prot_H-elongata_contig703.14688.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig703.14688.1
Unique Nameprot_H-elongata_contig703.14688.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length121
Homology
[Close]
BLAST of mRNA_H-elongata_contig703.14688.1 vs. uniprot
Match: D8LUC5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LUC5_ECTSI)

HSP 1 Score: 126 bits (317), Expect = 3.020e-35
Identity = 64/117 (54.70%), Postives = 76/117 (64.96%), Query Frame = 0 
Query:    5 QRRALLEIFGVEEDEGALALFLGLILVGLTVLACCYCKVYDPIKLSCIRCWKRC-NKGEEEEQAPPPEQPSTSEREHWYLNKTLKIDRKDRDELGPVADVKGLQGGWYGARNGGFDV 120
            +RR L ++FGV ED+GA  L  GLI+ GLT  ACCYCKVYDP++   I+ + RC  K                 R HWYLN+TL+IDR DRDELGP     GL+GGWYGARNGGFDV
Sbjct:    9 ERRILFDVFGVSEDDGAYVLIAGLIMGGLTFTACCYCKVYDPLRNWSIKTYNRCCKKXXXXXXXXXXXXXXXXXRRHWYLNQTLQIDRADRDELGPQGARTGLKGGWYGARNGGFDV 125
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig703.14688.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LUC5_ECTSI3.020e-3554.70Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 20..43
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..19
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 44..120
NoneNo IPR availableTMHMMTMhelixcoord: 22..44

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig703contigH-elongata_contig703:17138..17869 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig703.14688.1mRNA_H-elongata_contig703.14688.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig703 17138..17869 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig703.14688.1 ID=prot_H-elongata_contig703.14688.1|Name=mRNA_H-elongata_contig703.14688.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=121bp
MEAGQRRALLEIFGVEEDEGALALFLGLILVGLTVLACCYCKVYDPIKLS
CIRCWKRCNKGEEEEQAPPPEQPSTSEREHWYLNKTLKIDRKDRDELGPV
ADVKGLQGGWYGARNGGFDV*
back to top