mRNA_H-elongata_contig70165.14676.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig70165.14676.1
Unique NamemRNA_H-elongata_contig70165.14676.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig70165.14676.1 vs. uniprot
Match: A0A6H5K5P3_9PHAE (Importin N-terminal domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5P3_9PHAE)

HSP 1 Score: 203 bits (517), Expect = 2.850e-59
Identity = 103/138 (74.64%), Postives = 107/138 (77.54%), Query Frame = 1 
Query:    1 GLRQLRSAKTLYILVSEFGSTRATVLGLPLEFFRRTHNAFEHSGLDQSLALSMELLGEAVKAVPDPGALADASVVEFVTNAVNACAEVLSWEFVFVEAWQIPPTQQLITPGPRWRQYLVRPDFLGVVFQVYHRVIAWG 414
            G   LRSAK L+ LVSEF STRAT LGLPLEFFR TH AF   GLDQSLALSMELLGE VK V  P AL+D SV+E VT  VN CAEVLSWEF +VEAWQIPP QQLI PGPRWR YLVRPDFLG VF VYHRV   G
Sbjct:  143 GAAALRSAKALFSLVSEFSSTRATALGLPLEFFRATHAAFNKFGLDQSLALSMELLGETVKVVATPEALSDTSVLELVTTVVNVCAEVLSWEFKYVEAWQIPPAQQLIRPGPRWRTYLVRPDFLGAVFNVYHRVRLRG 280
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BLAST of mRNA_H-elongata_contig70165.14676.1 vs. uniprot
Match: D7FX52_ECTSI (Importin N-terminal domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX52_ECTSI)

HSP 1 Score: 205 bits (521), Expect = 4.830e-59
Identity = 104/138 (75.36%), Postives = 108/138 (78.26%), Query Frame = 1 
Query:    1 GLRQLRSAKTLYILVSEFGSTRATVLGLPLEFFRRTHNAFEHSGLDQSLALSMELLGEAVKAVPDPGALADASVVEFVTNAVNACAEVLSWEFVFVEAWQIPPTQQLITPGPRWRQYLVRPDFLGVVFQVYHRVIAWG 414
            G   LRSAK L+ LVSEF STRAT LGLPLEFFR TH AF   GLDQSLALSMELLGE VKAV  P AL+D SV+E VT  VN CAEVLSWEF +VEAWQIPP QQLI PGPRWR YLVRPDFLG VF VYHRV   G
Sbjct:  143 GAAALRSAKALFSLVSEFSSTRATALGLPLEFFRATHAAFNKLGLDQSLALSMELLGETVKAVATPEALSDTSVLELVTTVVNVCAEVLSWEFKYVEAWQIPPAQQLIRPGPRWRAYLVRPDFLGAVFNVYHRVRLRG 280
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BLAST of mRNA_H-elongata_contig70165.14676.1 vs. uniprot
Match: A0A7S3PXS9_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PXS9_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 6.430e-15
Identity = 51/120 (42.50%), Postives = 62/120 (51.67%), Query Frame = 1 
Query:   40 LVSEFG-STRATVLGLPLEFFRRTHNAFEHSGLDQSLALSMELLGEAVKAVPDPGALADASVVEFVTNAVNACAEVLSWEFVFVEA-WQIPPTQQLITPGPRWRQYLVRPDFLGVVFQVY 393
            LV EFG S  A      LEF R  H AFE  G+   L +S+  L  AV  +    +L DAS        VN   +VLSWEF  +   W    +  L+ P   WR+YL+RPDFLG VFQVY
Sbjct:  231 LVGEFGGSNTAAAYNCSLEFHRLAHVAFEEKGILDLLKISINGLSGAVTKLSSDPSLVDASC-----GVVNLTIDVLSWEFGSLGGKWGRTGSSALVRPPESWREYLIRPDFLGAVFQVY 345
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BLAST of mRNA_H-elongata_contig70165.14676.1 vs. uniprot
Match: W7TRX6_9STRA (Importin-beta n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TRX6_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 5.410e-12
Identity = 53/140 (37.86%), Postives = 67/140 (47.86%), Query Frame = 1 
Query:   31 LYILVSEFGSTRATVLGLPLEFFRRTHNAFEHSGLDQSLALSMELLGEAVK----AVPDPGAL---------ADASVVEFVTNA-VNACAEVLSWEFVFVEAWQIPP--TQQLITPGPRWRQYLVRPDFLGVVFQVYHRV 402
            L  LV EF + ++  LGLPLEF R+ H AFE  GL   L + M +L   V+    A+P  G           ADA       NA V  C E LSW+F   +  Q P   T   I+P   WR YL+R D L  +  VY R+
Sbjct:  158 LLALVGEFSTAKSAALGLPLEFHRQAHKAFEDYGLLPCLEIGMGMLARGVEETLVALPPSGQAGREGGSGLTADAHGCLLRLNAIVQLCLETLSWDFTGFDPLQEPSMKTPCFISPPIAWRPYLLRLDLLEGLVSVYTRL 297
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BLAST of mRNA_H-elongata_contig70165.14676.1 vs. uniprot
Match: A0A4D9CWA8_9STRA (Importin N-terminal domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CWA8_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 5.840e-12
Identity = 53/144 (36.81%), Postives = 70/144 (48.61%), Query Frame = 1 
Query:   19 SAKTLYILVSEFGSTRATVLGLPLEFFRRTHNAFEHSGLDQSLALSMELLGEAVK----AVPDPGAL---------ADASVVEFVTNA-VNACAEVLSWEFVFVEAWQIPP--TQQLITPGPRWRQYLVRPDFLGVVFQVYHRV 402
            +++ L  LV EF + ++  LGLPLEF R+ H AFE  GL   L + M +L   V+    A+P  G           ADA       NA V  C E LSW+F   +  Q P   T   I+P   WR YL+R D L  +  VY R+
Sbjct:  154 ASEFLLALVGEFSTAKSAALGLPLEFHRQAHKAFEDYGLLPCLEIGMGMLARGVEETLVALPPSGQAGREGGSGLTADAHGSLLRLNAIVQLCLETLSWDFTGFDPLQEPSMKTPCFISPPIAWRPYLLRLDLLEGLVSVYTRL 297
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BLAST of mRNA_H-elongata_contig70165.14676.1 vs. uniprot
Match: A0A7S2ANW3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2ANW3_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 2.550e-8
Identity = 34/96 (35.42%), Postives = 51/96 (53.12%), Query Frame = 1 
Query:  118 FEHSGLDQSLALSMELLGEAVKAVPDPG-ALADASVVEFVTNAVNACAEVLSWEFVFVEAWQIPPTQQLITPGPRWRQYLVRPDFLGVVFQVYHRV 402
            FE  GL+ SL ++ME LG+A+ A      A  +  ++  +  A   C  VL+W+  +++ + IP       P   WR YLVRPD L  +F+VY  V
Sbjct:    1 FEKEGLETSLHIAMEQLGQAIGAWESRAQAGTEMRLLARLKAAGELCLAVLNWDHGWLDTYSIPGATTSNRPPQSWRSYLVRPDLLQALFRVYRAV 96
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BLAST of mRNA_H-elongata_contig70165.14676.1 vs. uniprot
Match: A0A7S4I7Z2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4I7Z2_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 2.760e-8
Identity = 50/153 (32.68%), Postives = 67/153 (43.79%), Query Frame = 1 
Query:   16 RSAKTLYILVSEFGSTRATVLG---LPLEFFRRTHNAFEH-----------SGLDQSLALSMELLGEAVKAVPDPGALA--DASVVEFVTNAVNACAEVLSWEFVFV---EAWQIPPTQQ--------LITPGPRWRQYLVRPDFLGVVFQVY 393
            RSA  L  L+ EF  T +   G   +PLEF     ++FE            + LD+ + + M  LG  V+   + G     DA  VE  +  V    +VL WEF        ++I  +          L+ P  RWR  LVRPDFLG VF VY
Sbjct:   31 RSASFLSSLLGEFSGTGSGGFGGYNMPLEFHSAVRSSFESPPNAAADGAGSAALDEVMKIGMTALGGVVRIWTEGGVNGRDDARTVELSSAIVTLNCDVLGWEFNSSGGRSTFEISSSSSSFSSGKSTLVRPPERWRDVLVRPDFLGAVFAVY 183
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BLAST of mRNA_H-elongata_contig70165.14676.1 vs. uniprot
Match: A0A7S2PDL1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PDL1_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 2.180e-5
Identity = 26/59 (44.07%), Postives = 31/59 (52.54%), Query Frame = 1 
Query:  244 VNACAEVLSWEFVFVEAW---------QIPPTQQLITPGPRWRQYLVRPDFLGVVFQVY 393
            V+   E+LSWEF    AW         Q+  +  LI P   WR YL+RPDFLG V  VY
Sbjct:   28 VSLTIEILSWEFGGGSAWNAASFASSAQVSASLVLIKPPVEWRDYLIRPDFLGAVVNVY 86
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig70165.14676.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5K5P3_9PHAE2.850e-5974.64Importin N-terminal domain-containing protein n=1 ... [more]
D7FX52_ECTSI4.830e-5975.36Importin N-terminal domain-containing protein n=1 ... [more]
A0A7S3PXS9_9STRA6.430e-1542.50Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
W7TRX6_9STRA5.410e-1237.86Importin-beta n=1 Tax=Nannochloropsis gaditana Tax... [more]
A0A4D9CWA8_9STRA5.840e-1236.81Importin N-terminal domain-containing protein n=1 ... [more]
A0A7S2ANW3_9STRA2.550e-835.42Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S4I7Z2_9STRA2.760e-832.68Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]
A0A7S2PDL1_9STRA2.180e-544.07Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig70165contigH-elongata_contig70165:927..2602 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score204.9
Seed ortholog evalue2.4e-50
Seed eggNOG ortholog2880.D7FX52
KEGG koko:K18460
EggNOG free text desc.nuclear export signal receptor activity
EggNOG OGsKOG1410@1,KOG1410@2759
Ec32 ortholog descriptionArmadillo-like helical
Ec32 orthologEc-10_004340.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Hectar predicted targeting categoryother localisation
Exons3
Model size417
Cds size417
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig70165.14676.1prot_H-elongata_contig70165.14676.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig70165 927..2602 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931100.3336802-CDS-H-elongata_contig70165:926..10821622931100.3336802-CDS-H-elongata_contig70165:926..1082Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70165 927..1082 -
1691679698.136328-CDS-H-elongata_contig70165:926..10821691679698.136328-CDS-H-elongata_contig70165:926..1082Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70165 927..1082 -
1622931100.3478975-CDS-H-elongata_contig70165:1871..19911622931100.3478975-CDS-H-elongata_contig70165:1871..1991Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70165 1872..1991 -
1691679698.1483533-CDS-H-elongata_contig70165:1871..19911691679698.1483533-CDS-H-elongata_contig70165:1871..1991Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70165 1872..1991 -
1622931100.3603046-CDS-H-elongata_contig70165:2461..26021622931100.3603046-CDS-H-elongata_contig70165:2461..2602Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70165 2462..2602 -
1691679698.157587-CDS-H-elongata_contig70165:2461..26021691679698.157587-CDS-H-elongata_contig70165:2461..2602Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70165 2462..2602 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig70165.14676.1

>prot_H-elongata_contig70165.14676.1 ID=prot_H-elongata_contig70165.14676.1|Name=mRNA_H-elongata_contig70165.14676.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=139bp
GLRQLRSAKTLYILVSEFGSTRATVLGLPLEFFRRTHNAFEHSGLDQSLA
LSMELLGEAVKAVPDPGALADASVVEFVTNAVNACAEVLSWEFVFVEAWQ
IPPTQQLITPGPRWRQYLVRPDFLGVVFQVYHRVIAWG*
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mRNA from alignment at H-elongata_contig70165:927..2602-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig70165.14676.1 ID=mRNA_H-elongata_contig70165.14676.1|Name=mRNA_H-elongata_contig70165.14676.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1676bp|location=Sequence derived from alignment at H-elongata_contig70165:927..2602- (Himanthalia elongata Himel1 dioecious)
GGTCTGCGCCAGCTGCGGAGCGCGAAGACGCTGTACATTCTCGTGTCGGA
ATTCGGCTCCACCCGCGCCACGGTCCTGGGTCTTCCGCTTGAATTCTTCC
GCCGCACGCACAACGCCTTCGAACATTCGGGACTAGATCAGGTACACGAA
TCGGGACTAGATCAGGTCCACAAACAATAGTAAACTAAGGTAAAACTATG
GTGGAAGTGTAAATATTAGACTACAAAGCAGTACAGTACTGTAGAAAGTA
CTTCTCGTCTGTTTTTTTGTTTTTGTTTTTTTTGTCTTGTTTTTCTCTTT
CTATTTTTCTATTTTCTATTTAGTTTGTTGATGTGTTGTTGGTTTTGTTT
TTAAACGACTCCGATACAAGTTTTAGCTAACAAAAATACTTTTATTTTAT
AAACGTTTTCGGTATAAGATTTAAGAAAATCAAAGCTGTTTCACTAAGTG
ACCGTTGCGCCCCCCCCCCGTCCCCCCCTGTGCCCCCCCCGTCCCTCCCA
AAATAGCTGCATTTGTAACGACTTCGTCTCGTTCGCCCAAATATGCCTGA
CGGTCAAACGAATATTATGTCCTCTACTGCACTGAATGTTGGCCAATCCA
CCGTCTCATAGAGTCTGGCCCTTTCGATGGAGCTGCTGGGAGAGGCGGTC
AAGGCTGTTCCCGACCCGGGAGCCCTGGCGGATGCCTCGGTCGTGGAGTT
CGTGACCAACGCAGTCAACGCGTGCGCCGAAGTCAGTCACACACACACAC
ACACACACATCCCCCATTGGGAGGACCAATGAATGCGAGAGTAGCCTAGA
AGAGCTATGAATAGCATCACAGTATACGGCCGGATTGCCCGGTTATTATG
TGCAATTGAATTAATGCACCTACACCGTATTGTCAGAAAGTGTCGCGACG
GTATCAATCGATCATTGATTCCAATTAGTAAGGATCCATACGACCAGCCG
AGCAGCCTAGCAGCCTAGCAATATTAGTTATGTTATGTGTAATTTAATCA
ATACCCACACGCACACACACACACACACATGGCGTTCGCCGTTCGCCGTT
CGCCGTCCGCCATTTGAAAAGTGACCTTACAATTGAATCTTCCGTTCCGT
GTTACGCTTGTATGCCCCCCCCACCAACTTGCGCCCGCCGCACGGCAACC
GTGCCGCACTGATTTAAACGGTAGAAAGTTTCATAAACCTATCCACGAAG
AGGTACACAATCAAAGTGTTTGGGTGGAGCAGCATGGTAAACGCACGGCA
GGCAGCGAGCGTAGCACACACTCTTAAAAAGAAAGCGTCTGCCAATAAGG
ATGGGCGTAACGCGGCGTGGTCCAGCATTTCTCCACGAAAGACTATGCAA
AGACCAATGCAGTATAGTACCTGGTATACATGGTAGTACAATACGAAGCA
CGCTACACAAAACACCCGACAACGCCTCCTTCCCTTTTGTGGTTCTTTTT
CGTTGTTTGTTCTGTAATTCTCGGGCGTCGCCACCCCCACCCCCCCCCCC
TAAAAAATGATGAAAAATAGGTGCTCTCGTGGGAGTTCGTGTTTGTGGAG
GCGTGGCAAATACCGCCGACGCAGCAGCTGATTACACCGGGGCCGCGGTG
GAGGCAATATCTTGTCCGACCTGACTTTCTGGGAGTCGTCTTCCAAGTCT
ATCATCGGGTGATTGCCTGGGGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig70165:927..2602-

>mRNA_H-elongata_contig70165.14676.1 ID=mRNA_H-elongata_contig70165.14676.1|Name=mRNA_H-elongata_contig70165.14676.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=834bp|location=Sequence derived from alignment at H-elongata_contig70165:927..2602- (Himanthalia elongata Himel1 dioecious)
GGTCTGCGCCAGCTGCGGAGCGCGAAGACGCTGTACATTCTCGTGTCGGA
ATTCGGCTCCACCCGCGCCACGGTCCTGGGTCTTCCGCTTGAATTCTTCC
GCCGCACGCACAACGCCTTCGAACATTCGGGACTAGATCAGGGTCTGCGC
CAGCTGCGGAGCGCGAAGACGCTGTACATTCTCGTGTCGGAATTCGGCTC
CACCCGCGCCACGGTCCTGGGTCTTCCGCTTGAATTCTTCCGCCGCACGC
ACAACGCCTTCGAACATTCGGGACTAGATCAGAGTCTGGCCCTTTCGATG
GAGCTGCTGGGAGAGGCGGTCAAGGCTGTTCCCGACCCGGGAGCCCTGGC
GGATGCCTCGGTCGTGGAGTTCGTGACCAACGCAGTCAACGCGTGCGCCG
AAAGTCTGGCCCTTTCGATGGAGCTGCTGGGAGAGGCGGTCAAGGCTGTT
CCCGACCCGGGAGCCCTGGCGGATGCCTCGGTCGTGGAGTTCGTGACCAA
CGCAGTCAACGCGTGCGCCGAAGTGCTCTCGTGGGAGTTCGTGTTTGTGG
AGGCGTGGCAAATACCGCCGACGCAGCAGCTGATTACACCGGGGCCGCGG
TGGAGGCAATATCTTGTCCGACCTGACTTTCTGGGAGTCGTCTTCCAAGT
CTATCATCGGGTGATTGCCTGGGGGTGAGTGCTCTCGTGGGAGTTCGTGT
TTGTGGAGGCGTGGCAAATACCGCCGACGCAGCAGCTGATTACACCGGGG
CCGCGGTGGAGGCAATATCTTGTCCGACCTGACTTTCTGGGAGTCGTCTT
CCAAGTCTATCATCGGGTGATTGCCTGGGGGTGA
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