mRNA_H-elongata_contig701.14666.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig701.14666.1 vs. uniprot
Match: D7FPB0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPB0_ECTSI) HSP 1 Score: 358 bits (919), Expect = 3.290e-119 Identity = 207/362 (57.18%), Postives = 252/362 (69.61%), Query Frame = 1
Query: 1 KGLFEALVKWCFNEVASLAQDCQDNLRQCHDSERAATMVPSAKKGIGGSDQKCNNG------GRSTSVVFTGGVPGGVGIGWRKKKDVEGARFSEDNLEVAMDVARTCMSMFVYLVTHGYWQRALHAGVLAHANSVPIGAGDDPHVTGSLSRLVFELSRFALTSEEGRLSFVAQGPLDAVLRCLRLGKVAQQQCALDTLTNICAVNEMKVLVFSQEVLNEVLELAAVQENVPFAAGVLFQFSLIPEWRLPLVRGGCLRLLVDAITHATGPVASPTELVVSLLRSAVATIRQITKLEGSGREVINAGGLPQLIRLSRADQEASIQRDARHALENIGHIGSHRDEERRKRGDEEENSAITVVTD 1068
+GLFEALV CFNEVAS CQ+ LRQ + E + R S+V TGG+ G G G R+K + EG RF+E+ LEVAMDVARTCM+MF +L G+ +RALHAGVLAH NSVPIGAGDDPH+TGSLS+LV +LS A+ EE RLSFV QGPLDA++RCLR G+ AQQQCALD LT +C ++EMK LVF +EVL EVL LAAVQE+V AA VL QFSL+ EWR PLVRGGC+ LLV AI HATGP A P E +L SAVA IRQITKLEG+GR +++AGGL QL+RLSR+++E +I+RDA AL++IGH G RD ER + + +E + TD
Sbjct: 21 EGLFEALVGLCFNEVASFVHGCQNYLRQRREIEGVFSSAXXXXXXXXXXXXXXXXXXXXXXXARCESIVSTGGMSAGAGAGGRRK-EAEG-RFTEEKLEVAMDVARTCMAMFAHLTARGHGRRALHAGVLAHINSVPIGAGDDPHMTGSLSQLVLDLSAVAMEGEENRLSFVGQGPLDAIMRCLRGGRAAQQQCALDALTTVCLLSEMKPLVFCREVLGEVLMLAAVQEHVQPAAFVLHQFSLLSEWRSPLVRGGCVDLLVAAIAHATGPEAPPQEEACPILESAVAAIRQITKLEGAGRVLVDAGGLSQLLRLSRSERE-NIRRDACQALKHIGHRG--RDRERDHKSESQETVEGSASTD 377
BLAST of mRNA_H-elongata_contig701.14666.1 vs. uniprot
Match: A0A6H5KGE2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGE2_9PHAE) HSP 1 Score: 121 bits (304), Expect = 1.790e-30 Identity = 64/103 (62.14%), Postives = 82/103 (79.61%), Query Frame = 1
Query: 700 QFSLIPEWRLPLVRGGCLRLLVDAITHATGPVASPTELVVSLLRSAVATIRQITKLEGSGREVINAGGLPQLIRLSRADQEASIQRDARHALENIGHIGSHRD 1008
+FSL+ EWR PLVRGGC+ LLV AI HATGP A P E +L SAVA IRQITKLEG+GR +++AGGLPQL+RLSR+++E +I+RDA AL+++GH G R+
Sbjct: 9 KFSLLSEWRSPLVRGGCVDLLVAAIAHATGPEAPPQEEACPILESAVAAIRQITKLEGAGRVLVDAGGLPQLLRLSRSERE-NIRRDACQALKHMGHRGRARE 110 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig701.14666.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig701.14666.1 >prot_H-elongata_contig701.14666.1 ID=prot_H-elongata_contig701.14666.1|Name=mRNA_H-elongata_contig701.14666.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=357bp KGLFEALVKWCFNEVASLAQDCQDNLRQCHDSERAATMVPSAKKGIGGSDback to top mRNA from alignment at H-elongata_contig701:7648..13451- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig701.14666.1 ID=mRNA_H-elongata_contig701.14666.1|Name=mRNA_H-elongata_contig701.14666.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=5804bp|location=Sequence derived from alignment at H-elongata_contig701:7648..13451- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig701:7648..13451- >mRNA_H-elongata_contig701.14666.1 ID=mRNA_H-elongata_contig701.14666.1|Name=mRNA_H-elongata_contig701.14666.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2142bp|location=Sequence derived from alignment at H-elongata_contig701:7648..13451- (Himanthalia elongata Himel1 dioecious)back to top |