prot_H-elongata_contig70294.14687.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig70294.14687.1
Unique Name	prot_H-elongata_contig70294.14687.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	368

Homology

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BLAST of mRNA_H-elongata_contig70294.14687.1 vs. uniprot
Match: D8LM12_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LM12_ECTSI)

HSP 1 Score: 302 bits (774), Expect = 1.960e-94
Identity = 201/384 (52.34%), Postives = 234/384 (60.94%), Query Frame = 0

Query:    1 QVFWLILESTAGNEDSRGYVRLPSVALYALALHAVGHLLLFRCHC--RGVDHHAMEFLLDLATDVVGFAWINLAEEMLAQVFLVTARTAFLYSVLALAASLGAMEIGSCVRRLLKWPPEFDGTANEFDAGSFALPTSWLVTQAVHIALYGFFYRTSVVGGQDGRG---DRDEKVDVRLAASLFLLVYAMLCSAIAARLIGGTVAAASVFTDPDVGIDGIGGESSLAQGEGAESVDRSDLVIRTVEAGGPFRAALAYDM-----------ITSSSSRSQPRDQELPKRERGLDAPLEGQGATDHSGTQRATMGDVQAMPSPEWEDGETSGGNGGAAASSEARPETTATLFAAAVGAMEASRTRREYLRRGLKAYVRITVGMMVGW 368
            Q FWLILE+TAGNEDSRGYVRL SVA YALALHA GHLLL R     R + HHA+EFLLDL TDVVGFAWIN+AEEMLAQVF V A+T  +Y+ LA AASLGAME+GS  R LL WP  F+ TAN+FDAGSFALPTSWLVTQ VHI LYGFFYRT+  GGQ GRG   + D+ VDVRLAASLFLL YA+LCSA+A R+IGGTVAA                  + +   G  +  RSDLVIR + + G   AA A D            + +SS+ S    +    RE G D                A +G     PS   + G+  G  G A  +              A G  +A   RR+ LRRGLKAY+R+TVGMMVGW
Sbjct:   37 QAFWLILEATAGNEDSRGYVRLSSVACYALALHAGGHLLLHRYSSGRRKLSHHALEFLLDLVTDVVGFAWINVAEEMLAQVFEVRAKTTLVYAALAFAASLGAMELGSLARSLLDWPVGFEETANQFDAGSFALPTSWLVTQGVHIGLYGFFYRTA--GGQGGRGGDGEEDDVVDVRLAASLFLLAYALLCSALATRVIGGTVAAXXXXXXXXXXXXXXXXXLTRSN-SGGSTGSRSDLVIRAISSYG-VTAAQASDAAXXXXXXXXGDVEASSTPSCGGGRNTSYREGGGDV---------------ADVG-----PSNSTKVGDGGGERGAAPLAXXXXXXXXXXXXXXAAGGEDA---RRDSLRRGLKAYMRLTVGMMVGW 393

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig70294.14687.1 vs. uniprot

BLAST of mRNA_H-elongata_contig70294.14687.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
D8LM12_ECTSI	1.960e-94	52.34	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 73..86
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..24
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 109..128
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 195..368
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 129..151
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 87..108
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 152..170
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 171..194
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 25..43
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 44..54
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 55..72
None	No IPR available	TMHMM	TMhelix		coord: 129..151
None	No IPR available	TMHMM	TMhelix		coord: 87..109
None	No IPR available	TMHMM	TMhelix		coord: 19..41
None	No IPR available	TMHMM	TMhelix		coord: 172..194

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig70294	contig	H-elongata_contig70294:841..3221 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig70294.14687.1	mRNA_H-elongata_contig70294.14687.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig70294 841..3221 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig70294.14687.1 ID=prot_H-elongata_contig70294.14687.1|Name=mRNA_H-elongata_contig70294.14687.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=368bp
QVFWLILESTAGNEDSRGYVRLPSVALYALALHAVGHLLLFRCHCRGVDH
HAMEFLLDLATDVVGFAWINLAEEMLAQVFLVTARTAFLYSVLALAASLG
AMEIGSCVRRLLKWPPEFDGTANEFDAGSFALPTSWLVTQAVHIALYGFF
YRTSVVGGQDGRGDRDEKVDVRLAASLFLLVYAMLCSAIAARLIGGTVAA
ASVFTDPDVGIDGIGGESSLAQGEGAESVDRSDLVIRTVEAGGPFRAALA
YDMITSSSSRSQPRDQELPKRERGLDAPLEGQGATDHSGTQRATMGDVQA
MPSPEWEDGETSGGNGGAAASSEARPETTATLFAAAVGAMEASRTRREYL
RRGLKAYVRITVGMMVGW