA_H-elongata_contig70363.14693.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=426bp|location=Sequence derived from alignment at H-elongata_contig70363:1053..1896+ (Himanthalia elongata Himel1 dioecious)
CAGGCCGACCTCCTGCTGGTCTTGGGAACGTCGCTTAAGGTCGCGCCCGT
GTCGCGAATTATCCAATTCATGCCGCCCCACGTTCCCCAGCAGGCCGACC
TCCTGCTGGTCTTGGGAACGTCGCTTAAGGTCGCGCCCGTGTCGCGAATT
ATCCAATTCATGCCGCCCCACGTTCCCCAGGTCCTGGTGAACCGAGAGCT
GATACGTCCCCCGCGAGCCGTTTCGGACGGATTCGACCTCCACCTCCTCG
GAAACTGTGATGACGTCATCGCCCACATATGCACGCGCCTCGGTTGGGAA
CTCGTCCTGGTGAACCGAGAGCTGATACGTCCCCCGCGAGCCGTTTCGGA
CGGATTCGACCTCCACCTCCTCGGAAACTGTGATGACGTCATCGCCCACA
TATGCACGCGCCTCGGTTGGGAACTC
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