mRNA_H-elongata_contig70036.14660.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig70036.14660.1
Unique NamemRNA_H-elongata_contig70036.14660.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig70036.14660.1 vs. uniprot
Match: D8LEK3_ECTSI (Pyruvate dehydrogenase (acetyl-transferring) n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEK3_ECTSI)

HSP 1 Score: 174 bits (440), Expect = 1.030e-48
Identity = 87/93 (93.55%), Postives = 88/93 (94.62%), Query Frame = 1 
Query:    1 GGWALVAEQIPYAAGAARSILMDRHLDPEGLKDDDRLTIVFLGEGAAQNGRMAENLNAAAKEKLPLLFLVIDNGRAINTFTPDVATNSDVFTQ 279
            GGWALVAEQI YAAGAARSILMDR LDPEG+KDDDRLTIVFLGEGAAQNGRMAE LNAAAKEKLPLLFLVIDNGRAINTFTPDVA NSDVF Q
Sbjct:  211 GGWALVAEQIAYAAGAARSILMDRQLDPEGMKDDDRLTIVFLGEGAAQNGRMAETLNAAAKEKLPLLFLVIDNGRAINTFTPDVAANSDVFAQ 303
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BLAST of mRNA_H-elongata_contig70036.14660.1 vs. uniprot
Match: A0A836C8J1_9STRA (Pyruvate dehydrogenase (acetyl-transferring) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8J1_9STRA)

HSP 1 Score: 162 bits (409), Expect = 1.470e-44
Identity = 77/93 (82.80%), Postives = 86/93 (92.47%), Query Frame = 1 
Query:    1 GGWALVAEQIPYAAGAARSILMDRHLDPEGLKDDDRLTIVFLGEGAAQNGRMAENLNAAAKEKLPLLFLVIDNGRAINTFTPDVATNSDVFTQ 279
            GGWALVAEQ+PYA GAARSIL+DRHLDP G ++DDR+TIVF+GEG AQNGRMAE LNAAAKEKLP++FLVIDNGRAINTFTPDVA NSDV+ Q
Sbjct:  139 GGWALVAEQLPYAVGAARSILLDRHLDPAGTRNDDRVTIVFVGEGGAQNGRMAECLNAAAKEKLPIIFLVIDNGRAINTFTPDVAANSDVYLQ 231
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BLAST of mRNA_H-elongata_contig70036.14660.1 vs. uniprot
Match: A0A482SZZ3_9ARCH (Pyruvate dehydrogenase (acetyl-transferring) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SZZ3_9ARCH)

HSP 1 Score: 160 bits (406), Expect = 4.420e-44
Identity = 77/93 (82.80%), Postives = 85/93 (91.40%), Query Frame = 1 
Query:    1 GGWALVAEQIPYAAGAARSILMDRHLDPEGLKDDDRLTIVFLGEGAAQNGRMAENLNAAAKEKLPLLFLVIDNGRAINTFTPDVATNSDVFTQ 279
            GGWALV+EQ+PYA GAARSIL+DRHLDP G +DDDR+TIVF+GEG AQNGRMAE LNAAAKE LPLLF+VIDNGRAINTFTPDVA NSDV+ Q
Sbjct:  164 GGWALVSEQLPYAVGAARSILLDRHLDPAGQRDDDRITIVFVGEGGAQNGRMAECLNAAAKENLPLLFVVIDNGRAINTFTPDVAQNSDVYLQ 256
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BLAST of mRNA_H-elongata_contig70036.14660.1 vs. uniprot
Match: R1B9S2_EMIHU (Pyruvate dehydrogenase (acetyl-transferring) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1B9S2_EMIHU)

HSP 1 Score: 160 bits (404), Expect = 9.750e-44
Identity = 76/93 (81.72%), Postives = 84/93 (90.32%), Query Frame = 1 
Query:    1 GGWALVAEQIPYAAGAARSILMDRHLDPEGLKDDDRLTIVFLGEGAAQNGRMAENLNAAAKEKLPLLFLVIDNGRAINTFTPDVATNSDVFTQ 279
            GGWALV EQ+PYAAGAARSIL+DR LDP+G KDDDR+ +VF+GEG AQNGRMAE LNAAAKE LPLLF+VIDNGRAINTFTPDVA N+DVF Q
Sbjct:  208 GGWALVCEQLPYAAGAARSILLDRQLDPDGTKDDDRIAVVFVGEGGAQNGRMAECLNAAAKENLPLLFIVIDNGRAINTFTPDVAANNDVFEQ 300
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BLAST of mRNA_H-elongata_contig70036.14660.1 vs. uniprot
Match: W7TYT3_9STRA (Pyruvate dehydrogenase (acetyl-transferring) n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TYT3_9STRA)

HSP 1 Score: 158 bits (400), Expect = 3.730e-43
Identity = 77/91 (84.62%), Postives = 83/91 (91.21%), Query Frame = 1 
Query:    1 GGWALVAEQIPYAAGAARSILMDRHLDPEGLKDDDRLTIVFLGEGAAQNGRMAENLNAAAKEKLPLLFLVIDNGRAINTFTPDVATNSDVF 273
            GGWALV+EQ+PYA GAARSIL+DR LD EG KDDDR+TIVF+GEG AQNGRMAE LNAAAKE LP+LFLVIDNGRAINTFTPDVA NSDVF
Sbjct:  227 GGWALVSEQLPYAVGAARSILLDRELDTEGKKDDDRITIVFIGEGGAQNGRMAECLNAAAKEGLPILFLVIDNGRAINTFTPDVAANSDVF 317
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BLAST of mRNA_H-elongata_contig70036.14660.1 vs. uniprot
Match: A0A0M0JRY3_9EUKA (Pyruvate dehydrogenase (acetyl-transferring) n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JRY3_9EUKA)

HSP 1 Score: 154 bits (388), Expect = 1.610e-41
Identity = 72/93 (77.42%), Postives = 83/93 (89.25%), Query Frame = 1 
Query:    1 GGWALVAEQIPYAAGAARSILMDRHLDPEGLKDDDRLTIVFLGEGAAQNGRMAENLNAAAKEKLPLLFLVIDNGRAINTFTPDVATNSDVFTQ 279
            GGWALV+EQ+PYAAGAARSIL+DRHL+PE  K DDR+++VF+GEG AQNGRMAE LNAAAKE LP+LFL+IDNGRAINTFT DVA N D+F Q
Sbjct:  225 GGWALVSEQLPYAAGAARSILLDRHLEPEKFKGDDRISVVFIGEGGAQNGRMAECLNAAAKENLPMLFLIIDNGRAINTFTEDVAANMDIFKQ 317
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BLAST of mRNA_H-elongata_contig70036.14660.1 vs. uniprot
Match: A0A7S0VUT6_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0VUT6_9CRYP)

HSP 1 Score: 148 bits (373), Expect = 1.100e-40
Identity = 72/91 (79.12%), Postives = 81/91 (89.01%), Query Frame = 1 
Query:    1 GGWALVAEQIPYAAGAARSILMDRHLDPEGLKDDDRLTIVFLGEGAAQNGRMAENLNAAAKEKLPLLFLVIDNGRAINTFTPDVATNSDVF 273
            GGWALV+EQ+ YA GAARSILMDR   PE  KDD R+T+VF+GEG AQNGRMAE LNAAAKEKLP+LFLVIDNGRAINTFTPDVATN+D++
Sbjct:  245 GGWALVSEQLAYATGAARSILMDRLNYPEQYKDDKRMTVVFVGEGGAQNGRMAECLNAAAKEKLPILFLVIDNGRAINTFTPDVATNNDIY 335
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BLAST of mRNA_H-elongata_contig70036.14660.1 vs. uniprot
Match: L1J1I5_GUITC (Pyruvate dehydrogenase (acetyl-transferring) n=2 Tax=Guillardia theta TaxID=55529 RepID=L1J1I5_GUITC)

HSP 1 Score: 150 bits (380), Expect = 1.680e-40
Identity = 74/93 (79.57%), Postives = 82/93 (88.17%), Query Frame = 1 
Query:    1 GGWALVAEQIPYAAGAARSILMDRHLDPEGLKDDDRLTIVFLGEGAAQNGRMAENLNAAAKEKLPLLFLVIDNGRAINTFTPDVATNSDVFTQ 279
            GGWALV+EQ+PYAAGAARSIL+DR L PE  KDDDR+++VF+GEG AQNGRMAE LNAAAKE LPLLF+VIDNGRAINTFT DVA N DVF Q
Sbjct:  157 GGWALVSEQLPYAAGAARSILLDRMLHPEQHKDDDRISVVFIGEGGAQNGRMAECLNAAAKENLPLLFIVIDNGRAINTFTGDVAKNQDVFLQ 249
[Close]
BLAST of mRNA_H-elongata_contig70036.14660.1 vs. uniprot
Match: A0A7S4M2W8_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4M2W8_9EUKA)

HSP 1 Score: 142 bits (358), Expect = 5.660e-40
Identity = 73/95 (76.84%), Postives = 80/95 (84.21%), Query Frame = 1 
Query:    1 GGWALVAEQIPYAAGAARSILMDRHLD--PEGLKDDDRLTIVFLGEGAAQNGRMAENLNAAAKEKLPLLFLVIDNGRAINTFTPDVATNSDVFTQ 279
            GGWALV+EQ+PYA GAARSIL+DRHL   PEG   DDR+ IVF GEG +QNGRMAE LNAAAKE LP+LF+ IDNGRAINTFTPDVA NSDVF Q
Sbjct:  141 GGWALVSEQLPYAVGAARSILLDRHLGIAPEG---DDRMAIVFCGEGGSQNGRMAECLNAAAKESLPILFVCIDNGRAINTFTPDVAQNSDVFLQ 232
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BLAST of mRNA_H-elongata_contig70036.14660.1 vs. uniprot
Match: A0A8J6CFX7_DIALT (Pyruvate dehydrogenase (acetyl-transferring) n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6CFX7_DIALT)

HSP 1 Score: 147 bits (372), Expect = 2.360e-39
Identity = 74/93 (79.57%), Postives = 81/93 (87.10%), Query Frame = 1 
Query:    1 GGWALVAEQIPYAAGAARSILMDRHLDPEGLKDDDRLTIVFLGEGAAQNGRMAENLNAAAKEKLPLLFLVIDNGRAINTFTPDVATNSDVFTQ 279
            GGWALVAEQ+PYA G ARSIL+DR L   G KDDDR+ IVF+GEG AQNGRMAE LNAAAKE LP+LF+VIDNGRAINTFTPDVA NS+VFTQ
Sbjct:  201 GGWALVAEQLPYAVGGARSILLDRQLGKVG-KDDDRIAIVFVGEGGAQNGRMAECLNAAAKENLPILFVVIDNGRAINTFTPDVAQNSEVFTQ 292
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig70036.14660.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEK3_ECTSI1.030e-4893.55Pyruvate dehydrogenase (acetyl-transferring) n=2 T... [more]
A0A836C8J1_9STRA1.470e-4482.80Pyruvate dehydrogenase (acetyl-transferring) n=1 T... [more]
A0A482SZZ3_9ARCH4.420e-4482.80Pyruvate dehydrogenase (acetyl-transferring) n=1 T... [more]
R1B9S2_EMIHU9.750e-4481.72Pyruvate dehydrogenase (acetyl-transferring) n=1 T... [more]
W7TYT3_9STRA3.730e-4384.62Pyruvate dehydrogenase (acetyl-transferring) n=2 T... [more]
A0A0M0JRY3_9EUKA1.610e-4177.42Pyruvate dehydrogenase (acetyl-transferring) n=1 T... [more]
A0A7S0VUT6_9CRYP1.100e-4079.12Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
L1J1I5_GUITC1.680e-4079.57Pyruvate dehydrogenase (acetyl-transferring) n=2 T... [more]
A0A7S4M2W8_9EUKA5.660e-4076.84Hypothetical protein (Fragment) n=1 Tax=Prymnesium... [more]
A0A8J6CFX7_DIALT2.360e-3979.57Pyruvate dehydrogenase (acetyl-transferring) n=2 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig70036contigH-elongata_contig70036:970..2771 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score173.7
Seed ortholog evalue4e-41
Seed eggNOG ortholog2880.D8LEK3
Preferred nameodpA
KEGG rclassRC00004,RC00027,RC00627,RC02742,RC02744,RC02882
KEGG koko:K00161
KEGG ReactionR00014,R00209,R01699,R03270
KEGG Pathwayko00010,ko00020,ko00620,ko01100,ko01110,ko01120,ko01130,ko01200,ko04066,ko04922,ko05230,map00010,map00020,map00620,map01100,map01110,map01120,map01130,map01200,map04066,map04922,map05230
KEGG ModuleM00307
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009941,GO:0031967,GO:0031975,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464
EggNOG free text desc.pyruvate dehydrogenase (acetyl-transferring) activity
EggNOG OGsCOG0022@1,COG0462@1,KOG0225@2759,KOG0524@2759
EC1.2.4.1
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01601,ko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Exons2
Model size279
Cds size279
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931098.8838894-CDS-H-elongata_contig70036:969..10761622931098.8838894-CDS-H-elongata_contig70036:969..1076Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70036 970..1076 +
1691679697.3894343-CDS-H-elongata_contig70036:969..10761691679697.3894343-CDS-H-elongata_contig70036:969..1076Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70036 970..1076 +
1622931098.9004586-CDS-H-elongata_contig70036:2599..27711622931098.9004586-CDS-H-elongata_contig70036:2599..2771Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70036 2600..2771 +
1691679697.4052103-CDS-H-elongata_contig70036:2599..27711691679697.4052103-CDS-H-elongata_contig70036:2599..2771Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70036 2600..2771 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig70036.14660.1prot_H-elongata_contig70036.14660.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig70036 970..2771 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig70036.14660.1

>prot_H-elongata_contig70036.14660.1 ID=prot_H-elongata_contig70036.14660.1|Name=mRNA_H-elongata_contig70036.14660.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=93bp
GGWALVAEQIPYAAGAARSILMDRHLDPEGLKDDDRLTIVFLGEGAAQNG
RMAENLNAAAKEKLPLLFLVIDNGRAINTFTPDVATNSDVFTQ
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mRNA from alignment at H-elongata_contig70036:970..2771+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig70036.14660.1 ID=mRNA_H-elongata_contig70036.14660.1|Name=mRNA_H-elongata_contig70036.14660.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1802bp|location=Sequence derived from alignment at H-elongata_contig70036:970..2771+ (Himanthalia elongata Himel1 dioecious)
GGAGGTTGGGCCTTGGTGGCGGAGCAGATCCCCTACGCGGCCGGGGCGGC
GCGGTCCATCCTCATGGACAGACACCTGGACCCAGAAGGACTCAAGGACG
ACGACAGGTACTAATATTATTAGTACAGTGCTCTAGCAAAGCTGAGTTGA
ACATTGCCACAGCATTTTTATTTTTTTTTGTATTGGAGAGTACCTTGAAC
GTTTTTCTCCTTTCCGGATGGTGTATTATTTCTACCTTGTGGCCACGGGC
TGGACTTTTGACATCAGCTTATGTGAGAATTCAATCAAATCAATCAATCA
ATCATAGAAGATGATAAGTGTAGTGTGGCATAGTATAGAAAATGACAAAT
GTAGTGTAGCATAGTGTACTGCTTCGTGCGGTTTATGGGGTAGTGGTCGT
AGAAGTAGCGCGGCGTGGAGTGACGTAGACTCTACGCCATACTGCATCTT
GGTTTGGAGGCAATGACGTCACTCCACGCTACACGGGGAAAGTGCCGTCG
TTACTATTAGCAAACTAAAATTGGGAGCGGGGGGGGCGGAGGGGGACCCC
TGGCCCTCGTATAGCTCAGTATAGCTTTTGGTTGTGTCCCAGTACGTAAT
AGATTCTCCATGCGAAGAACCTGGAAACACATAAGGACAGCGGTATTTAC
GATATGTACACCAGCGAGGGAAATGTTTTTGTGTTTTATAAAAAGAGTGC
GATGTGCGTTTCTCTTGTACCGTTGCCGTTACCGTTTATATAAATTTCTA
TAGCTTTTTACCGCAGCTCCCGCCTCCCAGGGATCCTGCTGATTTATGCT
TGTGCGCGCTTGTGGTTCGAGAGAGGGCGCAAGCTCCGCGAGGCCATCGT
CGCGCGAGTCCTAAACAAGATCCAGTCGGTTGTCGTTTGTTTTGTTTTGT
TTTGTTTTTGCGGGTGGAAGGAGAGTATGGGCAAATCAGCAACAAATGCA
AAAGACAAAAAAAACAACGAGAGTTAGCTTGAGAAAAAGAAAAAGAAGAA
AAAAAAAAAAAAAAAAAAAAAAAAAAACGAACCCCCCCCCTCTGGACAGC
CCCCCCCGTATCCCCCCAGAGGCTGTCCTATTAAAACACCCNNNNNNNNN
NAAAAAGAAAAAAAAAAAAAAAAAAAAAAAATAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAGAGACGTACGAAACTACTGCATCTGGAC
GGACGGCTGTGGATCCCCTCCGAGATACGCCAATAAACGCGACTGCTCCG
TTTTCAAGTGTACCTCGACCGTGTTGGTACAGAACAGGTTCTCCTTAAAC
AGCCCTCCGTTGGCACGGGCACCCTTCCCCTTTGGCTCTGGTGCTCTTTC
CTTGGCATAAACGCGATGGGATGCTCGAGATATAAGGCGGGCGCGCAATT
CCACACCATTCAGCTGTTTGGTTTCCTTATTGTGCTTGCCGCCAACCGTT
CCCCAGAATATTTTCAGGAGATATTGCATGGTTCGCTCCGCAGATCGTTC
CATGGGTTGTTTTCTGCCTGTTGTAACTCGGGCCGGATCTCAAACGCACA
GTCCCGCGGATCGTTCCGTGGATCGTTCCGTGGATCGTTCCGCAACGCGC
GAACCGCCTCCCACGCCACTTGCGACTCAGGCTGACGATCGTGTTCCTCG
GAGAGGGAGCGGCTCAGAACGGGCGCATGGCGGAGAACCTCAACGCCGCG
GCAAAGGAAAAACTCCCGCTGCTGTTCCTCGTGATCGACAACGGCCGCGC
CATCAACACCTTCACGCCCGACGTCGCGACGAACTCTGACGTGTTCACGC
AG
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Coding sequence (CDS) from alignment at H-elongata_contig70036:970..2771+

>mRNA_H-elongata_contig70036.14660.1 ID=mRNA_H-elongata_contig70036.14660.1|Name=mRNA_H-elongata_contig70036.14660.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=558bp|location=Sequence derived from alignment at H-elongata_contig70036:970..2771+ (Himanthalia elongata Himel1 dioecious)
GGAGGTTGGGCCTTGGTGGCGGAGCAGATCCCCTACGCGGCCGGGGCGGC
GCGGTCCATCCTCATGGACAGACACCTGGACCCAGAAGGACTCAAGGACG
ACGACAGGGAGGTTGGGCCTTGGTGGCGGAGCAGATCCCCTACGCGGCCG
GGGCGGCGCGGTCCATCCTCATGGACAGACACCTGGACCCAGAAGGACTC
AAGGACGACGACAGGCTGACGATCGTGTTCCTCGGAGAGGGAGCGGCTCA
GAACGGGCGCATGGCGGAGAACCTCAACGCCGCGGCAAAGGAAAAACTCC
CGCTGCTGTTCCTCGTGATCGACAACGGCCGCGCCATCAACACCTTCACG
CCCGACGTCGCGACGAACTCTGACGTGTTCACGCAGGCTGACGATCGTGT
TCCTCGGAGAGGGAGCGGCTCAGAACGGGCGCATGGCGGAGAACCTCAAC
GCCGCGGCAAAGGAAAAACTCCCGCTGCTGTTCCTCGTGATCGACAACGG
CCGCGCCATCAACACCTTCACGCCCGACGTCGCGACGAACTCTGACGTGT
TCACGCAG
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