mRNA_H-elongata_contig70204.14681.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig70204.14681.1
Unique NamemRNA_H-elongata_contig70204.14681.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig70204.14681.1 vs. uniprot
Match: D7FJ92_ECTSI (ER membrane protein complex subunit 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJ92_ECTSI)

HSP 1 Score: 340 bits (873), Expect = 1.910e-107
Identity = 168/202 (83.17%), Postives = 186/202 (92.08%), Query Frame = 1
Query:    1 ASEPVQLLVSESWVVCTYWSAVSQRTEISTLSLYEGMIDKYGLSPFNRPEWKEDFTSFESRAPIVLQQTFIFPYPVTTLGVTLSQQGITAKNILVGTKLGQVVSVDRRFLDPRRPLEEPSKEQKDEKLIQYTPYLPVVPNQVLSYYKVIERLDRVLTEPTGLESTSLVLALGLDIFGTRVAPSKAYDILDPNFNYALLVLVL 606
            A+EPV + VSESWVV +YWSAVS RTE+STLSLYEGMIDKYGLSPFNRPEWKE+F+SFESR PIVLQ+TFIFP PVT LG+TL+Q GIT+KNILVGT +GQVVS+DRRFLDPRRP EEP+K +K+EKLIQY PYLPVVP QVLSY+KVIER+DRVLTEPTGLESTSLVLALGLDIFG RVAPSK YD+LDPNFNYALL LVL
Sbjct:  838 AAEPVHMQVSESWVVYSYWSAVSHRTEMSTLSLYEGMIDKYGLSPFNRPEWKEEFSSFESRVPIVLQKTFIFPLPVTALGITLTQYGITSKNILVGTAIGQVVSLDRRFLDPRRPQEEPTKTEKEEKLIQYQPYLPVVPTQVLSYHKVIERVDRVLTEPTGLESTSLVLALGLDIFGARVAPSKTYDMLDPNFNYALLALVL 1039          
BLAST of mRNA_H-elongata_contig70204.14681.1 vs. uniprot
Match: A0A7S2Y1Q6_9STRA (ER membrane protein complex subunit 1 n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y1Q6_9STRA)

HSP 1 Score: 221 bits (563), Expect = 1.430e-69
Identity = 105/199 (52.76%), Postives = 147/199 (73.87%), Query Frame = 1
Query:   10 PVQLLVSESWVVCTYWSAVSQRTEISTLSLYEGMIDKYGLSPFNRPEWKEDFTSFESRAPIVLQQTFIFPYPVTTLGVTLSQQGITAKNILVGTKLGQVVSVDRRFLDPRRPLEEPSKEQKDEKLIQYTPYLPVVPNQVLSYYKVIERLDRVLTEPTGLESTSLVLALGLDIFGTRVAPSKAYDILDPNFNYALLVLVL 606
            PVQ++  E+WVV +YW+A + RTE+ TL+LYEG IDK+GL+PFN+PE +  F+SF S  PIVLQ+TFIFP+ + +LGVT S   +T++++LVG   GQVVS+DRR LDPRRP   P K+++ E L +Y P+LPV P  V++Y + +ER+D + T P  LEST L+L  GLDI+  R+ PS+ +D+L  +FNY LLV +L
Sbjct:   27 PVQMVAFENWVVYSYWNAKAHRTEMGTLTLYEGFIDKHGLNPFNQPEQETTFSSFNSPPPIVLQKTFIFPHAIRSLGVTRSTHAVTSRHVLVGLHNGQVVSLDRRLLDPRRPDHNPKKDEQAEGLKRYDPFLPVTPTLVVTYGRTVERMDAIHTAPARLESTCLMLTTGLDIYSMRITPSQTFDLLAEDFNYILLVTIL 225          
BLAST of mRNA_H-elongata_contig70204.14681.1 vs. uniprot
Match: A0A7R9YCV5_9STRA (ER membrane protein complex subunit 1 n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YCV5_9STRA)

HSP 1 Score: 199 bits (505), Expect = 1.880e-55
Identity = 90/202 (44.55%), Postives = 142/202 (70.30%), Query Frame = 1
Query:    1 ASEPVQLLVSESWVVCTYWSAVSQRTEISTLSLYEGMIDKYGLSPFNRPEWKEDFTSFESRAPIVLQQTFIFPYPVTTLGVTLSQQGITAKNILVGTKLGQVVSVDRRFLDPRRPLEEPSKEQKDEKLIQYTPYLPVVPNQVLSYYKVIERLDRVLTEPTGLESTSLVLALGLDIFGTRVAPSKAYDILDPNFNYALLVLVL 606
            A+EP  + + E+W++ +YW+   +RTE+  +SL+EG + + GL+PFN+PE    F++F    P+ +Q++F FP+ +T LG+T +  GIT +  ++G + GQV  +DRR LDPRRP++ P K QK+E L+QYTP+LP+   + ++Y   I  LD++ T P  LEST+LVLA G+D+FGTR  P+K++D+L  +FN  LL++VL
Sbjct:  800 AAEPFHVTLHENWIIYSYWNYRVRRTEVGAISLFEGHVARNGLNPFNKPERSSIFSAFGDEPPVAMQRSFSFPHGITALGITKTAAGITPRACIIGMESGQVFMLDRRLLDPRRPMDAPKKSQKEEGLVQYTPHLPLHSTRFVNYNTSIVGLDKIFTAPARLESTTLVLAAGVDLFGTRTTPAKSFDLLSADFNKPLLLVVL 1001          
BLAST of mRNA_H-elongata_contig70204.14681.1 vs. uniprot
Match: A0A7S2DLI3_9STRA (ER membrane protein complex subunit 1 n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DLI3_9STRA)

HSP 1 Score: 191 bits (486), Expect = 7.310e-53
Identity = 93/202 (46.04%), Postives = 142/202 (70.30%), Query Frame = 1
Query:    1 ASEPVQLLVSESWVVCTYWSAVSQRTEISTLSLYEGMIDKYGLSPFNRPEWKEDFTSFESRAPIVLQQTFIFPYPVTTLGVTLSQQGITAKNILVGTKLGQVVSVDRRFLDPRRPLEEPSKEQKDEKLIQYTPYLPVVPNQVLSYYKVIERLDRVLTEPTGLESTSLVLALGLDIFGTRVAPSKAYDILDPNFNYALLVLVL 606
            AS P  + +SE+WVV +YW+  + RTE+STLSLYEG+ID++GL+PF  PE ++ F S  + AP+V+Q+T+IFP  +T+L  T++ +GIT+KN+L+  + GQV+S+ RRFLDPRRP   P+  +K E L QY   LPV+P  +++  +    L  +   P  +ESTSLV A+G+D++ TR +PSK +D+L  +FN  +L+ +L
Sbjct:  800 ASGPTHMTISENWVVYSYWNTKAHRTELSTLSLYEGIIDRFGLNPFKVPEQEDTFNSLTAPAPVVMQRTYIFPKAITSLSNTVTARGITSKNLLIALETGQVMSLHRRFLDPRRPNGPPTAAEKSEGLQQYAHILPVMPLAMVTNNETALGLTDLYVTPAVIESTSLVFAVGIDVYFTRTSPSKTFDLLASDFNRPMLLTLL 1001          
BLAST of mRNA_H-elongata_contig70204.14681.1 vs. uniprot
Match: A0A835YVX9_9STRA (ER membrane protein complex subunit 1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVX9_9STRA)

HSP 1 Score: 191 bits (486), Expect = 8.180e-53
Identity = 101/240 (42.08%), Postives = 146/240 (60.83%), Query Frame = 1
Query:    1 ASEPVQLLVSESWVVCTYWSAVSQRTEISTLSLYEGMIDKYGLSPFNRPEWKEDFTSFESRAPIVLQQTFIFPYPVTTLGVTLSQQGITAKNILVGTKLGQVVSVDRRFLDPRRPLEEPSKEQKDEKLIQYTPYLPVVPNQVLSYYKVIERLDRVLTEPTGLESTSLVLALGLDIFG--------------------------------------TRVAPSKAYDILDPNFNYALLVLVL 606
            A  PV   +SE+ VVCT+WS  ++RTE+ +LSLYEGMI +YGL P  +P+    F+SF++  P+VL + +  P+ VT LG+ L+  GITAK+++     G +  +DRR+LDPRRP+ EPS  +KDE+L+Q+ P+LPV    VL+Y   + R  R++T PTGLESTS++LA GL+++G                                      TRV PSK +D+L PNFNY LL++V+
Sbjct:  845 AGLPVHCSISENNVVCTHWSVHARRTEVLSLSLYEGMIGRYGLGPTRQPQRAAHFSSFDAPPPVVLHRAYTLPHAVTALGLPLTSHGITAKSLVAALDGGLLFLLDRRWLDPRRPVAEPSAAEKDERLVQWQPFLPVSRQAVLTYGGEVARASRIVTAPTGLESTSVLLATGLELWGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMFCTRVTPSKTFDLLAPNFNYGLLLMVI 1084          
BLAST of mRNA_H-elongata_contig70204.14681.1 vs. uniprot
Match: A0A8K1CP22_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CP22_PYTOL)

HSP 1 Score: 191 bits (485), Expect = 8.920e-53
Identity = 92/202 (45.54%), Postives = 146/202 (72.28%), Query Frame = 1
Query:    4 SEPVQLLVSESWVVCTYWSAVSQRTEISTLSLYEGMIDKYGLSPFNRPEWKEDFTSFESRAPIVLQQTFIFPYPVTTLGVTLSQQGITAKNILVGTKLGQVVSVDRRFLDPRRPLEEPSKEQKDEKLIQYTPYLPVVPN--QVLSYYKVIERLDRVLTEPTGLESTSLVLALGLDIFGTRVAPSKAYDILDPNFNYALLVLV 603
            SEPVQ++ SE WVV TYW++  +RTE+ +LSLY+G +  + L+ + RP W E  +S++ RAP VLQ++F+FP  ++TLGVT++ +GIT + +LVG + GQV  + R  ++PR+P + P+ E+++E L QY+P +P+  N   +++Y + +  L  + T P  LEST+L++A GLD+F  R+AP+KA+D+L P+FNY LLVL+
Sbjct:  751 SEPVQMVQSEHWVVYTYWNSKDKRTELVSLSLYDGAVGTHSLNLWKRPSWNEVRSSYDPRAPFVLQKSFVFPAKISTLGVTVTSRGITPQYVLVGMENGQVFKLSRALINPRQPEKPPTPEEQNEGLGQYSPLIPLHHNLYSMVTYNQTVANLKAISTTPVELESTTLMVAHGLDMFYVRMAPAKAFDVLPPDFNYELLVLL 952          
BLAST of mRNA_H-elongata_contig70204.14681.1 vs. uniprot
Match: A0A024UWQ1_9STRA (ER membrane protein complex subunit 1 n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UWQ1_9STRA)

HSP 1 Score: 188 bits (477), Expect = 1.090e-51
Identity = 91/203 (44.83%), Postives = 143/203 (70.44%), Query Frame = 1
Query:    1 ASEPVQLLVSESWVVCTYWSAVSQRTEISTLSLYEGMIDKYGLSPFNRPEWKEDFTSFESRAPIVLQQTFIFPYPVTTLGVTLSQQGITAKNILVGTKLGQVVSVDRRFLDPRRPLEEPSKEQKDEKLIQYTPYLPVVPN--QVLSYYKVIERLDRVLTEPTGLESTSLVLALGLDIFGTRVAPSKAYDILDPNFNYALLVLV 603
            A+EPV ++ SE+WVV ++WS  S+RTE+ +L+L EG +   GL+P+ +P W  + +SFE + P+VLQ++FI+P  ++ LGVT++ QGIT + I+V    GQ+  + R F+DPR P   P+ EQ +E L+QYTPY+PV+ N   +++Y + +  + R++T P  LESTSL  A GLD+F  R+AP+ A+D+L  +FN+ LL+L+
Sbjct:  746 AAEPVHVVQSENWVVYSFWSTKSKRTELVSLTLVEGGVPATGLNPWQQPSWASEKSSFEPKLPVVLQKSFIYPASISALGVTVTNQGITPQYIVVAQTNGQLFKLARNFIDPRVPDGPPTPEQLNEGLLQYTPYVPVLANALNMITYNQTVVNIRRIVTAPALLESTSLTFAYGLDLFYVRLAPANAFDVLPSDFNFELLLLL 948          
BLAST of mRNA_H-elongata_contig70204.14681.1 vs. uniprot
Match: A0A662XY72_9STRA (ER membrane protein complex subunit 1 n=3 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XY72_9STRA)

HSP 1 Score: 187 bits (476), Expect = 1.580e-51
Identity = 86/203 (42.36%), Postives = 147/203 (72.41%), Query Frame = 1
Query:    1 ASEPVQLLVSESWVVCTYWSAVSQRTEISTLSLYEGMIDKYGLSPFNRPEWKEDFTSFESRAPIVLQQTFIFPYPVTTLGVTLSQQGITAKNILVGTKLGQVVSVDRRFLDPRRPLEEPSKEQKDEKLIQYTPYLPVV--PNQVLSYYKVIERLDRVLTEPTGLESTSLVLALGLDIFGTRVAPSKAYDILDPNFNYALLVLV 603
            A+ PV+++ SE+W+V ++W+A  +RTE+ +LSL++G +  + L+P+ RP W +  +S++S+AP VLQ++FI+P  +T+LGVT++  GIT +++LVG + GQ+  + R F+DPR+P +  + E++ E L+ Y+P +PV   P  +L+Y K +E LD + T P  LEST+LV A GLD+F  R+ P+K++D+L  +FN+ +L+L+
Sbjct:  769 ATGPVRMVQSENWLVYSFWNAKEKRTELVSLSLFDGAVGMHSLNPWKRPAWTDSRSSYDSKAPFVLQKSFIYPTKITSLGVTVTAHGITPQSVLVGMETGQIFKLARNFIDPRQPEKPLTPEEQAEGLMMYSPLVPVYNRPQAMLTYNKTVENLDSISTAPAELESTTLVFAHGLDMFYVRMTPAKSFDLLPSDFNHEMLILL 971          
BLAST of mRNA_H-elongata_contig70204.14681.1 vs. uniprot
Match: A0A0W8DIT2_PHYNI (ER membrane protein complex subunit 1 n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8DIT2_PHYNI)

HSP 1 Score: 182 bits (463), Expect = 4.270e-51
Identity = 84/203 (41.38%), Postives = 145/203 (71.43%), Query Frame = 1
Query:    1 ASEPVQLLVSESWVVCTYWSAVSQRTEISTLSLYEGMIDKYGLSPFNRPEWKEDFTSFESRAPIVLQQTFIFPYPVTTLGVTLSQQGITAKNILVGTKLGQVVSVDRRFLDPRRPLEEPSKEQKDEKLIQYTPYLPVV--PNQVLSYYKVIERLDRVLTEPTGLESTSLVLALGLDIFGTRVAPSKAYDILDPNFNYALLVLV 603
            A+ PV+++ SE+W+V +YW++  +RTE+ +LSL++G +  + L+P+ RP W    +SF+S+AP VLQ++FI+P  +T+LGVT++  GIT +++LVG + GQ+  + R F+DPR+P +  + E++ E L+ Y+P +PV   P  +L+Y + +E L+ + T    LEST+LV A GLD+F  R+ P+K++D+L  +FN+ +L+L+
Sbjct:  362 ATGPVRMVQSENWLVYSYWNSKEKRTEMVSLSLFDGAVGMHSLNPWKRPSWTSSRSSFDSKAPFVLQKSFIYPTKITSLGVTVTAHGITPQSVLVGMETGQIFKLTRNFIDPRQPEKPLTPEEQAEGLMMYSPLVPVYNRPQAMLTYNRTVENLNSISTAAAELESTTLVFAHGLDMFYVRMTPAKSFDLLPSDFNHEMLILL 564          
BLAST of mRNA_H-elongata_contig70204.14681.1 vs. uniprot
Match: W7TWI1_9STRA (ER membrane protein complex subunit 1 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TWI1_9STRA)

HSP 1 Score: 186 bits (472), Expect = 5.970e-51
Identity = 97/203 (47.78%), Postives = 144/203 (70.94%), Query Frame = 1
Query:   10 PVQLLVSESWVVCTYWSAVSQRTEISTLSLYEGMIDKYGLSPFNRPEWKEDFTSFESRA-PIVLQQTFIFPYPVTTLGVTLSQQGITAKNILVGTKLGQVVSVDRRFLDPRRPLEEP-SKEQKDEKLIQYTPYLPVVPNQVLSYYKVIERLDRVLTEPTGLESTSLVLALG-LDIFGTRVAPS-KAYDILDPNFNYALLVLVL 606
            PV++ + E+W++ +YW+  +QRTEI +++LY+G ID+ GL  F  PE+KE  +SF+  A P+ LQQTF+FP+P+ TLG TL+ +GIT K +LVG + GQ++ +DRR LDPRRP   P SK +K E L+ Y P+LPV+P  V++Y   +  L  + T P+ LEST+L+L +G LD++ TR+ PS K +D+L   FN+ L+ LVL
Sbjct:  818 PVRMRLVENWLIYSYWNCKAQRTEIGSITLYDGFIDRKGLGLFTSPEFKERTSSFDGDASPVALQQTFLFPHPILTLGSTLTARGITTKALLVGFEPGQILLLDRRLLDPRRPTALPLSKTEKAEGLLPYAPHLPVLPPHVVTYNHTLHGLHSLYTAPSSLESTTLLLGVGDLDLYFTRLYPSHKPFDLLPDTFNHVLVSLVL 1020          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig70204.14681.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJ92_ECTSI1.910e-10783.17ER membrane protein complex subunit 1 n=2 Tax=Ecto... [more]
A0A7S2Y1Q6_9STRA1.430e-6952.76ER membrane protein complex subunit 1 n=1 Tax=Fibr... [more]
A0A7R9YCV5_9STRA1.880e-5544.55ER membrane protein complex subunit 1 n=1 Tax=Ping... [more]
A0A7S2DLI3_9STRA7.310e-5346.04ER membrane protein complex subunit 1 n=1 Tax=Dict... [more]
A0A835YVX9_9STRA8.180e-5342.08ER membrane protein complex subunit 1 n=1 Tax=Trib... [more]
A0A8K1CP22_PYTOL8.920e-5345.54Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A024UWQ1_9STRA1.090e-5144.83ER membrane protein complex subunit 1 n=2 Tax=Apha... [more]
A0A662XY72_9STRA1.580e-5142.36ER membrane protein complex subunit 1 n=3 Tax=Noth... [more]
A0A0W8DIT2_PHYNI4.270e-5141.38ER membrane protein complex subunit 1 n=1 Tax=Phyt... [more]
W7TWI1_9STRA5.970e-5147.78ER membrane protein complex subunit 1 n=2 Tax=Mono... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig70204contigH-elongata_contig70204:1429..3220 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score342.0
Seed ortholog evalue1.8e-91
Seed eggNOG ortholog2880.D7FJ92
KEGG rclassRC00047,RC00071,RC00080,RC00186,RC00218,RC00242,RC00816,RC01500
KEGG koko:K00128
KEGG ReactionR00264,R00631,R00710,R00904,R01752,R01986,R02549,R02678,R02940,R02957,R03283,R03869,R04065,R04506,R04903,R05050,R05237,R05238,R05286,R06366,R08146
KEGG Pathwayko00010,ko00053,ko00071,ko00280,ko00310,ko00330,ko00340,ko00380,ko00410,ko00561,ko00620,ko00625,ko00903,ko00981,ko01100,ko01110,ko01120,ko01130,map00010,map00053,map00071,map00280,map00310,map00330,map00340,map00380,map00410,map00561,map00620,map00625,map00903,map00981,map01100,map01110,map01120,map01130
KEGG ModuleM00135
EggNOG free text desc.protein folding in endoplasmic reticulum
EggNOG OGsKOG2103@1,KOG2103@2759
EC1.2.1.3
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Exons4
Model size606
Cds size606
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig70204.14681.1prot_H-elongata_contig70204.14681.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig70204 1429..3220 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931100.603245-CDS-H-elongata_contig70204:1428..15721622931100.603245-CDS-H-elongata_contig70204:1428..1572Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70204 1429..1572 +
1691679698.2197022-CDS-H-elongata_contig70204:1428..15721691679698.2197022-CDS-H-elongata_contig70204:1428..1572Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70204 1429..1572 +
1622931100.6229692-CDS-H-elongata_contig70204:2066..22251622931100.6229692-CDS-H-elongata_contig70204:2066..2225Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70204 2067..2225 +
1691679698.2294734-CDS-H-elongata_contig70204:2066..22251691679698.2294734-CDS-H-elongata_contig70204:2066..2225Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70204 2067..2225 +
1622931100.6463885-CDS-H-elongata_contig70204:2684..28221622931100.6463885-CDS-H-elongata_contig70204:2684..2822Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70204 2685..2822 +
1691679698.2371647-CDS-H-elongata_contig70204:2684..28221691679698.2371647-CDS-H-elongata_contig70204:2684..2822Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70204 2685..2822 +
1622931100.6641223-CDS-H-elongata_contig70204:3055..32201622931100.6641223-CDS-H-elongata_contig70204:3055..3220Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70204 3056..3220 +
1691679698.2446291-CDS-H-elongata_contig70204:3055..32201691679698.2446291-CDS-H-elongata_contig70204:3055..3220Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70204 3056..3220 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig70204.14681.1

>prot_H-elongata_contig70204.14681.1 ID=prot_H-elongata_contig70204.14681.1|Name=mRNA_H-elongata_contig70204.14681.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=202bp
ASEPVQLLVSESWVVCTYWSAVSQRTEISTLSLYEGMIDKYGLSPFNRPE
WKEDFTSFESRAPIVLQQTFIFPYPVTTLGVTLSQQGITAKNILVGTKLG
QVVSVDRRFLDPRRPLEEPSKEQKDEKLIQYTPYLPVVPNQVLSYYKVIE
RLDRVLTEPTGLESTSLVLALGLDIFGTRVAPSKAYDILDPNFNYALLVL
VL
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mRNA from alignment at H-elongata_contig70204:1429..3220+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig70204.14681.1 ID=mRNA_H-elongata_contig70204.14681.1|Name=mRNA_H-elongata_contig70204.14681.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1792bp|location=Sequence derived from alignment at H-elongata_contig70204:1429..3220+ (Himanthalia elongata Himel1 dioecious)
GCTTCTGAACCCGTTCAATTGCTGGTATCGGAGTCGTGGGTGGTGTGCAC CTACTGGAGCGCTGTCTCGCAGCGCACGGAAATATCGACGCTGAGCTTGT ACGAGGGGATGATCGACAAGTACGGTCTGAGTCCGTTTAATCGGGTAAGA TATCGACAAATACGGTGGAGTTTGAGGAGCGGGGGGGGGTGTAGGAGGGG GGTTACGACGCGACGCGCGTCCTTGGGAAATGTACTTGTCGCCTCGTTTA AGCACGTTATCCGTCGCCATCCCCAGGAGCGTCGTTTGCAACGCAGGCAA TGGGTGCCGTCACGCGTATCCCGTATCCCGTATCCCAGCTAGAGATGGCG GTCGCAGTAACGCACGATGAACCTTTGACGTTGTACAGTTATGTTTTCTA CCGTTTGAATTATTTGTTGACTACCGGTACTAAACTGTGGCCCTTCTTTG GATCTCGAAGGGGAGACCACCCGCTCCTCCTCCGGCCGCATGTAAGTTCC ATCCCTGATCCGTCATCCCGAGGATGCATGGCCAATGTTCTGCGCAAAGG AGTGCAAAACTTGAGCTCCCCAGCCCCGCTCCCGTGTCACTTTTGACGCG CATTATGCACCACGGACCGCCGTCGTACTACTGTGCAGCCGGAATGGAAG GAAGACTTCACCTCCTTCGAGTCCAGGGCCCCGATTGTGCTCCAGCAGAC GTTCATCTTCCCGTATCCCGTGACCACCCTCGGTGTGACCCTCTCACAGC AAGGAATCACGGCCAAGAACATTCTCGTGGGAACGAAACTGGGCCAGGTG CGTCGCAGCGATTTTAGTTCTCTCGAGGTCTCCCGTTACCCAGCAATTGT GTCGCACAGACGACGGACCACTCTCACGTCTTGAGAGTTTTGTATTTTCC CGAGCGAGCTAGCCAGCGATCCCGGTTGTGCTTGTCGTAAGATGCTTGGT CGGCGATCGCACCGGGGGCGGGGGCAAGCTTGCTCGCGCGCTTACGAAGA TATGCCGCAATAAGCGCCCCAAGTGCGTGCGAGGTGTGAATTTCAATGTA GTGGTGAAAGAGAGGCCCAAATATTCCGTCGTCGTACGAAGTATGGCGTA CAAAAGGTTTGCGTGGCAGTTTCCGTCGATAGCCGCGTTCAGGGATCGGG GGGGGGGGAAGGGCGCTAAACATTTCACACGTGGACACGGAGTCGAAGCA GCAGATTAATTTTCCTTCCTTCCCCTCCCCCCCTACCCCCCTACCGGGAA TATCAGGTGGTGTCGGTGGACCGGCGATTTCTTGATCCAAGGCGACCCCT GGAGGAGCCATCCAAGGAGCAGAAGGATGAAAAGCTTATCCAATACACAC CTTACCTCCCTGTGGTGCCGAATCAAGTCCTCTCCTACTACAAGGTACGA GAGTCATTTCGCGCGTTTTGCCGCGGATTGATATTTATCCCTTTTGATGG CTCAGACTTCGGGTCCGGCTCGACTGGCGCTTGCTGATGGAAATTGACTG TTTGTCTCACGCAAGCACGCACATGCGAAATTTCACTAGGAACTCCATGC TCTTCCCGGCGCCCCCGACCCTCTCCATCCCTTTCCATCCGGATGTTTTT ACTGACACCCCCCCTTCTAAAAAAAAGGTGATCGAGCGCTTAGACCGCGT TCTGACAGAGCCAACGGGACTTGAGTCCACCTCCCTGGTGCTCGCGCTAG GGCTAGATATCTTCGGTACCAGGGTGGCTCCCTCTAAGGCGTACGATATT CTCGACCCCAACTTCAACTACGCTTTGCTCGTGCTGGTGCTG
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Coding sequence (CDS) from alignment at H-elongata_contig70204:1429..3220+

>mRNA_H-elongata_contig70204.14681.1 ID=mRNA_H-elongata_contig70204.14681.1|Name=mRNA_H-elongata_contig70204.14681.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1212bp|location=Sequence derived from alignment at H-elongata_contig70204:1429..3220+ (Himanthalia elongata Himel1 dioecious)
GCTTCTGAACCCGTTCAATTGCTGGTATCGGAGTCGTGGGTGGTGTGCAC
CTACTGGAGCGCTGTCTCGCAGCGCACGGAAATATCGACGCTGAGCTTGT
ACGAGGGGATGATCGACAAGTACGGTCTGAGTCCGTTTAATCGGGCTTCT
GAACCCGTTCAATTGCTGGTATCGGAGTCGTGGGTGGTGTGCACCTACTG
GAGCGCTGTCTCGCAGCGCACGGAAATATCGACGCTGAGCTTGTACGAGG
GGATGATCGACAAGTACGGTCTGAGTCCGTTTAATCGGCCGGAATGGAAG
GAAGACTTCACCTCCTTCGAGTCCAGGGCCCCGATTGTGCTCCAGCAGAC
GTTCATCTTCCCGTATCCCGTGACCACCCTCGGTGTGACCCTCTCACAGC
AAGGAATCACGGCCAAGAACATTCTCGTGGGAACGAAACTGGGCCAGCCG
GAATGGAAGGAAGACTTCACCTCCTTCGAGTCCAGGGCCCCGATTGTGCT
CCAGCAGACGTTCATCTTCCCGTATCCCGTGACCACCCTCGGTGTGACCC
TCTCACAGCAAGGAATCACGGCCAAGAACATTCTCGTGGGAACGAAACTG
GGCCAGGTGGTGTCGGTGGACCGGCGATTTCTTGATCCAAGGCGACCCCT
GGAGGAGCCATCCAAGGAGCAGAAGGATGAAAAGCTTATCCAATACACAC
CTTACCTCCCTGTGGTGCCGAATCAAGTCCTCTCCTACTACAAGGTGGTG
TCGGTGGACCGGCGATTTCTTGATCCAAGGCGACCCCTGGAGGAGCCATC
CAAGGAGCAGAAGGATGAAAAGCTTATCCAATACACACCTTACCTCCCTG
TGGTGCCGAATCAAGTCCTCTCCTACTACAAGGTGATCGAGCGCTTAGAC
CGCGTTCTGACAGAGCCAACGGGACTTGAGTCCACCTCCCTGGTGCTCGC
GCTAGGGCTAGATATCTTCGGTACCAGGGTGGCTCCCTCTAAGGCGTACG
ATATTCTCGACCCCAACTTCAACTACGCTTTGCTCGTGCTGGTGCTGGTG
ATCGAGCGCTTAGACCGCGTTCTGACAGAGCCAACGGGACTTGAGTCCAC
CTCCCTGGTGCTCGCGCTAGGGCTAGATATCTTCGGTACCAGGGTGGCTC
CCTCTAAGGCGTACGATATTCTCGACCCCAACTTCAACTACGCTTTGCTC
GTGCTGGTGCTG
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