prot_H-elongata_contig70076.14663.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig70076.14663.1
Unique Nameprot_H-elongata_contig70076.14663.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length107
Homology
BLAST of mRNA_H-elongata_contig70076.14663.1 vs. uniprot
Match: D8LN82_ECTSI (PB1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN82_ECTSI)

HSP 1 Score: 112 bits (280), Expect = 6.860e-28
Identity = 64/104 (61.54%), Postives = 77/104 (74.04%), Query Frame = 0
Query:    1 MVTTRLIKINFQGDSRDVTLPRPVTLVSLQGAVSSTFGADLLPRS--GKGAAEDDLCFTYKDPEGDDIVFDKEYELSLALRLCPT-LEISAVSKAERKKPSNVP 101
            M+TT  IKINFQG SRDV +P PVTL SLQ A+++ F A+L  RS  G+ A + DL FTYKDP+GDDIVFDK+ EL LA+RLCP+ LEISA  K    KP+N P
Sbjct:   15 MMTTSSIKINFQGASRDVNVPAPVTLDSLQAAIAAAFDAELPVRSPAGEAAKDTDLSFTYKDPDGDDIVFDKDSELKLAVRLCPSSLEISAALK--ESKPANKP 116          
BLAST of mRNA_H-elongata_contig70076.14663.1 vs. uniprot
Match: D8LN68_ECTSI (PB1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN68_ECTSI)

HSP 1 Score: 112 bits (279), Expect = 9.050e-27
Identity = 63/103 (61.17%), Postives = 76/103 (73.79%), Query Frame = 0
Query:    2 VTTRLIKINFQGDSRDVTLPRPVTLVSLQGAVSSTFGADLLPRS--GKGAAEDDLCFTYKDPEGDDIVFDKEYELSLALRLCP-TLEISAVSKAERKKPSNVP 101
            +TT  IKINFQG SRDV +P PVTL SLQ A++  F A+L  RS  G+ A + DL FTYKDP+GDDIVFDK+ EL+LA+RLCP +LEISA  K    KP+N P
Sbjct:    1 MTTSSIKINFQGTSRDVNVPVPVTLASLQAAIAGAFDAELPVRSPAGEAAKDTDLSFTYKDPDGDDIVFDKDSELNLAVRLCPGSLEISAAGK--ENKPANKP 101          
BLAST of mRNA_H-elongata_contig70076.14663.1 vs. uniprot
Match: D8LN66_ECTSI (PB1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN66_ECTSI)

HSP 1 Score: 108 bits (271), Expect = 7.340e-26
Identity = 61/103 (59.22%), Postives = 75/103 (72.82%), Query Frame = 0
Query:    2 VTTRLIKINFQGDSRDVTLPRPVTLVSLQGAVSSTFGADLLPRS--GKGAAEDDLCFTYKDPEGDDIVFDKEYELSLALRLCP-TLEISAVSKAERKKPSNVP 101
            +TT  IKINFQG SRDV +P PVTL SLQ  +++ F A+L  RS  G+ A + DL FTYKDP+GDDIVFDK+ EL LA+RLCP +LEISA  K   KK + +P
Sbjct:   17 MTTSSIKINFQGASRDVNVPAPVTLASLQAVIAAAFDAELPVRSPGGEAAKDTDLSFTYKDPDGDDIVFDKDSELKLAMRLCPGSLEISAAGK--EKKAAEMP 117          
BLAST of mRNA_H-elongata_contig70076.14663.1 vs. uniprot
Match: A0A6H5JQ17_9PHAE (PB1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ17_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 6.410e-25
Identity = 61/101 (60.40%), Postives = 74/101 (73.27%), Query Frame = 0
Query:    2 VTTRLIKINFQGDSRDVTLPRPVTLVSLQGAVSSTFGADLLPRS--GKGAAEDDLCFTYKDPEGDDIVFDKEYELSLALRLCPT-LEISAVSKAER--KKP 97
            +TT  IKINFQG SRDV +P PV+L SLQ A+++ F A+L  RS  G+ A + DL FTYKDP+GDDIVFDK+ EL LA+RLCP+ LEISA  K     KKP
Sbjct:   19 MTTPSIKINFQGASRDVNVPAPVSLASLQAAIAAAFDAELPVRSPAGEAAKDTDLSFTYKDPDGDDIVFDKDSELKLAVRLCPSSLEISATLKESEPAKKP 119          
BLAST of mRNA_H-elongata_contig70076.14663.1 vs. uniprot
Match: A0A6H5KAY7_9PHAE (PB1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAY7_9PHAE)

HSP 1 Score: 105 bits (263), Expect = 1.040e-24
Identity = 57/96 (59.38%), Postives = 71/96 (73.96%), Query Frame = 0
Query:    2 VTTRLIKINFQGDSRDVTLPRPVTLVSLQGAVSSTFGADLLPRS--GKGAAEDDLCFTYKDPEGDDIVFDKEYELSLALRLCP-TLEISAVSKAER 94
            +TT  IKINFQG SRDV++P P TL  LQ A+++ F  +L  RS  G+ A + DL FTYKDP+GDDIVFDK+ EL+LALRLCP +LEISA  K  +
Sbjct:   28 MTTSSIKINFQGASRDVSVPAPATLARLQAAIAAVFEVELPVRSLTGEAAKDTDLSFTYKDPDGDDIVFDKDSELNLALRLCPGSLEISAAGKENK 123          
BLAST of mRNA_H-elongata_contig70076.14663.1 vs. uniprot
Match: A0A6H5KB69_9PHAE (PB1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB69_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 2.360e-23
Identity = 59/103 (57.28%), Postives = 72/103 (69.90%), Query Frame = 0
Query:    2 VTTRLIKINFQGDSRDVTLPRPVTLVSLQGAVSSTFGADLLPRSGKGAA--EDDLCFTYKDPEGDDIVFDKEYELSLALRLCP-TLEISAVSKAERKKPSNVP 101
            +TT  IKINFQG SR+V +  P TL SLQ  +++ F A+L  RS  G A  + DL FTYKDP+GDDIVFDK+ EL+LA+RLCP +LEISA  K    KP N P
Sbjct:    1 MTTSSIKINFQGTSRNVNVQAPFTLASLQATIAAAFDAELPVRSPAGEATKDTDLSFTYKDPDGDDIVFDKDSELNLAVRLCPDSLEISAAGK--ENKPDNKP 101          
BLAST of mRNA_H-elongata_contig70076.14663.1 vs. uniprot
Match: A0A6H5JPU3_9PHAE (PB1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPU3_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 5.270e-23
Identity = 57/96 (59.38%), Postives = 68/96 (70.83%), Query Frame = 0
Query:    2 VTTRLIKINFQGDSRDVTLPRPVTLVSLQGAVSSTFGADLLPRS--GKGAAEDDLCFTYKDPEGDDIVFDKEYELSLALRLCP-TLEISAVSKAER 94
            +TT  IKI FQG SRDV +  PV L SLQ A+++ F  +L  RS  G+ A + DL FTYKDP+GDDIVFDKE EL LALRLCP +LEISA  K  +
Sbjct:   19 MTTSSIKITFQGASRDVNVRVPVMLASLQAAIAAAFDVELPARSSAGEAANDTDLSFTYKDPDGDDIVFDKESELQLALRLCPGSLEISAAGKENK 114          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig70076.14663.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D8LN82_ECTSI6.860e-2861.54PB1 domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LN68_ECTSI9.050e-2761.17PB1 domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LN66_ECTSI7.340e-2659.22PB1 domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JQ17_9PHAE6.410e-2560.40PB1 domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KAY7_9PHAE1.040e-2459.38PB1 domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KB69_9PHAE2.360e-2357.28PB1 domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JPU3_9PHAE5.270e-2359.38PB1 domain-containing protein n=1 Tax=Ectocarpus s... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.10.20.90coord: 5..89
e-value: 2.2E-5
score: 26.0
NoneNo IPR availableSUPERFAMILY54277CAD & PB1 domainscoord: 5..83

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig70076contigH-elongata_contig70076:1337..2847 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig70076.14663.1mRNA_H-elongata_contig70076.14663.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig70076 1337..2847 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig70076.14663.1 ID=prot_H-elongata_contig70076.14663.1|Name=mRNA_H-elongata_contig70076.14663.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=107bp
MVTTRLIKINFQGDSRDVTLPRPVTLVSLQGAVSSTFGADLLPRSGKGAA
EDDLCFTYKDPEGDDIVFDKEYELSLALRLCPTLEISAVSKAERKKPSNV
PQDAHDP
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