mRNA_H-elongata_contig70076.14663.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig70076.14663.1
Unique NamemRNA_H-elongata_contig70076.14663.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig70076.14663.1 vs. uniprot
Match: D8LN82_ECTSI (PB1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN82_ECTSI)

HSP 1 Score: 112 bits (280), Expect = 6.860e-28
Identity = 64/104 (61.54%), Postives = 77/104 (74.04%), Query Frame = 1 
Query:    1 MVTTRLIKINFQGDSRDVTLPRPVTLVSLQGAVSSTFGADLLPRS--GKGAAEDDLCFTYKDPEGDDIVFDKEYELSLALRLCPT-LEISAVSKAERKKPSNVP 303
            M+TT  IKINFQG SRDV +P PVTL SLQ A+++ F A+L  RS  G+ A + DL FTYKDP+GDDIVFDK+ EL LA+RLCP+ LEISA  K    KP+N P
Sbjct:   15 MMTTSSIKINFQGASRDVNVPAPVTLDSLQAAIAAAFDAELPVRSPAGEAAKDTDLSFTYKDPDGDDIVFDKDSELKLAVRLCPSSLEISAALK--ESKPANKP 116
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BLAST of mRNA_H-elongata_contig70076.14663.1 vs. uniprot
Match: D8LN68_ECTSI (PB1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN68_ECTSI)

HSP 1 Score: 112 bits (279), Expect = 9.050e-27
Identity = 63/103 (61.17%), Postives = 76/103 (73.79%), Query Frame = 1 
Query:    4 VTTRLIKINFQGDSRDVTLPRPVTLVSLQGAVSSTFGADLLPRS--GKGAAEDDLCFTYKDPEGDDIVFDKEYELSLALRLCP-TLEISAVSKAERKKPSNVP 303
            +TT  IKINFQG SRDV +P PVTL SLQ A++  F A+L  RS  G+ A + DL FTYKDP+GDDIVFDK+ EL+LA+RLCP +LEISA  K    KP+N P
Sbjct:    1 MTTSSIKINFQGTSRDVNVPVPVTLASLQAAIAGAFDAELPVRSPAGEAAKDTDLSFTYKDPDGDDIVFDKDSELNLAVRLCPGSLEISAAGK--ENKPANKP 101
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BLAST of mRNA_H-elongata_contig70076.14663.1 vs. uniprot
Match: D8LN66_ECTSI (PB1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN66_ECTSI)

HSP 1 Score: 108 bits (271), Expect = 7.340e-26
Identity = 61/103 (59.22%), Postives = 75/103 (72.82%), Query Frame = 1 
Query:    4 VTTRLIKINFQGDSRDVTLPRPVTLVSLQGAVSSTFGADLLPRS--GKGAAEDDLCFTYKDPEGDDIVFDKEYELSLALRLCP-TLEISAVSKAERKKPSNVP 303
            +TT  IKINFQG SRDV +P PVTL SLQ  +++ F A+L  RS  G+ A + DL FTYKDP+GDDIVFDK+ EL LA+RLCP +LEISA  K   KK + +P
Sbjct:   17 MTTSSIKINFQGASRDVNVPAPVTLASLQAVIAAAFDAELPVRSPGGEAAKDTDLSFTYKDPDGDDIVFDKDSELKLAMRLCPGSLEISAAGK--EKKAAEMP 117
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BLAST of mRNA_H-elongata_contig70076.14663.1 vs. uniprot
Match: A0A6H5JQ17_9PHAE (PB1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ17_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 6.410e-25
Identity = 61/101 (60.40%), Postives = 74/101 (73.27%), Query Frame = 1 
Query:    4 VTTRLIKINFQGDSRDVTLPRPVTLVSLQGAVSSTFGADLLPRS--GKGAAEDDLCFTYKDPEGDDIVFDKEYELSLALRLCPT-LEISAVSKAER--KKP 291
            +TT  IKINFQG SRDV +P PV+L SLQ A+++ F A+L  RS  G+ A + DL FTYKDP+GDDIVFDK+ EL LA+RLCP+ LEISA  K     KKP
Sbjct:   19 MTTPSIKINFQGASRDVNVPAPVSLASLQAAIAAAFDAELPVRSPAGEAAKDTDLSFTYKDPDGDDIVFDKDSELKLAVRLCPSSLEISATLKESEPAKKP 119
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BLAST of mRNA_H-elongata_contig70076.14663.1 vs. uniprot
Match: A0A6H5KAY7_9PHAE (PB1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAY7_9PHAE)

HSP 1 Score: 105 bits (263), Expect = 1.040e-24
Identity = 57/96 (59.38%), Postives = 71/96 (73.96%), Query Frame = 1 
Query:    4 VTTRLIKINFQGDSRDVTLPRPVTLVSLQGAVSSTFGADLLPRS--GKGAAEDDLCFTYKDPEGDDIVFDKEYELSLALRLCP-TLEISAVSKAER 282
            +TT  IKINFQG SRDV++P P TL  LQ A+++ F  +L  RS  G+ A + DL FTYKDP+GDDIVFDK+ EL+LALRLCP +LEISA  K  +
Sbjct:   28 MTTSSIKINFQGASRDVSVPAPATLARLQAAIAAVFEVELPVRSLTGEAAKDTDLSFTYKDPDGDDIVFDKDSELNLALRLCPGSLEISAAGKENK 123
[Close]
BLAST of mRNA_H-elongata_contig70076.14663.1 vs. uniprot
Match: A0A6H5KB69_9PHAE (PB1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB69_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 2.360e-23
Identity = 59/103 (57.28%), Postives = 72/103 (69.90%), Query Frame = 1 
Query:    4 VTTRLIKINFQGDSRDVTLPRPVTLVSLQGAVSSTFGADLLPRSGKGAA--EDDLCFTYKDPEGDDIVFDKEYELSLALRLCP-TLEISAVSKAERKKPSNVP 303
            +TT  IKINFQG SR+V +  P TL SLQ  +++ F A+L  RS  G A  + DL FTYKDP+GDDIVFDK+ EL+LA+RLCP +LEISA  K    KP N P
Sbjct:    1 MTTSSIKINFQGTSRNVNVQAPFTLASLQATIAAAFDAELPVRSPAGEATKDTDLSFTYKDPDGDDIVFDKDSELNLAVRLCPDSLEISAAGK--ENKPDNKP 101
[Close]
BLAST of mRNA_H-elongata_contig70076.14663.1 vs. uniprot
Match: A0A6H5JPU3_9PHAE (PB1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPU3_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 5.270e-23
Identity = 57/96 (59.38%), Postives = 68/96 (70.83%), Query Frame = 1 
Query:    4 VTTRLIKINFQGDSRDVTLPRPVTLVSLQGAVSSTFGADLLPRS--GKGAAEDDLCFTYKDPEGDDIVFDKEYELSLALRLCP-TLEISAVSKAER 282
            +TT  IKI FQG SRDV +  PV L SLQ A+++ F  +L  RS  G+ A + DL FTYKDP+GDDIVFDKE EL LALRLCP +LEISA  K  +
Sbjct:   19 MTTSSIKITFQGASRDVNVRVPVMLASLQAAIAAAFDVELPARSSAGEAANDTDLSFTYKDPDGDDIVFDKESELQLALRLCPGSLEISAAGKENK 114
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig70076.14663.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D8LN82_ECTSI6.860e-2861.54PB1 domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LN68_ECTSI9.050e-2761.17PB1 domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LN66_ECTSI7.340e-2659.22PB1 domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JQ17_9PHAE6.410e-2560.40PB1 domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KAY7_9PHAE1.040e-2459.38PB1 domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KB69_9PHAE2.360e-2357.28PB1 domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JPU3_9PHAE5.270e-2359.38PB1 domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig70076contigH-elongata_contig70076:1337..2847 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size322
Cds size321
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931099.1177223-CDS-H-elongata_contig70076:1336..13721622931099.1177223-CDS-H-elongata_contig70076:1336..1372Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70076 1337..1372 -
1691679697.5002253-CDS-H-elongata_contig70076:1336..13721691679697.5002253-CDS-H-elongata_contig70076:1336..1372Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70076 1337..1372 -
1622931099.1382887-CDS-H-elongata_contig70076:2562..28471622931099.1382887-CDS-H-elongata_contig70076:2562..2847Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70076 2563..2847 -
1691679697.508131-CDS-H-elongata_contig70076:2562..28471691679697.508131-CDS-H-elongata_contig70076:2562..2847Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70076 2563..2847 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig70076.14663.1prot_H-elongata_contig70076.14663.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig70076 1337..2847 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig70076.14663.1

>prot_H-elongata_contig70076.14663.1 ID=prot_H-elongata_contig70076.14663.1|Name=mRNA_H-elongata_contig70076.14663.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=107bp
MVTTRLIKINFQGDSRDVTLPRPVTLVSLQGAVSSTFGADLLPRSGKGAA
EDDLCFTYKDPEGDDIVFDKEYELSLALRLCPTLEISAVSKAERKKPSNV
PQDAHDP
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mRNA from alignment at H-elongata_contig70076:1337..2847-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig70076.14663.1 ID=mRNA_H-elongata_contig70076.14663.1|Name=mRNA_H-elongata_contig70076.14663.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1511bp|location=Sequence derived from alignment at H-elongata_contig70076:1337..2847- (Himanthalia elongata Himel1 dioecious)
ATGGTGACTACCCGCTTGATTAAGATAAACTTTCAAGGCGACTCACGCGA
CGTTACCTTGCCGAGGCCTGTGACCCTAGTAAGTCTTCAGGGAGCCGTTT
CTTCAACTTTCGGCGCTGATCTCCTGCCTCGCTCGGGAAAAGGTGCTGCC
GAAGATGACTTGTGTTTTACTTATAAGGATCCCGAGGGCGACGACATCGT
GTTCGATAAGGAATATGAACTGAGCCTAGCCCTGCGCCTCTGTCCCACGC
TCGAGATATCTGCTGTTTCCAAGGCCGAGCGTAAGGTCTGTAACACCTTT
TGACTAAAACCTACTGCTGTAGACTATCGTGTAATACCACTGTTACCACG
AGCGCTGATACTGTAACAGCCCGAAATTAATCGATCTATATGTCCTTTAC
TGACCTTATATACTCACGGATGATGATTTTGTACTCAAATGGTAAAATAT
ACACATTCGAATCTGACGATAGTTGATCCCCTGGATTGCACCCCTCACGG
CGCTAAGAAGGTGTGGTTGTTCGTAGGGTTGGAATGAGTTCAAGTTTTTT
TTAAAATAAAGAACTGTTTTGTACGACGTTATCTATTTGCTGCCCGCTGT
TAATTTTGTAACCCTGCAAGTTTCCCTCTCTGTTCTCCTTCCGGCCTGAG
ATTTCCCAAAAGGGAGCTAAAGAAACACATGCGCCATACTACCCACCCGA
ACTCGACAATGCGAGGTCACTAGGATTTTCGCCGAACAAAGCCGCCCATG
GCGTAACGAAGATGTGGATGTCCGTCCGGTTTGAATGCGTTAGTACTGTA
GTCCAGAGTTTTAAAATAATTACAACAAACCTATACGCTCTAGGCTCTAA
TAGCAATTCTCTGTTATGTCGTACAGCATGTCATTCTCTGTTCACGATGT
TCCTCACACCCCATCGACACACGGTACGATTACACGCCTTCTTGAGAGAA
TCAGTCAGGGTCAGCTGACACAAGTGCTGTGTAAGCGGGGTGTCTTTGCC
AACCGACGTCGCTGCTGCTAACCTATTGTACCTGTTTTTGCTCACCTTTT
CAAATAAGACTATATTTTTGTCAACCTTTCACTTGAGCGCTTTCTCCGAG
CGCCGAATGATATGATGATGGGATTATATTCACCAGATTCAGTCTGGGTT
GTAAAATAGGCTGATGTCAAAATCCAGCCTGTGGTCACAAGGTAGAAAAC
CCACCATTCGGGAGAGGGAGAGGGCTCTTTACCTACAAAAAGAAATCACC
TTGAGACCAGCACGGGGTGGAGGTGTACATCCCTGTAATTGCTTAGGCCG
GGTCTTACCGAAATACAAAAAATATTTTTTCCAGCCGATTTAAATATAGC
TGGAATTAAAACTTTTGTAACCCCGTTAATACAATACCCGCCCTAATACC
GGTATATAATAGTCGTTGCTGTTATGACACCTGTCCTCTGATGCACTGCT
CGTCTAGGTCATGACCTTCTTCCAGAAACCTTCGAACGTCCCTCAAGACG
CCCATGACCCG
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Coding sequence (CDS) from alignment at H-elongata_contig70076:1337..2847-

>mRNA_H-elongata_contig70076.14663.1 ID=mRNA_H-elongata_contig70076.14663.1|Name=mRNA_H-elongata_contig70076.14663.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=642bp|location=Sequence derived from alignment at H-elongata_contig70076:1337..2847- (Himanthalia elongata Himel1 dioecious)
ATGGTGACTACCCGCTTGATTAAGATAAACTTTCAAGGCGACTCACGCGA
CGTTACCTTGCCGAGGCCTGTGACCCTAGTAAGTCTTCAGGGAGCCGTTT
CTTCAACTTTCGGCGCTGATCTCCTGCCTCGCTCGGGAAAAGGTGCTGCC
GAAGATGACTTGTGTTTTACTTATAAGGATCCCGAGGGCGACGACATCGT
GTTCGATAAGGAATATGAACTGAGCCTAGCCCTGCGCCTCTGTCCCACGC
TCGAGATATCTGCTGTTTCCAAGGCCGAGCGTAAGATGGTGACTACCCGC
TTGATTAAGATAAACTTTCAAGGCGACTCACGCGACGTTACCTTGCCGAG
GCCTGTGACCCTAGTAAGTCTTCAGGGAGCCGTTTCTTCAACTTTCGGCG
CTGATCTCCTGCCTCGCTCGGGAAAAGGTGCTGCCGAAGATGACTTGTGT
TTTACTTATAAGGATCCCGAGGGCGACGACATCGTGTTCGATAAGGAATA
TGAACTGAGCCTAGCCCTGCGCCTCTGTCCCACGCTCGAGATATCTGCTG
TTTCCAAGGCCGAGCGTAAGAAACCTTCGAACGTCCCTCAAGACGCCCAT
GACCCGAAACCTTCGAACGTCCCTCAAGACGCCCATGACCCG
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