mRNA_H-elongata_contig70220.14682.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig70220.14682.1
Unique NamemRNA_H-elongata_contig70220.14682.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig70220.14682.1 vs. uniprot
Match: D8LB01_ECTSI (NAD(P)-bd_dom domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB01_ECTSI)

HSP 1 Score: 386 bits (992), Expect = 1.300e-132
Identity = 187/206 (90.78%), Postives = 198/206 (96.12%), Query Frame = 1
Query:   22 QFVKGNICSSDLMLYILREEKIDTILHFAAQTHVDNSFGNSFQFTQNNIYGTHVLLESAKKVGIKRFIHVSTDEVYGEGEHDQEPMFEDHVLEPTNPYAATKAGAEFIAKAYFRSFNLPVVITRGNNVYGPHQYPEKLIPKFINQLMRGKKLTIHGTGENTRNFLYVKDVATAFEKILHEAVEGHIYNIGGSNEVSVLQVAKDLMR 639
            +FVKGNICSSD++ Y+LREEKIDTILHFAAQTHVDNSFGNSFQFTQNNIYGTHVLLESAKKVGIKRF+HVSTDEVYGEGEHDQEPMFED+VLEPTNPYAATKAGAEFIAKAYFRSFNLPV+ITRGNNVYGPHQYPEKLIPKFINQLMRGKKLTIHGTG N RNFL+V DVATAFEKILH  VEG IYNIGG+NE SVL+VA+DLMR
Sbjct:   77 KFVKGNICSSDMVTYVLREEKIDTILHFAAQTHVDNSFGNSFQFTQNNIYGTHVLLESAKKVGIKRFVHVSTDEVYGEGEHDQEPMFEDNVLEPTNPYAATKAGAEFIAKAYFRSFNLPVIITRGNNVYGPHQYPEKLIPKFINQLMRGKKLTIHGTGSNKRNFLHVADVATAFEKILHAGVEGSIYNIGGTNEHSVLKVARDLMR 282          
BLAST of mRNA_H-elongata_contig70220.14682.1 vs. uniprot
Match: A0A6H5KQM4_9PHAE (NAD(P)-bd_dom domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQM4_9PHAE)

HSP 1 Score: 384 bits (987), Expect = 4.830e-132
Identity = 186/206 (90.29%), Postives = 197/206 (95.63%), Query Frame = 1
Query:   22 QFVKGNICSSDLMLYILREEKIDTILHFAAQTHVDNSFGNSFQFTQNNIYGTHVLLESAKKVGIKRFIHVSTDEVYGEGEHDQEPMFEDHVLEPTNPYAATKAGAEFIAKAYFRSFNLPVVITRGNNVYGPHQYPEKLIPKFINQLMRGKKLTIHGTGENTRNFLYVKDVATAFEKILHEAVEGHIYNIGGSNEVSVLQVAKDLMR 639
            +FVKGNICSSD++ Y+LREE IDTILHFAAQTHVDNSFGNSFQFTQNNIYGTHVLLESAKKVGIKRF+HVSTDEVYGEGEHDQEPMFED+VLEPTNPYAATKAGAEFIAKAYFRSFNLPV+ITRGNNVYGPHQYPEKLIPKFINQLMRGKKLTIHGTG N RNFL+V DVATAFEKILH  VEG IYNIGG+NE SVL+VA+DLMR
Sbjct:   77 KFVKGNICSSDMVTYVLREENIDTILHFAAQTHVDNSFGNSFQFTQNNIYGTHVLLESAKKVGIKRFVHVSTDEVYGEGEHDQEPMFEDNVLEPTNPYAATKAGAEFIAKAYFRSFNLPVIITRGNNVYGPHQYPEKLIPKFINQLMRGKKLTIHGTGSNKRNFLHVADVATAFEKILHAGVEGSIYNIGGTNEHSVLKVARDLMR 282          
BLAST of mRNA_H-elongata_contig70220.14682.1 vs. uniprot
Match: A0A836C9V8_9STRA (Dtdp-glucose 4,6-dehydratase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9V8_9STRA)

HSP 1 Score: 350 bits (899), Expect = 4.060e-118
Identity = 166/206 (80.58%), Postives = 189/206 (91.75%), Query Frame = 1
Query:   22 QFVKGNICSSDLMLYILREEKIDTILHFAAQTHVDNSFGNSFQFTQNNIYGTHVLLESAKKVG-IKRFIHVSTDEVYGEGEHDQEPMFEDHVLEPTNPYAATKAGAEFIAKAYFRSFNLPVVITRGNNVYGPHQYPEKLIPKFINQLMRGKKLTIHGTGENTRNFLYVKDVATAFEKILHEAVEGHIYNIGGSNEVSVLQVAKDLM 636
            +FVKGNICSSD++ Y+LREEK+DTI+HFAAQTHVDNSFGNSF FT NNI GTHVLLESAK +G ++RFIHVSTDEVYGEGEH++EPMFEDHVLEPTNPYAATKAGAEFIAKAY+RSF LP++ITRGNNVYGPHQYPEK+IPKFINQL+RG+ LT+HG G NTRNFLYV+DVA AF+ ILH+   G IYNIGGSNE SVL+VAKDL+
Sbjct:   83 KFVKGNICSSDMVTYVLREEKVDTIIHFAAQTHVDNSFGNSFTFTHNNIMGTHVLLESAKTLGTVRRFIHVSTDEVYGEGEHNEEPMFEDHVLEPTNPYAATKAGAEFIAKAYYRSFKLPIIITRGNNVYGPHQYPEKMIPKFINQLLRGRPLTVHGDGRNTRNFLYVQDVARAFDVILHKGEVGRIYNIGGSNEHSVLKVAKDLL 288          
BLAST of mRNA_H-elongata_contig70220.14682.1 vs. uniprot
Match: W7TPP3_9STRA (Rhamnose biosynthetic enzyme expressed n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TPP3_9STRA)

HSP 1 Score: 335 bits (860), Expect = 2.930e-112
Identity = 163/206 (79.13%), Postives = 182/206 (88.35%), Query Frame = 1
Query:   22 QFVKGNICSSDLMLYILREEKIDTILHFAAQTHVDNSFGNSFQFTQNNIYGTHVLLESAKKVGIKRFIHVSTDEVYGEGEHDQEPMFEDHVLEPTNPYAATKAGAEFIAKAYFRSFNLPVVITRGNNVYGPHQYPEKLIPKFINQLMRGKKLTIHGTGENTRNFLYVKDVATAFEKILHEAVEGHIYNIGGSNEVSVLQVAKDLMR 639
            +FVKGNICSSDL+ Y+L EE+IDTI+HFAAQTHVDNSFGNSF FTQNNI GTHVLLESAK   IKRFIHVSTDEVYGEG  DQEPMFED VLEPTNPYAATKAGAEFIAK+Y RSFNLP++ITRGNNVYGPHQYPEKLIPKF+N LMR + +T+HG G NTRNFLYV+DVA AFE ILH  V G IYNIGG++E + ++VAKDL+R
Sbjct:  117 KFVKGNICSSDLVNYVLEEEEIDTIMHFAAQTHVDNSFGNSFSFTQNNILGTHVLLESAKVHNIKRFIHVSTDEVYGEGAADQEPMFEDQVLEPTNPYAATKAGAEFIAKSYSRSFNLPLIITRGNNVYGPHQYPEKLIPKFVNLLMRDRPVTLHGNGLNTRNFLYVEDVARAFEVILHRGVTGKIYNIGGTHEKANIEVAKDLIR 322          
BLAST of mRNA_H-elongata_contig70220.14682.1 vs. uniprot
Match: A0A7S2CKW6_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CKW6_9STRA)

HSP 1 Score: 331 bits (848), Expect = 6.880e-111
Identity = 158/205 (77.07%), Postives = 183/205 (89.27%), Query Frame = 1
Query:   22 QFVKGNICSSDLMLYILREEKIDTILHFAAQTHVDNSFGNSFQFTQNNIYGTHVLLESAKKVGIKRFIHVSTDEVYGEGEHDQEPMFEDHVLEPTNPYAATKAGAEFIAKAYFRSFNLPVVITRGNNVYGPHQYPEKLIPKFINQLMRGKKLTIHGTGENTRNFLYVKDVATAFEKILHEAVEGHIYNIGGSNEVSVLQVAKDLM 636
            +FVKGNICS+D++ Y+L EEKIDTI+HFAAQTHVDNSFGNSFQFTQNNI+GTHVLLESAK  GIKRFIHVSTDEVYGEG   ++PM E+HVLEPTNPYAATKAGAEF+ K+Y RSF+LPV+ITRGNNVYGPHQYPEK+IPKFINQL RG+ +T+HGTG+NTRNFLYV+DVA AFE IL +   G IYNIGG+NE+S + VAK L+
Sbjct:   68 KFVKGNICSADMVNYVLTEEKIDTIIHFAAQTHVDNSFGNSFQFTQNNIFGTHVLLESAKIHGIKRFIHVSTDEVYGEGGETEDPMKEEHVLEPTNPYAATKAGAEFLVKSYHRSFDLPVIITRGNNVYGPHQYPEKIIPKFINQLQRGRAVTLHGTGQNTRNFLYVEDVARAFEVILFKGQVGQIYNIGGTNEISNVDVAKMLI 272          
BLAST of mRNA_H-elongata_contig70220.14682.1 vs. uniprot
Match: A0A4D9D847_9STRA (NAD(P)-bd_dom domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D847_9STRA)

HSP 1 Score: 328 bits (841), Expect = 4.170e-109
Identity = 157/206 (76.21%), Postives = 183/206 (88.83%), Query Frame = 1
Query:   22 QFVKGNICSSDLMLYILREEKIDTILHFAAQTHVDNSFGNSFQFTQNNIYGTHVLLESAKKVGIKRFIHVSTDEVYGEGEHDQEPMFEDHVLEPTNPYAATKAGAEFIAKAYFRSFNLPVVITRGNNVYGPHQYPEKLIPKFINQLMRGKKLTIHGTGENTRNFLYVKDVATAFEKILHEAVEGHIYNIGGSNEVSVLQVAKDLMR 639
            +FVKGNICSSDL+ ++L EE+IDTI+H AAQTHVDNSFGNSF FTQNNI GTHVLLESAK  GI+RF+HVSTDEVYGEG   QEPMFED+VLEPTNPYAATKAGAEF+AK+Y RSFNLPV+ITRGNNVYGPHQYPEKLIPKFIN L+RG++LT+HG G NTRNFLYV DVA A++ +LH    G IYNIGG++E++ L+VAKD++R
Sbjct:   74 KFVKGNICSSDLVNFVLEEEEIDTIVHLAAQTHVDNSFGNSFSFTQNNILGTHVLLESAKVHGIRRFVHVSTDEVYGEGAAGQEPMFEDNVLEPTNPYAATKAGAEFLAKSYHRSFNLPVIITRGNNVYGPHQYPEKLIPKFINLLLRGRQLTLHGNGLNTRNFLYVTDVARAYDVVLHFGETGKIYNIGGTHEMANLEVAKDVIR 279          
BLAST of mRNA_H-elongata_contig70220.14682.1 vs. uniprot
Match: A0A7S2RRE1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RRE1_9STRA)

HSP 1 Score: 323 bits (828), Expect = 1.880e-107
Identity = 156/204 (76.47%), Postives = 175/204 (85.78%), Query Frame = 1
Query:   25 FVKGNICSSDLMLYILREEKIDTILHFAAQTHVDNSFGNSFQFTQNNIYGTHVLLESAKKVGIKRFIHVSTDEVYGEGEHDQEPMFEDHVLEPTNPYAATKAGAEFIAKAYFRSFNLPVVITRGNNVYGPHQYPEKLIPKFINQLMRGKKLTIHGTGENTRNFLYVKDVATAFEKILHEAVEGHIYNIGGSNEVSVLQVAKDLM 636
            FVKGNICS DL+ Y+L    IDTI+HFAAQ+HVDNSFGNSFQFTQNNIYGTHVLLESAK  GI+RFIHVSTDEVYGEG   Q+PM E+ VLEPTNPYAATKA AEFI K+Y RSFNLPV+ITRGNNVYGPHQYPEKLIPKF NQL+RG+ +T+HG G+NTRNFL+V DVA AFE IL +   G IYNIGGSNE+S L+VAK L+
Sbjct:  100 FVKGNICSPDLVNYVLEAHSIDTIMHFAAQSHVDNSFGNSFQFTQNNIYGTHVLLESAKIYGIERFIHVSTDEVYGEGSDGQDPMTEEQVLEPTNPYAATKAAAEFIVKSYHRSFNLPVIITRGNNVYGPHQYPEKLIPKFTNQLLRGRAVTLHGDGQNTRNFLFVTDVARAFEAILFKGAIGQIYNIGGSNEISNLEVAKSLI 303          
BLAST of mRNA_H-elongata_contig70220.14682.1 vs. uniprot
Match: F0Y3X2_AURAN (NAD(P)-bd_dom domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y3X2_AURAN)

HSP 1 Score: 320 bits (820), Expect = 4.010e-107
Identity = 153/207 (73.91%), Postives = 181/207 (87.44%), Query Frame = 1
Query:   22 QFVKGNICSSDLMLYILREEKIDTILHFAAQTHVDNSFGNSFQFTQNNIYGTHVLLESAKKVGIKRFIHVSTDEVYGEGEH-DQEPMFEDHVLEPTNPYAATKAGAEFIAKAYFRSFNLPVVITRGNNVYGPHQYPEKLIPKFINQLMRGKKLTIHGTGENTRNFLYVKDVATAFEKILHEAVEGHIYNIGGSNEVSVLQVAKDLMR 639
            +FVKG+ICS+DL+ ++L  E++DTI+HFAAQTHVDNSFGNSFQFT+NNI GTHVLLE+AK   IKRF+HVSTDEVYGEGE+ + EPM EDHVLEPTNPYAATKA AEF+ K+Y RSF LP++ITRGNNVYGPHQ+PEKLIPKF+NQL RG+ +T+HGTG NTRNFLYV+DVA AF+ ILH+A  G IYNIGG NE S L VAK+L+R
Sbjct:   50 KFVKGDICSADLVNFVLETEEVDTIMHFAAQTHVDNSFGNSFQFTRNNIMGTHVLLEAAKVHSIKRFVHVSTDEVYGEGENMETEPMIEDHVLEPTNPYAATKAAAEFLVKSYHRSFQLPIIITRGNNVYGPHQFPEKLIPKFVNQLARGRPVTLHGTGANTRNFLYVEDVARAFDCILHKAAVGKIYNIGGCNERSNLSVAKELIR 256          
BLAST of mRNA_H-elongata_contig70220.14682.1 vs. uniprot
Match: A0A6V2K0F2_9STRA (Hypothetical protein n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2K0F2_9STRA)

HSP 1 Score: 318 bits (815), Expect = 4.580e-106
Identity = 157/208 (75.48%), Postives = 176/208 (84.62%), Query Frame = 1
Query:   22 QFVKGNICSSDLMLYILREEKIDTILHFAAQTHVDNSFGNSFQFTQNNIYGTHVLLESAKKVG-IKRFIHVSTDEVYGEGEH-DQEPMFEDHVLEPTNPYAATKAGAEFIAKAYFRSFNLPVVITRGNNVYGPHQYPEKLIPKFINQLMRGKKLTIHGTGENTRNFLYVKDVATAFEKILHEAVEGHIYNIGGSNEVSVLQVAKDLMR 639
            +FVKG+ICS DL+ Y+L+EE IDTI+HFAAQTHVDNSFGNSF FT  NIYGTHVLLESA +   IKRFIHVSTDEVYGEGE  + +PM E+HVLEPTNPYAATKAGAEF+ K+Y RSF LPV++TRGNNVYGPHQYPEKLIPKF NQL+R   LT+HG G NTRNFLYV DVA AFE ILH+   GHIYNIGG NE+  LQVAKDL+R
Sbjct:   68 KFVKGDICSPDLVSYVLKEENIDTIMHFAAQTHVDNSFGNSFNFTHANIYGTHVLLESANRCPTIKRFIHVSTDEVYGEGEDFETDPMQEEHVLEPTNPYAATKAGAEFLVKSYHRSFKLPVILTRGNNVYGPHQYPEKLIPKFTNQLLRDMPLTLHGDGSNTRNFLYVTDVANAFEVILHKGQVGHIYNIGGKNELPNLQVAKDLIR 275          
BLAST of mRNA_H-elongata_contig70220.14682.1 vs. uniprot
Match: A0A6T5LL28_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6T5LL28_HETAK)

HSP 1 Score: 318 bits (815), Expect = 6.120e-106
Identity = 153/205 (74.63%), Postives = 175/205 (85.37%), Query Frame = 1
Query:   22 QFVKGNICSSDLMLYILREEKIDTILHFAAQTHVDNSFGNSFQFTQNNIYGTHVLLESAKKVGIKRFIHVSTDEVYGEGEHDQEPMFEDHVLEPTNPYAATKAGAEFIAKAYFRSFNLPVVITRGNNVYGPHQYPEKLIPKFINQLMRGKKLTIHGTGENTRNFLYVKDVATAFEKILHEAVEGHIYNIGGSNEVSVLQVAKDLM 636
            +FVKG+ICS DL+ +IL  EKIDTI+HFAAQTHVDNSFGNSF F++NNIYGTHVLLESAK+  IKRF+H STDEVYGEGE D  PM E+HVLEPTNPYAATKA AEF+ K+Y RSFNLPV+ITRGNNVYGPHQYPEKLIPKFINQL  G+ LT+HG GEN RNFLYV+DVA AFE +L  A  G +YNIGGSNE++V+QV   L+
Sbjct:   75 KFVKGDICSPDLVNHILATEKIDTIVHFAAQTHVDNSFGNSFAFSRNNIYGTHVLLESAKQANIKRFVHCSTDEVYGEGEIDGAPMGEEHVLEPTNPYAATKAAAEFLVKSYNRSFNLPVIITRGNNVYGPHQYPEKLIPKFINQLRTGRSLTVHGNGENMRNFLYVEDVARAFETVLRRAEVGKVYNIGGSNELTVMQVTDRLL 279          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig70220.14682.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LB01_ECTSI1.300e-13290.78NAD(P)-bd_dom domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KQM4_9PHAE4.830e-13290.29NAD(P)-bd_dom domain-containing protein n=1 Tax=Ec... [more]
A0A836C9V8_9STRA4.060e-11880.58Dtdp-glucose 4,6-dehydratase n=1 Tax=Tribonema min... [more]
W7TPP3_9STRA2.930e-11279.13Rhamnose biosynthetic enzyme expressed n=3 Tax=Mon... [more]
A0A7S2CKW6_9STRA6.880e-11177.07Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A4D9D847_9STRA4.170e-10976.21NAD(P)-bd_dom domain-containing protein n=2 Tax=Mo... [more]
A0A7S2RRE1_9STRA1.880e-10776.47Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
F0Y3X2_AURAN4.010e-10773.91NAD(P)-bd_dom domain-containing protein (Fragment)... [more]
A0A6V2K0F2_9STRA4.580e-10675.48Hypothetical protein n=3 Tax=Ditylum brightwellii ... [more]
A0A6T5LL28_HETAK6.120e-10674.63Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig70220contigH-elongata_contig70220:219..2729 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score388.7
Seed ortholog evalue1.8e-105
Seed eggNOG ortholog2880.D8LB01
Preferred nameGAL102
KEGG rclassRC00402
KEGG koko:K01710,ko:K12450
KEGG ReactionR00293,R06513
KEGG Pathwayko00520,ko00521,ko00523,ko00525,ko01055,ko01130,map00520,map00521,map00523,map00525,map01055,map01130
KEGG ModuleM00793
GOsGO:0003674,GO:0003824,GO:0006139,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008460,GO:0009225,GO:0009987,GO:0016829,GO:0016835,GO:0016836,GO:0034641,GO:0044237,GO:0044238,GO:0044281,GO:0046483,GO:0055086,GO:0071704,GO:1901135,GO:1901360
EggNOG free text desc.dTDP-glucose 4,6-dehydratase activity
EggNOG OGsCOG1088@1,KOG0747@2759
EC4.2.1.46,4.2.1.76
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptiondTDP-glucose 4,6-dehydratase
Ec32 orthologEc-27_005770.1
Exons4
Model size642
Cds size642
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig70220.14682.1prot_H-elongata_contig70220.14682.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig70220 219..2729 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931100.706866-CDS-H-elongata_contig70220:218..4221622931100.706866-CDS-H-elongata_contig70220:218..422Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70220 219..422 +
1691679698.2533307-CDS-H-elongata_contig70220:218..4221691679698.2533307-CDS-H-elongata_contig70220:218..422Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70220 219..422 +
1622931100.718892-CDS-H-elongata_contig70220:865..10231622931100.718892-CDS-H-elongata_contig70220:865..1023Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70220 866..1023 +
1691679698.2707517-CDS-H-elongata_contig70220:865..10231691679698.2707517-CDS-H-elongata_contig70220:865..1023Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70220 866..1023 +
1622931100.7297707-CDS-H-elongata_contig70220:1411..15421622931100.7297707-CDS-H-elongata_contig70220:1411..1542Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70220 1412..1542 +
1691679698.2784612-CDS-H-elongata_contig70220:1411..15421691679698.2784612-CDS-H-elongata_contig70220:1411..1542Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70220 1412..1542 +
1622931100.7458816-CDS-H-elongata_contig70220:2580..27291622931100.7458816-CDS-H-elongata_contig70220:2580..2729Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70220 2581..2729 +
1691679698.285973-CDS-H-elongata_contig70220:2580..27291691679698.285973-CDS-H-elongata_contig70220:2580..2729Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70220 2581..2729 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig70220.14682.1

>prot_H-elongata_contig70220.14682.1 ID=prot_H-elongata_contig70220.14682.1|Name=mRNA_H-elongata_contig70220.14682.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=214bp
PSRSDRRQFVKGNICSSDLMLYILREEKIDTILHFAAQTHVDNSFGNSFQ
FTQNNIYGTHVLLESAKKVGIKRFIHVSTDEVYGEGEHDQEPMFEDHVLE
PTNPYAATKAGAEFIAKAYFRSFNLPVVITRGNNVYGPHQYPEKLIPKFI
NQLMRGKKLTIHGTGENTRNFLYVKDVATAFEKILHEAVEGHIYNIGGSN
EVSVLQVAKDLMR*
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mRNA from alignment at H-elongata_contig70220:219..2729+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig70220.14682.1 ID=mRNA_H-elongata_contig70220.14682.1|Name=mRNA_H-elongata_contig70220.14682.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2511bp|location=Sequence derived from alignment at H-elongata_contig70220:219..2729+ (Himanthalia elongata Himel1 dioecious)
CCTTCTCGATCCGATCGGCGCCAGTTTGTGAAGGGTAACATCTGCTCGTC GGACCTGATGCTGTACATACTCCGGGAGGAGAAGATCGACACCATTTTGC ACTTCGCGGCGCAGACGCACGTGGACAACTCCTTCGGCAACTCCTTTCAG TTCACGCAGAACAACATCTACGGGACGCACGTTTTGCTAGAGAGTGCCAA AAAGGTGGGATGGGGTGGTTGGGGAGGGGGGGGAGCTGGTTGTCTTGTAG TCTTGCACGAGGTTAAACTGTGGTGAGAAAATGGGGGTGAGCCTTCGTTA TGAATCATCCAAGGCGGTTCGGAAAAGAGGTCGTCGTGCCAGTTGAGGCA AGTACCGAATGAAGTGTGTAATTATTAAATTACACATAACCGCACAATCT GGCCCTGTCATGCTATAATAGTCATAGTCCTTCTAGGCTACTCTCGCATT GATACTCCCAATGGGAGATCATTCATGTTTGCTACAAAAACTTCTGATCA GACGTGACGTGGGTATGTATGACATCATCACGTCATCATATATAGCTGAG TATGGATCAACCGGATTTGGTTGCCTCATGCTTAGAACACGGGTGGTTTA ACCCGTCTCCTACTGGGTCTCTTCTAATCGTTCATTTCCGTTTCCAGGTG GGTATCAAACGGTTCATCCACGTCTCCACCGACGAGGTATACGGGGAGGG GGAGCACGATCAAGAGCCAATGTTCGAGGATCACGTCCTGGAGCCCACGA ACCCGTACGCAGCGACCAAGGCCGGCGCGGAGTTCATAGCGAAGGCGTAT TTCCGGTAAGGGGGTGAGAGGAAGAAAAGGACGGGACTGGCTGTGATATA ACGAAGCGGGAGCGGAGGGGTTATTAGTCCCGTTTTTATTTTCTGGGACC ATTCCGAAGAACGGTCCTAGAACGGTCAAGAACGGTGGTATCGCTACGTA GTGCAGTGACGATTACACAAGGCGTTTGGGATGCATCCCCGATCCCCTGA TCTAGTTTCGCCTCCGCCGGGGACAGGGTGAAGGTAGTATTGTGGTACTA TGGTACTCGAGCGCAAGCGGCGAGATGTTGCTGTTTGAAAACCGACGAAC CAAAAAAGAAACCGACAGGGTGACTCTTTCGTCGATAGTCAATCTCGTCC TGGTTGTGTATTTTTTGTTTTATTTTCTCTTTTCGTCCGGTAGGTCGTTC AACCTTCCTGTGGTGATCACGCGGGGGAACAATGTCTACGGACCGCACCA GTACCCCGAGAAGCTTATCCCCAAGTTCATCAATCAGCTCATGAGGGGGA AGAAACTTACCATCCACGGCACAGGTATGCCTCCCCGGTTGGAAGCACAT TCTACGCGTGCCTTTCCATATCCTGTCCTGCCCTCTCCCCCACATGAAAC ATGCAGGCGCTTTAGAAAATCGCTCGATATTTTAAAAAAGAGAGAGTATG TGTGTGTGTATGTATGTGTATGTGTGGCTCGTTGACGTTTTCAGGGAAGT ACCTTCGCACTTTTTCTAGGAAATTTCTTGGCGATATATCTCATACCTTA TATCTTATATCTTATATCTTATATCTTATATCTCCCCTGTGGCGACTTGA TTGGGGCGTGGCGTTGCGTGCTTCTCGAAATGATATCGACGATGGTAATC CCCGCTCACAGAAAGCAGCGCAATGTATATGTTCATGACGTCATCACATT TAGCAGAGTAAAATCAACCGTATTTGGTTGCCTCCTGCTTGTGGTCAGCT GAAAAGGGGAAATTAATTTTCCGTGTCCCCGTTCGCGCTTGAAAATATAG TCTCGCGAGACGAGTTCGGCAGATGGGTTCGGCAGTCCCGTCCCGCGCCA GCCTGCTCATCCGCCAAACACAGGCTGAATCTGGTGCTTACTCCCGGGAT CCATTCGATCCTCTCGTTTTCCGCGACGGCGTCCATCTCTACCGTCAAAC CGCCATCGGGACAATCCCAATTTCATCAGTTCACGCAATTGCGTGCCGAT GGCATTGACCACCGAGATTCCGCCGGCACTGAGCCAATAGTGCTCAAAGT ATAGCGTGAGTAACGGGTGCAGCCTATTCAGGTAACCCCATGGACCAATT ATTGTGCGACTTTCTTTCCCCACACCCACTCCAGGACATATGCTATAGTG GACATATGCTATAGTGGACATATGCTATCGAGACAGTTACCGACAGTATC GGAGCCCAGCAGAGTTCGTGTGATTCCTTGTATTCGCTGCCTCACTTGGA CGCTGTTTTGGAAACCCCTCGCGGCCTCACGGAGGTGTCGCGTGGGGAGG GGGGTAAGTAGGGAACGGGTACGACGCCGATGATAACTTATGATAATGTG TGGGTGCGGCAGGCGAAAATACGAGGAATTTTCTGTACGTGAAGGACGTG GCGACGGCGTTCGAAAAGATTCTCCACGAGGCGGTCGAGGGCCACATCTA CAATATCGGAGGGTCGAACGAGGTTTCTGTGCTCCAAGTGGCCAAGGACC TAATGAGGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig70220:219..2729+

>mRNA_H-elongata_contig70220.14682.1 ID=mRNA_H-elongata_contig70220.14682.1|Name=mRNA_H-elongata_contig70220.14682.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1284bp|location=Sequence derived from alignment at H-elongata_contig70220:219..2729+ (Himanthalia elongata Himel1 dioecious)
CCTTCTCGATCCGATCGGCGCCAGTTTGTGAAGGGTAACATCTGCTCGTC
GGACCTGATGCTGTACATACTCCGGGAGGAGAAGATCGACACCATTTTGC
ACTTCGCGGCGCAGACGCACGTGGACAACTCCTTCGGCAACTCCTTTCAG
TTCACGCAGAACAACATCTACGGGACGCACGTTTTGCTAGAGAGTGCCAA
AAAGCCTTCTCGATCCGATCGGCGCCAGTTTGTGAAGGGTAACATCTGCT
CGTCGGACCTGATGCTGTACATACTCCGGGAGGAGAAGATCGACACCATT
TTGCACTTCGCGGCGCAGACGCACGTGGACAACTCCTTCGGCAACTCCTT
TCAGTTCACGCAGAACAACATCTACGGGACGCACGTTTTGCTAGAGAGTG
CCAAAAAGGTGGGTATCAAACGGTTCATCCACGTCTCCACCGACGAGGTA
TACGGGGAGGGGGAGCACGATCAAGAGCCAATGTTCGAGGATCACGTCCT
GGAGCCCACGAACCCGTACGCAGCGACCAAGGCCGGCGCGGAGTTCATAG
CGAAGGCGTATTTCCGGTGGGTATCAAACGGTTCATCCACGTCTCCACCG
ACGAGGTATACGGGGAGGGGGAGCACGATCAAGAGCCAATGTTCGAGGAT
CACGTCCTGGAGCCCACGAACCCGTACGCAGCGACCAAGGCCGGCGCGGA
GTTCATAGCGAAGGCGTATTTCCGGTCGTTCAACCTTCCTGTGGTGATCA
CGCGGGGGAACAATGTCTACGGACCGCACCAGTACCCCGAGAAGCTTATC
CCCAAGTTCATCAATCAGCTCATGAGGGGGAAGAAACTTACCATCCACGG
CACAGGTCGTTCAACCTTCCTGTGGTGATCACGCGGGGGAACAATGTCTA
CGGACCGCACCAGTACCCCGAGAAGCTTATCCCCAAGTTCATCAATCAGC
TCATGAGGGGGAAGAAACTTACCATCCACGGCACAGGCGAAAATACGAGG
AATTTTCTGTACGTGAAGGACGTGGCGACGGCGTTCGAAAAGATTCTCCA
CGAGGCGGTCGAGGGCCACATCTACAATATCGGAGGGTCGAACGAGGTTT
CTGTGCTCCAAGTGGCCAAGGACCTAATGAGGTAAGCGAAAATACGAGGA
ATTTTCTGTACGTGAAGGACGTGGCGACGGCGTTCGAAAAGATTCTCCAC
GAGGCGGTCGAGGGCCACATCTACAATATCGGAGGGTCGAACGAGGTTTC
TGTGCTCCAAGTGGCCAAGGACCTAATGAGGTAA
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