mRNA_H-elongata_contig70204.14681.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig70204.14681.1 vs. uniprot
Match: D7FJ92_ECTSI (ER membrane protein complex subunit 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJ92_ECTSI) HSP 1 Score: 340 bits (873), Expect = 1.910e-107 Identity = 168/202 (83.17%), Postives = 186/202 (92.08%), Query Frame = 1
Query: 1 ASEPVQLLVSESWVVCTYWSAVSQRTEISTLSLYEGMIDKYGLSPFNRPEWKEDFTSFESRAPIVLQQTFIFPYPVTTLGVTLSQQGITAKNILVGTKLGQVVSVDRRFLDPRRPLEEPSKEQKDEKLIQYTPYLPVVPNQVLSYYKVIERLDRVLTEPTGLESTSLVLALGLDIFGTRVAPSKAYDILDPNFNYALLVLVL 606
A+EPV + VSESWVV +YWSAVS RTE+STLSLYEGMIDKYGLSPFNRPEWKE+F+SFESR PIVLQ+TFIFP PVT LG+TL+Q GIT+KNILVGT +GQVVS+DRRFLDPRRP EEP+K +K+EKLIQY PYLPVVP QVLSY+KVIER+DRVLTEPTGLESTSLVLALGLDIFG RVAPSK YD+LDPNFNYALL LVL
Sbjct: 838 AAEPVHMQVSESWVVYSYWSAVSHRTEMSTLSLYEGMIDKYGLSPFNRPEWKEEFSSFESRVPIVLQKTFIFPLPVTALGITLTQYGITSKNILVGTAIGQVVSLDRRFLDPRRPQEEPTKTEKEEKLIQYQPYLPVVPTQVLSYHKVIERVDRVLTEPTGLESTSLVLALGLDIFGARVAPSKTYDMLDPNFNYALLALVL 1039
BLAST of mRNA_H-elongata_contig70204.14681.1 vs. uniprot
Match: A0A7S2Y1Q6_9STRA (ER membrane protein complex subunit 1 n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y1Q6_9STRA) HSP 1 Score: 221 bits (563), Expect = 1.430e-69 Identity = 105/199 (52.76%), Postives = 147/199 (73.87%), Query Frame = 1
Query: 10 PVQLLVSESWVVCTYWSAVSQRTEISTLSLYEGMIDKYGLSPFNRPEWKEDFTSFESRAPIVLQQTFIFPYPVTTLGVTLSQQGITAKNILVGTKLGQVVSVDRRFLDPRRPLEEPSKEQKDEKLIQYTPYLPVVPNQVLSYYKVIERLDRVLTEPTGLESTSLVLALGLDIFGTRVAPSKAYDILDPNFNYALLVLVL 606
PVQ++ E+WVV +YW+A + RTE+ TL+LYEG IDK+GL+PFN+PE + F+SF S PIVLQ+TFIFP+ + +LGVT S +T++++LVG GQVVS+DRR LDPRRP P K+++ E L +Y P+LPV P V++Y + +ER+D + T P LEST L+L GLDI+ R+ PS+ +D+L +FNY LLV +L
Sbjct: 27 PVQMVAFENWVVYSYWNAKAHRTEMGTLTLYEGFIDKHGLNPFNQPEQETTFSSFNSPPPIVLQKTFIFPHAIRSLGVTRSTHAVTSRHVLVGLHNGQVVSLDRRLLDPRRPDHNPKKDEQAEGLKRYDPFLPVTPTLVVTYGRTVERMDAIHTAPARLESTCLMLTTGLDIYSMRITPSQTFDLLAEDFNYILLVTIL 225
BLAST of mRNA_H-elongata_contig70204.14681.1 vs. uniprot
Match: A0A7R9YCV5_9STRA (ER membrane protein complex subunit 1 n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YCV5_9STRA) HSP 1 Score: 199 bits (505), Expect = 1.880e-55 Identity = 90/202 (44.55%), Postives = 142/202 (70.30%), Query Frame = 1
Query: 1 ASEPVQLLVSESWVVCTYWSAVSQRTEISTLSLYEGMIDKYGLSPFNRPEWKEDFTSFESRAPIVLQQTFIFPYPVTTLGVTLSQQGITAKNILVGTKLGQVVSVDRRFLDPRRPLEEPSKEQKDEKLIQYTPYLPVVPNQVLSYYKVIERLDRVLTEPTGLESTSLVLALGLDIFGTRVAPSKAYDILDPNFNYALLVLVL 606
A+EP + + E+W++ +YW+ +RTE+ +SL+EG + + GL+PFN+PE F++F P+ +Q++F FP+ +T LG+T + GIT + ++G + GQV +DRR LDPRRP++ P K QK+E L+QYTP+LP+ + ++Y I LD++ T P LEST+LVLA G+D+FGTR P+K++D+L +FN LL++VL
Sbjct: 800 AAEPFHVTLHENWIIYSYWNYRVRRTEVGAISLFEGHVARNGLNPFNKPERSSIFSAFGDEPPVAMQRSFSFPHGITALGITKTAAGITPRACIIGMESGQVFMLDRRLLDPRRPMDAPKKSQKEEGLVQYTPHLPLHSTRFVNYNTSIVGLDKIFTAPARLESTTLVLAAGVDLFGTRTTPAKSFDLLSADFNKPLLLVVL 1001
BLAST of mRNA_H-elongata_contig70204.14681.1 vs. uniprot
Match: A0A7S2DLI3_9STRA (ER membrane protein complex subunit 1 n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DLI3_9STRA) HSP 1 Score: 191 bits (486), Expect = 7.310e-53 Identity = 93/202 (46.04%), Postives = 142/202 (70.30%), Query Frame = 1
Query: 1 ASEPVQLLVSESWVVCTYWSAVSQRTEISTLSLYEGMIDKYGLSPFNRPEWKEDFTSFESRAPIVLQQTFIFPYPVTTLGVTLSQQGITAKNILVGTKLGQVVSVDRRFLDPRRPLEEPSKEQKDEKLIQYTPYLPVVPNQVLSYYKVIERLDRVLTEPTGLESTSLVLALGLDIFGTRVAPSKAYDILDPNFNYALLVLVL 606
AS P + +SE+WVV +YW+ + RTE+STLSLYEG+ID++GL+PF PE ++ F S + AP+V+Q+T+IFP +T+L T++ +GIT+KN+L+ + GQV+S+ RRFLDPRRP P+ +K E L QY LPV+P +++ + L + P +ESTSLV A+G+D++ TR +PSK +D+L +FN +L+ +L
Sbjct: 800 ASGPTHMTISENWVVYSYWNTKAHRTELSTLSLYEGIIDRFGLNPFKVPEQEDTFNSLTAPAPVVMQRTYIFPKAITSLSNTVTARGITSKNLLIALETGQVMSLHRRFLDPRRPNGPPTAAEKSEGLQQYAHILPVMPLAMVTNNETALGLTDLYVTPAVIESTSLVFAVGIDVYFTRTSPSKTFDLLASDFNRPMLLTLL 1001
BLAST of mRNA_H-elongata_contig70204.14681.1 vs. uniprot
Match: A0A835YVX9_9STRA (ER membrane protein complex subunit 1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVX9_9STRA) HSP 1 Score: 191 bits (486), Expect = 8.180e-53 Identity = 101/240 (42.08%), Postives = 146/240 (60.83%), Query Frame = 1
Query: 1 ASEPVQLLVSESWVVCTYWSAVSQRTEISTLSLYEGMIDKYGLSPFNRPEWKEDFTSFESRAPIVLQQTFIFPYPVTTLGVTLSQQGITAKNILVGTKLGQVVSVDRRFLDPRRPLEEPSKEQKDEKLIQYTPYLPVVPNQVLSYYKVIERLDRVLTEPTGLESTSLVLALGLDIFG--------------------------------------TRVAPSKAYDILDPNFNYALLVLVL 606
A PV +SE+ VVCT+WS ++RTE+ +LSLYEGMI +YGL P +P+ F+SF++ P+VL + + P+ VT LG+ L+ GITAK+++ G + +DRR+LDPRRP+ EPS +KDE+L+Q+ P+LPV VL+Y + R R++T PTGLESTS++LA GL+++G TRV PSK +D+L PNFNY LL++V+
Sbjct: 845 AGLPVHCSISENNVVCTHWSVHARRTEVLSLSLYEGMIGRYGLGPTRQPQRAAHFSSFDAPPPVVLHRAYTLPHAVTALGLPLTSHGITAKSLVAALDGGLLFLLDRRWLDPRRPVAEPSAAEKDERLVQWQPFLPVSRQAVLTYGGEVARASRIVTAPTGLESTSVLLATGLELWGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMFCTRVTPSKTFDLLAPNFNYGLLLMVI 1084
BLAST of mRNA_H-elongata_contig70204.14681.1 vs. uniprot
Match: A0A8K1CP22_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CP22_PYTOL) HSP 1 Score: 191 bits (485), Expect = 8.920e-53 Identity = 92/202 (45.54%), Postives = 146/202 (72.28%), Query Frame = 1
Query: 4 SEPVQLLVSESWVVCTYWSAVSQRTEISTLSLYEGMIDKYGLSPFNRPEWKEDFTSFESRAPIVLQQTFIFPYPVTTLGVTLSQQGITAKNILVGTKLGQVVSVDRRFLDPRRPLEEPSKEQKDEKLIQYTPYLPVVPN--QVLSYYKVIERLDRVLTEPTGLESTSLVLALGLDIFGTRVAPSKAYDILDPNFNYALLVLV 603
SEPVQ++ SE WVV TYW++ +RTE+ +LSLY+G + + L+ + RP W E +S++ RAP VLQ++F+FP ++TLGVT++ +GIT + +LVG + GQV + R ++PR+P + P+ E+++E L QY+P +P+ N +++Y + + L + T P LEST+L++A GLD+F R+AP+KA+D+L P+FNY LLVL+
Sbjct: 751 SEPVQMVQSEHWVVYTYWNSKDKRTELVSLSLYDGAVGTHSLNLWKRPSWNEVRSSYDPRAPFVLQKSFVFPAKISTLGVTVTSRGITPQYVLVGMENGQVFKLSRALINPRQPEKPPTPEEQNEGLGQYSPLIPLHHNLYSMVTYNQTVANLKAISTTPVELESTTLMVAHGLDMFYVRMAPAKAFDVLPPDFNYELLVLL 952
BLAST of mRNA_H-elongata_contig70204.14681.1 vs. uniprot
Match: A0A024UWQ1_9STRA (ER membrane protein complex subunit 1 n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UWQ1_9STRA) HSP 1 Score: 188 bits (477), Expect = 1.090e-51 Identity = 91/203 (44.83%), Postives = 143/203 (70.44%), Query Frame = 1
Query: 1 ASEPVQLLVSESWVVCTYWSAVSQRTEISTLSLYEGMIDKYGLSPFNRPEWKEDFTSFESRAPIVLQQTFIFPYPVTTLGVTLSQQGITAKNILVGTKLGQVVSVDRRFLDPRRPLEEPSKEQKDEKLIQYTPYLPVVPN--QVLSYYKVIERLDRVLTEPTGLESTSLVLALGLDIFGTRVAPSKAYDILDPNFNYALLVLV 603
A+EPV ++ SE+WVV ++WS S+RTE+ +L+L EG + GL+P+ +P W + +SFE + P+VLQ++FI+P ++ LGVT++ QGIT + I+V GQ+ + R F+DPR P P+ EQ +E L+QYTPY+PV+ N +++Y + + + R++T P LESTSL A GLD+F R+AP+ A+D+L +FN+ LL+L+
Sbjct: 746 AAEPVHVVQSENWVVYSFWSTKSKRTELVSLTLVEGGVPATGLNPWQQPSWASEKSSFEPKLPVVLQKSFIYPASISALGVTVTNQGITPQYIVVAQTNGQLFKLARNFIDPRVPDGPPTPEQLNEGLLQYTPYVPVLANALNMITYNQTVVNIRRIVTAPALLESTSLTFAYGLDLFYVRLAPANAFDVLPSDFNFELLLLL 948
BLAST of mRNA_H-elongata_contig70204.14681.1 vs. uniprot
Match: A0A662XY72_9STRA (ER membrane protein complex subunit 1 n=3 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XY72_9STRA) HSP 1 Score: 187 bits (476), Expect = 1.580e-51 Identity = 86/203 (42.36%), Postives = 147/203 (72.41%), Query Frame = 1
Query: 1 ASEPVQLLVSESWVVCTYWSAVSQRTEISTLSLYEGMIDKYGLSPFNRPEWKEDFTSFESRAPIVLQQTFIFPYPVTTLGVTLSQQGITAKNILVGTKLGQVVSVDRRFLDPRRPLEEPSKEQKDEKLIQYTPYLPVV--PNQVLSYYKVIERLDRVLTEPTGLESTSLVLALGLDIFGTRVAPSKAYDILDPNFNYALLVLV 603
A+ PV+++ SE+W+V ++W+A +RTE+ +LSL++G + + L+P+ RP W + +S++S+AP VLQ++FI+P +T+LGVT++ GIT +++LVG + GQ+ + R F+DPR+P + + E++ E L+ Y+P +PV P +L+Y K +E LD + T P LEST+LV A GLD+F R+ P+K++D+L +FN+ +L+L+
Sbjct: 769 ATGPVRMVQSENWLVYSFWNAKEKRTELVSLSLFDGAVGMHSLNPWKRPAWTDSRSSYDSKAPFVLQKSFIYPTKITSLGVTVTAHGITPQSVLVGMETGQIFKLARNFIDPRQPEKPLTPEEQAEGLMMYSPLVPVYNRPQAMLTYNKTVENLDSISTAPAELESTTLVFAHGLDMFYVRMTPAKSFDLLPSDFNHEMLILL 971
BLAST of mRNA_H-elongata_contig70204.14681.1 vs. uniprot
Match: A0A0W8DIT2_PHYNI (ER membrane protein complex subunit 1 n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8DIT2_PHYNI) HSP 1 Score: 182 bits (463), Expect = 4.270e-51 Identity = 84/203 (41.38%), Postives = 145/203 (71.43%), Query Frame = 1
Query: 1 ASEPVQLLVSESWVVCTYWSAVSQRTEISTLSLYEGMIDKYGLSPFNRPEWKEDFTSFESRAPIVLQQTFIFPYPVTTLGVTLSQQGITAKNILVGTKLGQVVSVDRRFLDPRRPLEEPSKEQKDEKLIQYTPYLPVV--PNQVLSYYKVIERLDRVLTEPTGLESTSLVLALGLDIFGTRVAPSKAYDILDPNFNYALLVLV 603
A+ PV+++ SE+W+V +YW++ +RTE+ +LSL++G + + L+P+ RP W +SF+S+AP VLQ++FI+P +T+LGVT++ GIT +++LVG + GQ+ + R F+DPR+P + + E++ E L+ Y+P +PV P +L+Y + +E L+ + T LEST+LV A GLD+F R+ P+K++D+L +FN+ +L+L+
Sbjct: 362 ATGPVRMVQSENWLVYSYWNSKEKRTEMVSLSLFDGAVGMHSLNPWKRPSWTSSRSSFDSKAPFVLQKSFIYPTKITSLGVTVTAHGITPQSVLVGMETGQIFKLTRNFIDPRQPEKPLTPEEQAEGLMMYSPLVPVYNRPQAMLTYNRTVENLNSISTAAAELESTTLVFAHGLDMFYVRMTPAKSFDLLPSDFNHEMLILL 564
BLAST of mRNA_H-elongata_contig70204.14681.1 vs. uniprot
Match: W7TWI1_9STRA (ER membrane protein complex subunit 1 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TWI1_9STRA) HSP 1 Score: 186 bits (472), Expect = 5.970e-51 Identity = 97/203 (47.78%), Postives = 144/203 (70.94%), Query Frame = 1
Query: 10 PVQLLVSESWVVCTYWSAVSQRTEISTLSLYEGMIDKYGLSPFNRPEWKEDFTSFESRA-PIVLQQTFIFPYPVTTLGVTLSQQGITAKNILVGTKLGQVVSVDRRFLDPRRPLEEP-SKEQKDEKLIQYTPYLPVVPNQVLSYYKVIERLDRVLTEPTGLESTSLVLALG-LDIFGTRVAPS-KAYDILDPNFNYALLVLVL 606
PV++ + E+W++ +YW+ +QRTEI +++LY+G ID+ GL F PE+KE +SF+ A P+ LQQTF+FP+P+ TLG TL+ +GIT K +LVG + GQ++ +DRR LDPRRP P SK +K E L+ Y P+LPV+P V++Y + L + T P+ LEST+L+L +G LD++ TR+ PS K +D+L FN+ L+ LVL
Sbjct: 818 PVRMRLVENWLIYSYWNCKAQRTEIGSITLYDGFIDRKGLGLFTSPEFKERTSSFDGDASPVALQQTFLFPHPILTLGSTLTARGITTKALLVGFEPGQILLLDRRLLDPRRPTALPLSKTEKAEGLLPYAPHLPVLPPHVVTYNHTLHGLHSLYTAPSSLESTTLLLGVGDLDLYFTRLYPSHKPFDLLPDTFNHVLVSLVL 1020 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig70204.14681.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig70204.14681.1 >prot_H-elongata_contig70204.14681.1 ID=prot_H-elongata_contig70204.14681.1|Name=mRNA_H-elongata_contig70204.14681.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=202bp ASEPVQLLVSESWVVCTYWSAVSQRTEISTLSLYEGMIDKYGLSPFNRPEback to top mRNA from alignment at H-elongata_contig70204:1429..3220+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig70204.14681.1 ID=mRNA_H-elongata_contig70204.14681.1|Name=mRNA_H-elongata_contig70204.14681.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1792bp|location=Sequence derived from alignment at H-elongata_contig70204:1429..3220+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig70204:1429..3220+ >mRNA_H-elongata_contig70204.14681.1 ID=mRNA_H-elongata_contig70204.14681.1|Name=mRNA_H-elongata_contig70204.14681.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1212bp|location=Sequence derived from alignment at H-elongata_contig70204:1429..3220+ (Himanthalia elongata Himel1 dioecious)back to top |