mRNA_H-elongata_contig118917.1466.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig118917.1466.1 vs. uniprot
Match: D7FXS1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FXS1_ECTSI) HSP 1 Score: 247 bits (630), Expect = 1.310e-68 Identity = 193/494 (39.07%), Postives = 233/494 (47.17%), Query Frame = 1
Query: 1 VDAERGTPLPEHACGKDGA--------LSLLRRVERCCIETNSAEIEKTIAMLSGRPSPDQPDD-----VAVTSAGAVEEDEKSGPRGFHEEGDFLRGVPPRVIEAASSACRAALLLCTGEYERLLRETPLFSAQPRSPPPASMCGASGAVDRASAGVQNMRACVLSFVVGGVGGTRAHAPSIVANRTRDYL-----------DSSTPCAGAEIEADADAASAVWRAAEVMWVGAAALSLFWQENYSGPELGPERLSSLNEFFAEKCALLGGGGCVSASEADSFS----------AQEAANVALSCDGELPYPKSSLTGSLLAARIILATLA-EGDYRRGS-GRKSEAFDHRSQLRSSWSESLLPPFPVKRVDNDDDGDDGCHGGDGTVSKKGISFRDAAGGLSTAAWWAARACVTHARLLLSSD-RSETLWREAVGLFALTVRAFGEGEALEGEAREEPLGVDLRARESLEYLKRRVAGRVWLEWGLAQHYFQ 1371
VDA RG PLPEHA A L LLRRVERCC+E+ AE+E +A LS D D A T+ +D+K+ R + +PP V AA ACRAAL LC GEYE LLRET LFSA G G +++ ACV +FVVG D C GA +AVWRAAE W GAAAL LF QENY+GPELG +R ++ + A+ GG AQ+ AN+AL+CDGELPYP+SSL GSL+ AR IL +A G RR + G + + WS F + G GG G SF++A G LS+A WW+ RACVTHARLL+SS RSETLWREA GLF V FG G P + RRV+G+VWLEWGLAQH+FQ
Sbjct: 98 VDAVRGAPLPEHAGEGPSAAAAAAAANLPLLRRVERCCLESRPAEVEAAVAALSSHVRGDASDGHSREGSAETADVCASKDDKAAAR------VCVEAMPPAVARAALDACRAALRLCRGEYEDLLRETALFSAD-------------GCTSDGGGGSRSIDACVRAFVVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGRRGCPGA---------AAVWRAAEAAWAGAAALCLFLQENYAGPELGADRTEAICAWCADVLVGTYGGXXXXXXXXXXXXXXXXXXXXXVAQDLANIALTCDGELPYPQSSLPGSLVLARTILMAVAGTGTGRRNTPGHTAPTAASPEREAPVWSPD---GFSFAVLPAAAGGSAVAAGGAGCGDSSEESFQEAVGSLSSAEWWSGRACVTHARLLISSSGRSETLWREARGLFGRAVSLFGGGAG--------PAVXXXXXXXXGAEVARRVSGQVWLEWGLAQHHFQ 552
BLAST of mRNA_H-elongata_contig118917.1466.1 vs. uniprot
Match: A0A7S2SGM7_9STRA (Hypothetical protein (Fragment) n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SGM7_9STRA) HSP 1 Score: 88.2 bits (217), Expect = 2.470e-15 Identity = 84/263 (31.94%), Postives = 114/263 (43.35%), Query Frame = 1
Query: 604 RAAEVMWVGAAALSLFWQENYSGPELGPERLSSLNEFFAEKCALLGGGGCVSASEADSFSAQEAANVALSCDGELPYPKSSLTGSLLAARIILATLAEGDYRRGSGRKSEAFDHRSQLRSSWSESLLPPFPVKR-VDNDDDGDDGCHGGDGTVS-------KKGISFRDAAGGLSTAAWWAARACVTHARLLLSSDRSETLWREAVGLFALTVRAFGEGEALEGEAREEPLGVDLRARESLEYLKRRVAGRVWLEWGLAQHYF 1368
RA V+ +G AAL+LF Q NY+GPE+G + L + D ++ A AL+ DGELPYP S LL AR++L LA D S L WS PVK V ++ G G G + + ++ L T AWW+ARA VTH+RLLL+ D + TLW E F TV ++ G L P ++ ++ E WLEWGLAQ++F
Sbjct: 185 RAIGVLGLGVAALNLFLQANYTGPEVGEDGLPPV----------------------DLLASPGATQAALAVDGELPYPHSIGPRFLLIARVLLGVLA---------------DPSSPL---WS------TPVKDWVGEEEIGGGGARVGATMAAPDPRPRRRCSLALLRVPKALPTGAWWSARAIVTHSRLLLAGDPTLTLWVETAAAFR-TVLSWACGSVL-------PTATPVKTHQAAE---------AWLEWGLAQYHF 384
BLAST of mRNA_H-elongata_contig118917.1466.1 vs. uniprot
Match: V9FQ59_PHYPR (Uncharacterized protein n=9 Tax=Phytophthora TaxID=4783 RepID=V9FQ59_PHYPR) HSP 1 Score: 72.8 bits (177), Expect = 6.920e-10 Identity = 83/293 (28.33%), Postives = 118/293 (40.27%), Query Frame = 1
Query: 493 AHAPSIVANRTRDYLDSSTPCAGAEIEADADAASAVWRAAEVMWVGAAALSLFWQENYSGPELGPERLSSLNEFFAEKCALLGGGGCVSASEADSFSAQEAANVALSCDGELPYPKSSLTGSLLAARIILATLAEGDYRRGSGRKSEAFDHRSQLRSSWSESLLPPFPVKRVDNDDDGDDGCHGGDGTVSKKGISFRDAAGGLSTAAWWAARACVTHARLLLSSDRSETLWREAVGLFALTVRAFGEGEALEGEAREEPLGVDLRARES-LEYLKRRVAGRVWLEWGLAQHYF 1368
+H S +A+ + YL C AE S + A E+++VG A ++ Q NY+GP E L + + + S+SE+ + A VAL DGE P+ LL R +L + Y S +E Q + S+ ++ P KR G + G F + +AAWW ARA V H RLLL+ S TLW EA + T++ DL A E +YL R ++EWGLAQHYF
Sbjct: 108 SHICSSIASELQSYL--LDQCDSAE--------SRLVTAYEILFVGVAFFDMYVQANYTGPAFEKETLRDVLDLATRLVS--------SSSESSDKKSHSDALVALQVDGESPFSICEYPQFLLVGRCLLDFVGNHAYNDWSVAANEVVS--GQNDNEVSDDVVEG-PAKRQIT----------GGAAIRALGEMFEQ----IKSAAWWNARAAVAHERLLLAKQPSNTLWFEARRGYIQTLKT-----------------TDLFAFEKDTQYLH----ARAYVEWGLAQHYF 344
BLAST of mRNA_H-elongata_contig118917.1466.1 vs. uniprot
Match: A0A024U874_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U874_9STRA) HSP 1 Score: 67.4 bits (163), Expect = 3.460e-8 Identity = 81/264 (30.68%), Postives = 116/264 (43.94%), Query Frame = 1
Query: 580 ADAASAVWRAAEVMWVGAAALSLFWQENYSGPELGPERLSSLNEFFAEKCALLGGGGCVSASEADSFSAQEAANVALSCDGELPYPKSSLTGSLLAARIILATLAEGDYRRGSGRKSEAFDHRSQLRSSWSESLLPPFPVKRVDNDDDGDDGCHGGDGTVSKKGISFRDAAGGLSTAAWWAARACVTHARLLLSSDRSETLWREAVGLFALTVRAFGEGEALEGEAREEPLGVDLRARESLEYLKRRVAGRVWLEWGLAQHYFQ 1371
AD ++ + A V++ GAA L++F Q NY+GP + L+ L A LL S++E + A V+L DGE P+ L AAR +L + G + + SEA DH ++ ++ + L P + HG +S + S GLST AWW R+ +TH RLL++ + S TLW EA F++ V AR P L AR LEWGLAQH F+
Sbjct: 118 ADPSNMLSMAYTVLYSGAALLNMFVQLNYTGPAMEDSALADLLPMLA---VLLDN----SSTEVTKDTLNCHALVSLQVDGESPFSICEYPVFLEAARCLLHFV--GLQSKVNWSHSEAEDHITKP-TTLTNYLRRPRTL-------------HGMAQPLSPQVTSVLL---GLSTGAWWTGRSLMTHQRLLITKEPSNTLWTEAQYCFSVAV------------ARTYPSDTYLSAR-------------AHLEWGLAQHVFE 330
BLAST of mRNA_H-elongata_contig118917.1466.1 vs. uniprot
Match: A0A6G0X1Y6_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X1Y6_9STRA) HSP 1 Score: 63.5 bits (153), Expect = 5.650e-7 Identity = 76/252 (30.16%), Postives = 101/252 (40.08%), Query Frame = 1
Query: 616 VMWVGAAALSLFWQENYSGPELGPERLSSLNEFFAEKCALLGGGGCVSASEADSFSAQEAANVALSCDGELPYPKSSLTGSLLAARIILATLAEGDYRRGSGRKSEAFDHRSQLRSSWSESLLPPFPVKRVDNDDDGDDGCHGGDGTVSKKGISFRDAAGGLSTAAWWAARACVTHARLLLSSDRSETLWREAVGLFALTVRAFGEGEALEGEAREEPLGVDLRARESLEYLKRRVAGRVWLEWGLAQHYFQ 1371
V++ GAA L+LF Q NY+GP + S+L + LL V A+ + A V+L DGE P+ L R +L + + S SE D+ ++ SE + P RV N G LSTA WW RA +TH RLL++ + S TLW E F+ V GE A EYL A R LEWGLAQH+F+
Sbjct: 149 VLYAGAAFLNLFVQLNYTGPAMED---SALEDLLPLVSVLLSDDSQV----ANKANLHRHAIVSLQVDGETPFSICEYPIFLEMGRCLLHFVGLQSHINWS--HSEPVDNITKF-IPLSEYIRQP----RVLN------------GIAQPISTQITQVVRTLSTATWWTGRALMTHQRLLITKEPSNTLWTETRYCFSFVV---GESYAS-------------------EYL----AARAHLEWGLAQHFFE 348
BLAST of mRNA_H-elongata_contig118917.1466.1 vs. uniprot
Match: A0A7S4RFX4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RFX4_9STRA) HSP 1 Score: 60.1 bits (144), Expect = 6.370e-6 Identity = 76/269 (28.25%), Postives = 107/269 (39.78%), Query Frame = 1
Query: 613 EVMWVGAAALSLFWQENYSGPELG--------PERLSSLNEFFAEKCALLGGGGCVSASEAD-SFSAQEAANV-------ALSCDGELPYPKSSLTGSLLAARIILATLAEGDYRRGSGRKSEAFDHRSQLRSSWSESLLPPFPVKRVDNDDDGDDGCHGGDGTVSKKGISFRDAAGGLSTAAWWAARACVTHARLLLSSDRSETLWREAVGLFALTVRAFGEG-EALEGEAREEPLGVDLRARESLEYLKRRVAGRVWLEWGLAQHYF 1368
EV +G AAL+LF Q NY+GP L PE L LL E + S ++ N+ L+ DGE P LL +R I +L++ + R S H S S + L ++ + SF A L+ A W+ARA V H RLL + S TLW EA +FA + F EA++ + + + +Y K+ +A RV LEWGLAQ +F
Sbjct: 142 EVEMLGVAALNLFLQLNYTGPNLDMGTKVATDPEAADPLRGVNPHPVFLLSKNKNNGTDEKENSTTSTPKKNLFHNKVLSELAVDGEWPCQVCHAPYMLLLSRSIFISLSDPE-RPDWTTHSALIPHSSNKDSKYGAKALMQKNEPT----------------SIPQYSASFIAATKQLTAADIWSARAVVAHQRLLQGDEPSLTLWNEAQSVFARCIETFCTNVEAIDSDDDSTAI------TKMTKYKKQAMASRVMLEWGLAQTHF 387
BLAST of mRNA_H-elongata_contig118917.1466.1 vs. uniprot
Match: A0A7S2EMJ5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2EMJ5_9STRA) HSP 1 Score: 59.7 bits (143), Expect = 9.120e-6 Identity = 78/271 (28.78%), Postives = 107/271 (39.48%), Query Frame = 1
Query: 613 EVMWVGAAALSLFWQENYSGPELG--------PERLSSLNEFFAEKCALLGGGGCVSASEAD-SFSAQEAANV-------ALSCDGELPYPKSSLTGSLLAARIILATLAEGDYRRGSGRKSEAFDHRSQLRSSWS-ESLLPPFPVKRVDNDDDGDDGCHGGDGT-VSKKGISFRDAAGGLSTAAWWAARACVTHARLLLSSDRSETLWREAVGLFALTVRAFGEG-EALEGEAREEPLGVDLRARESLEYLKRRVAGRVWLEWGLAQHYF 1368
EV +G AAL LF Q NY+GP L PE L LL E + S ++ N+ L+ DGE P LL +R I +L++ + R W+ S L P D+ D T + + SF A L A W+ARA V H RLL + S TLW EA +FA + F EA++ + + + +Y K+ +A RV LEWGLAQ +F
Sbjct: 149 EVEMLGVAALDLFLQLNYTGPNLDMGTKVATDPEAADPLRGVNPHPVFLLSKNKNNGTDEKENSTTSTPKKNLFHNKVLSELAVDGEWPCQVCHAPYMLLLSRSIFISLSDPE------------------RPDWTTHSALIPHKKSGKDSKYGAKALMQKNDSTSIPQYSASFIAATKQLKAADIWSARAVVAHQRLLQGDEPSLTLWNEAQSVFARCIETFCTNVEAIDSDDDSTAI------TKMTKYKKQAMASRVMLEWGLAQTHF 395
BLAST of mRNA_H-elongata_contig118917.1466.1 vs. uniprot
Match: W4GVW3_9STRA (Uncharacterized protein (Fragment) n=10 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GVW3_9STRA) HSP 1 Score: 58.9 bits (141), Expect = 1.580e-5 Identity = 73/252 (28.97%), Postives = 101/252 (40.08%), Query Frame = 1
Query: 616 VMWVGAAALSLFWQENYSGPELGPERLSSLNEFFAEKCALLGGGGCVSASEADSFSAQEAANVALSCDGELPYPKSSLTGSLLAARIILATLAEGDYRRGSGRKSEAFDHRSQLRSSWSESLLPPFPVKRVDNDDDGDDGCHGGDGTVSKKGISFRDAAGGLSTAAWWAARACVTHARLLLSSDRSETLWREAVGLFALTVRAFGEGEALEGEAREEPLGVDLRARESLEYLKRRVAGRVWLEWGLAQHYFQ 1371
V++ GAA L+LF Q NY+GP + L+ L LL S EA + A V+L DGE P+ L AR +L + G + + SE+ DH ++ + + L P V G A LST AWW R+ +TH RLL++ + S TLW E F++ V R+ S YL + R LEWGLAQH F+
Sbjct: 132 VLFAGAAFLNLFVQLNYTGPAMEDAALADLLPMLH---VLLDD----STVEATKSTLHSHALVSLQVDGESPFSICEYPVFLETARCLLHFV--GLQSKVNWTHSESDDHITKP-TPLANFLRRPRTVH----------------GMARPLNPQVTAALLALSTGAWWTGRSLMTHQRLLITKEPSNTLWTETQLCFSVVVG---------------------RSYPSDTYL----SARAKLEWGLAQHVFE 332
BLAST of mRNA_H-elongata_contig118917.1466.1 vs. uniprot
Match: A0A6A5B2A0_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5B2A0_9STRA) HSP 1 Score: 55.8 bits (133), Expect = 6.050e-5 Identity = 71/252 (28.17%), Postives = 99/252 (39.29%), Query Frame = 1
Query: 616 VMWVGAAALSLFWQENYSGPELGPERLSSLNEFFAEKCALLGGGGCVSASEADSFSAQEAANVALSCDGELPYPKSSLTGSLLAARIILATLAEGDYRRGSGRKSEAFDHRSQLRSSWSESLLPPFPVKRVDNDDDGDDGCHGGDGTVSKKGISFRDAAGGLSTAAWWAARACVTHARLLLSSDRSETLWREAVGLFALTVRAFGEGEALEGEAREEPLGVDLRARESLEYLKRRVAGRVWLEWGLAQHYFQ 1371
V++ GAA L+LF Q NY+GP + + L LL S EA + A V+L DGE P+ L AR +L + G + + S+ DH ++ + + L P V G A LST AWW R+ +TH RLL++ + S TLW E F++ V R+ S YL + R LEWGLAQH F+
Sbjct: 102 VLFAGAAFLNLFVQLNYTGPAMEDAAFADLLPMLH---VLLDD----STVEATKSTLHSHALVSLQVDGESPFSICEYPVFLETARCLLHFV--GLQSKVNWTHSDPDDHITKP-TPLANFLRRPRTVH----------------GMARPLNPQVTAALLALSTGAWWTGRSLMTHQRLLITKEPSNTLWTETQLCFSVVVG---------------------RSYPSDTYL----SARAQLEWGLAQHVFE 302 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig118917.1466.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig118917.1466.1 >prot_H-elongata_contig118917.1466.1 ID=prot_H-elongata_contig118917.1466.1|Name=mRNA_H-elongata_contig118917.1466.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=457bp VDAERGTPLPEHACGKDGALSLLRRVERCCIETNSAEIEKTIAMLSGRPSback to top mRNA from alignment at H-elongata_contig118917:191..1702+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig118917.1466.1 ID=mRNA_H-elongata_contig118917.1466.1|Name=mRNA_H-elongata_contig118917.1466.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1512bp|location=Sequence derived from alignment at H-elongata_contig118917:191..1702+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig118917:191..1702+ >mRNA_H-elongata_contig118917.1466.1 ID=mRNA_H-elongata_contig118917.1466.1|Name=mRNA_H-elongata_contig118917.1466.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2742bp|location=Sequence derived from alignment at H-elongata_contig118917:191..1702+ (Himanthalia elongata Himel1 dioecious)back to top |