mRNA_H-elongata_contig7003.14658.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig7003.14658.1 vs. uniprot
Match: D8LQ20_ECTSI (Proteasome subunit alpha type n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ20_ECTSI) HSP 1 Score: 133 bits (335), Expect = 3.740e-37 Identity = 67/80 (83.75%), Postives = 76/80 (95.00%), Query Frame = 1
Query: 1 AGKSLLKSDYEEDASVEACLKLAVKVLNKTMDSTTPTPEKMEFTTITRVNGKIVHKILPDEETDKILKEVAAEVSSQGDV 240
AGK+LLK+DY E++SV+ CLKLAVKVLNKTMDSTTP+PEKMEFTTITRVNGKIVHKIL DEE+DKILKEVAAE ++QGDV
Sbjct: 170 AGKALLKTDYVEESSVDECLKLAVKVLNKTMDSTTPSPEKMEFTTITRVNGKIVHKILTDEESDKILKEVAAETATQGDV 249
BLAST of mRNA_H-elongata_contig7003.14658.1 vs. uniprot
Match: A0A6V1N066_HETAK (Proteasome subunit alpha type n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1N066_HETAK) HSP 1 Score: 116 bits (290), Expect = 2.150e-30 Identity = 57/80 (71.25%), Postives = 71/80 (88.75%), Query Frame = 1
Query: 1 AGKSLLKSDYEEDASVEACLKLAVKVLNKTMDSTTPTPEKMEFTTITRVNGKIVHKILPDEETDKILKEVAAEVSSQGDV 240
AGKSLLK++YE+D++VE CLKLA KVLNKTMD+TTP+PEKMEF T+ V+GK+VHKIL D ET KIL+EV AEVS++GD+
Sbjct: 170 AGKSLLKNEYEQDSTVEQCLKLAAKVLNKTMDTTTPSPEKMEFFTLQMVDGKVVHKILTDAETAKILEEVQAEVSTEGDM 249
BLAST of mRNA_H-elongata_contig7003.14658.1 vs. uniprot
Match: M4C226_HYAAE (Proteasome subunit beta n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4C226_HYAAE) HSP 1 Score: 96.3 bits (238), Expect = 1.030e-22 Identity = 48/81 (59.26%), Postives = 66/81 (81.48%), Query Frame = 1
Query: 1 AGKSLLKSDYEEDASVEACLKLAVKVLNKTMDSTTPTPEKMEFTTITR-VNGKIVHKILPDEETDKILKEVAAEVSSQGDV 240
A KS+LKSDYE+D +VE L +VKV+NKTMDSTTPT EK+EFTT+TR +GKIVH+ L ++ET+ +L+E AA+ ++ GD+
Sbjct: 160 AAKSMLKSDYEKDMTVEEALVFSVKVMNKTMDSTTPTAEKVEFTTVTRNADGKIVHRQLTEKETEALLQEAAADTAASGDM 240
BLAST of mRNA_H-elongata_contig7003.14658.1 vs. uniprot
Match: A0A662WSN1_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WSN1_9STRA) HSP 1 Score: 95.5 bits (236), Expect = 1.340e-22 Identity = 49/81 (60.49%), Postives = 64/81 (79.01%), Query Frame = 1
Query: 1 AGKSLLKSDYEEDASVEACLKLAVKVLNKTMDSTTPTPEKMEFTTITR-VNGKIVHKILPDEETDKILKEVAAEVSSQGDV 240
A KSLLKSDYEE+ +VE L +VKV+ KTMDSTTP+ EK+EFTT+TR +GKIVH+ L ++ETD +LK AA+ +S GD+
Sbjct: 140 AAKSLLKSDYEENMTVEEALAFSVKVMGKTMDSTTPSAEKLEFTTVTRNADGKIVHRQLTEKETDALLKAAAADTASSGDM 220
BLAST of mRNA_H-elongata_contig7003.14658.1 vs. uniprot
Match: A0A836CL31_9STRA (Proteasome subunit alpha type n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CL31_9STRA) HSP 1 Score: 94.7 bits (234), Expect = 4.910e-22 Identity = 48/80 (60.00%), Postives = 63/80 (78.75%), Query Frame = 1
Query: 1 AGKSLLKSDYEEDASVEACLKLAVKVLNKTMDSTTPTPEKMEFTTITRVNGKIVHKILPDEETDKILKEVAAEVSSQGDV 240
AGKSLLK+DY E+ S+E L+LAVKVL KTMDST P+ +KME TTI RVN K+V+K+L D E ++LK V ++ S++GDV
Sbjct: 171 AGKSLLKNDYAENMSMEDALQLAVKVLTKTMDSTAPSADKMELTTIQRVNDKVVYKVLDDAEVTRVLKLVESQKSTEGDV 250
BLAST of mRNA_H-elongata_contig7003.14658.1 vs. uniprot
Match: A0A024URF4_9STRA (Proteasome subunit alpha type n=10 Tax=Saprolegniaceae TaxID=4764 RepID=A0A024URF4_9STRA) HSP 1 Score: 90.5 bits (223), Expect = 2.080e-20 Identity = 45/81 (55.56%), Postives = 62/81 (76.54%), Query Frame = 1
Query: 1 AGKSLLKSDYEEDASVEACLKLAVKVLNKTMDSTTPTPEKMEFTTITR-VNGKIVHKILPDEETDKILKEVAAEVSSQGDV 240
A K+LLKSDY+E +VE LK +VKV+ KTMD+TTPT EK+EF+T+TR GK+VH++L ETD +LK+V A+ + GD+
Sbjct: 170 AAKNLLKSDYQEGMTVEEALKFSVKVMAKTMDTTTPTAEKLEFSTLTRNEQGKLVHRLLTAAETDALLKDVGAQTADSGDI 250
BLAST of mRNA_H-elongata_contig7003.14658.1 vs. uniprot
Match: A0A7S2XZ80_9STRA (Proteasome subunit alpha type n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZ80_9STRA) HSP 1 Score: 90.1 bits (222), Expect = 2.880e-20 Identity = 43/80 (53.75%), Postives = 63/80 (78.75%), Query Frame = 1
Query: 1 AGKSLLKSDYEEDASVEACLKLAVKVLNKTMDSTTPTPEKMEFTTITRVNGKIVHKILPDEETDKILKEVAAEVSSQGDV 240
AGKSLLK++Y + +V+ L+LA KVLNK+MD+TTP+ EKMEF T+T +G++ H ILP+ ET KIL++V A +++GD+
Sbjct: 170 AGKSLLKTEYSDTLTVDEALELAAKVLNKSMDTTTPSAEKMEFFTLTLKDGQVQHSILPEAETTKILEKVQAAATTEGDI 249
BLAST of mRNA_H-elongata_contig7003.14658.1 vs. uniprot
Match: A0A8K1FDB1_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FDB1_PYTOL) HSP 1 Score: 89.7 bits (221), Expect = 4.120e-20 Identity = 47/81 (58.02%), Postives = 63/81 (77.78%), Query Frame = 1
Query: 1 AGKSLLKSDYEEDASVEACLKLAVKVLNKTMDSTTPTPEKMEFTTITR-VNGKIVHKILPDEETDKILKEVAAEVSSQGDV 240
A KSLLK++Y+E+ +V LK AVKV++KTMDST+ + EK+EFTT+TR NGK+VH+ L ETD +LKEV AE +S GD+
Sbjct: 170 AAKSLLKNEYDENLNVSDALKFAVKVMSKTMDSTSLSAEKLEFTTVTRDENGKVVHRQLTQAETDALLKEVEAEKASAGDI 250
BLAST of mRNA_H-elongata_contig7003.14658.1 vs. uniprot
Match: A0A7S2FKK0_9STRA (Proteasome subunit alpha type n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FKK0_9STRA) HSP 1 Score: 90.1 bits (222), Expect = 4.330e-20 Identity = 45/80 (56.25%), Postives = 60/80 (75.00%), Query Frame = 1
Query: 1 AGKSLLKSDYEEDASVEACLKLAVKVLNKTMDSTTPTPEKMEFTTITRVNGKIVHKILPDEETDKILKEVAAEVSSQGDV 240
AGK LLK++YEE A+V LKLA KVL KTMD+T+ T EK+EF +T+ GK+V +ILP+ ET +L VAA+ S++GDV
Sbjct: 194 AGKGLLKNEYEETATVSDALKLAAKVLQKTMDATSATAEKVEFMVLTKEGGKLVQRILPESETTAVLAAVAADASNEGDV 273
BLAST of mRNA_H-elongata_contig7003.14658.1 vs. uniprot
Match: A0A0W8DG73_PHYNI (Sodium/potassium-transporting ATPase subunit alpha-2 n=9 Tax=Phytophthora TaxID=4783 RepID=A0A0W8DG73_PHYNI) HSP 1 Score: 92.0 bits (227), Expect = 6.250e-20 Identity = 46/81 (56.79%), Postives = 66/81 (81.48%), Query Frame = 1
Query: 1 AGKSLLKSDYEEDASVEACLKLAVKVLNKTMDSTTPTPEKMEFTTITR-VNGKIVHKILPDEETDKILKEVAAEVSSQGDV 240
A KS+LKSDYEE +VE L +VKV+NKTMDST+P+ EK+EFTT+TR +GKIVH+ L ++ET+++L++ AA+ +S GD+
Sbjct: 611 AAKSMLKSDYEEGMTVEDALAFSVKVMNKTMDSTSPSAEKLEFTTVTRNPDGKIVHRQLTEKETEELLQKAAADTASSGDM 691 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7003.14658.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig7003.14658.1 >prot_H-elongata_contig7003.14658.1 ID=prot_H-elongata_contig7003.14658.1|Name=mRNA_H-elongata_contig7003.14658.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=81bp AGKSLLKSDYEEDASVEACLKLAVKVLNKTMDSTTPTPEKMEFTTITRVNback to top mRNA from alignment at H-elongata_contig7003:8081..9114+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig7003.14658.1 ID=mRNA_H-elongata_contig7003.14658.1|Name=mRNA_H-elongata_contig7003.14658.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1034bp|location=Sequence derived from alignment at H-elongata_contig7003:8081..9114+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig7003:8081..9114+ >mRNA_H-elongata_contig7003.14658.1 ID=mRNA_H-elongata_contig7003.14658.1|Name=mRNA_H-elongata_contig7003.14658.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=486bp|location=Sequence derived from alignment at H-elongata_contig7003:8081..9114+ (Himanthalia elongata Himel1 dioecious)back to top |