mRNA_H-elongata_contig70012.14653.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig70012.14653.1
Unique NamemRNA_H-elongata_contig70012.14653.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig70012.14653.1 vs. uniprot
Match: D7FT74_ECTSI (UBX domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT74_ECTSI)

HSP 1 Score: 446 bits (1147), Expect = 3.810e-148
Identity = 271/456 (59.43%), Postives = 313/456 (68.64%), Query Frame = 1
Query:   25 DRIRTGGIDYKEPLLPVAAGGEGDKVLLPPSALEALSSQDAVSLGPMLFELTST----------MPVQLEGDDVGVTTASRTTHAGVLEFVADEGTIGLPRKVMQSLLVTSGQSGAEGPSEPHSVDAARDNGWEAFGRKGAGILGDGIIRVRYVRLAKATFARVVPETIGLSQMSELRAMLEQNLRNHATLTVGDRLSVWRRGKEFHLK-------------------VVELRPEAQVTLIDTDMELELDLPEEAREQLEEQGARDRGKTLRAHMDAKS-SSGSASPVQSLSPTSK----ATGAGSAXXXXXXXXXXATGKDIFAMSD-DGEDDSDLDLDDEQAK----KESAFDPSKHRLSMLKQLPEEPPLGENGVFTCQLRSPGGKHTRRFRFEDGVGVLLDFAEAQGGIPGHYRIVVPFPRRVLTRDEAALGMTLREAGLTSKQESVILERV 1275
            D+IRT GI YKE LL V A GEGDK+LLPPSALE LS QDAV LGPMLFELT T           P +      G  T +RTTHAGVLEFVADEGTIGLPRKV+ SLL   G +  + PS     + + ++  E    +   + G   + VRYVRLAKATFARVVPET+GLSQ+SELRAMLE N+RNHATLTVGD LSVWRRGKEF LK                   VVELRPE QVT+IDTDME+ELDLPE+AREQL+E+GA+DR KTLRAHM A + SS  +SP QSLSP       A G   +           TG  +  M D + +DDSDLD DDE++     K+ AFD  KHRL+  +QLPEEPP  E GVFTCQLR+  GK TRRFRF D +GVLLDF EAQGG+PG YR+V+PFPRRVLTRD+A+ G TL EAGLTSKQESVILER+
Sbjct:   71 DQIRTAGISYKESLLAVTADGEGDKILLPPSALECLSRQDAVGLGPMLFELTCTTSGAAPTSQQQPEKAPALQGGTITTTRTTHAGVLEFVADEGTIGLPRKVVLSLL---GAAAHQVPSRTSDENISANDDPENAKAERPAVEGLENVVVRYVRLAKATFARVVPETVGLSQVSELRAMLEHNMRNHATLTVGDHLSVWRRGKEFSLKSEDSHSPLTPEREPPLTMQVVELRPEPQVTVIDTDMEIELDLPEKAREQLQEKGAQDRAKTLRAHMGAATISSRGSSPTQSLSPPPSGRGYAVGGKGSSVAAGGRDTSTTG--LSPMDDSESDDDSDLDSDDERSTPGGPKKGAFDLEKHRLAKFQQLPEEPPRDEEGVFTCQLRTTEGKFTRRFRFADALGVLLDFCEAQGGVPGQYRLVMPFPRRVLTRDDASAGTTLHEAGLTSKQESVILERL 521          
BLAST of mRNA_H-elongata_contig70012.14653.1 vs. uniprot
Match: A0A4D9CT31_9STRA (UBX domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CT31_9STRA)

HSP 1 Score: 172 bits (437), Expect = 4.610e-44
Identity = 151/428 (35.28%), Postives = 215/428 (50.23%), Query Frame = 1
Query:   37 TGGIDYKEPLLPVAAGGEGDKVLLPPSALEALSSQDAVSLGPMLFELTSTMPVQLEGD-DVGVTTASRTTHAGVLEFVADEGTIGLPRKVMQSLLVT---SGQSGAEGPSEPHSVDAARDNGWEAFGRKGAGILGDGIIRVRYVRLAKATFARVVPETIGLSQMSELRAMLEQNLRNHATLTVGDRLSVWRRGKEFHLKVVELRPEAQVTLIDTDMELELDLPEEA--REQLEEQGARDRGKTLRAHMDAKSSSGSASPVQSLSPTSKATGAGSAXXXXXXXXXXATGKDIFAMSDDGEDDSDLDLDDEQAKKESAFDPSKHRLSMLKQLPEEPPLGENGVFTCQLRSPGGKH-TRRFRFEDGVGVLLDFAEAQGGIPGH------YRIVVPFPRRVLTRDEAA---LGMTL-REAGLTSKQESVILE 1269
            T GI Y   L P    GEGDK++LPPSALE L+ QDA++LGPMLF+L S +P   EG+    +   +R THAGVLEF A++G IGLP KV +SL+     + + G+ G  E        +    A    G+G      +RV+YVRL K T+A+V P T  L  + EL+ MLE NL+NHATL+ GD L VW RG+ F L+V  L P   VT+IDTD+ +++++PEE   RE+ E + + D G      +      G   P   +S + ++ G                G +  +++   +++       E+ K+  A        + L +L  EP  G        +R P G   +RRF        +  F EA      H      YR+V  FPRRV T  E A   +G  L  EAG   K+E+++ E
Sbjct:   71 TAGITYSCDLWPYTVSGEGDKIILPPSALETLTQQDALALGPMLFQL-SLLPA--EGNKSKQLPAGARVTHAGVLEFSAEDGRIGLPLKVRKSLVAEPEETREDGSRGMKERVEGPGGEEGDSRASPAWGSGWK----VRVKYVRLEKGTYAKVQPRTGNLWHVPELKGMLEMNLQNHATLSEGDVLQVWYRGRCFDLRVTGLEPTQAVTVIDTDLTVDVEVPEEQTEREREESRLSADAGGVKGQVV------GGGGPPPHVSQSCESRG-------------QEAGMEEPSVNSGAKEE-------ERRKRMMA--------TQLSKLAPEPDEGNGDWIALVVRKPDGSMISRRFLRSQPFQDVFRFVEATSVSSDHDPLDMTYRLVTRFPRRVFTVGETAAQSVGEVLGSEAG---KRETLMYE 454          
BLAST of mRNA_H-elongata_contig70012.14653.1 vs. uniprot
Match: A0A662YG13_9STRA (UBX domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YG13_9STRA)

HSP 1 Score: 134 bits (337), Expect = 1.590e-30
Identity = 100/241 (41.49%), Postives = 130/241 (53.94%), Query Frame = 1
Query:   37 TGGIDYKEPLLPVAAGGEGDKVLLPPSALEALSSQDAVSLGPMLFELTSTMPVQLEGDDVGVTTASRTTHAGVLEFVADEGTIGLPRKVMQSLLVTSGQSGAEGPSEPHSVDAARDNGWEAFGRKGAGILGDGIIRVRYVRLAKATFARVVPETIGLSQMS-ELRAMLEQNLRNHATLTVGDRLSVWRRGKE-FHLKVVELRPEAQVTLIDTDMELELDLP-------EEAREQLEEQGAR 732
            TGGI Y + L PV   G+GDK+ LP SALE L+ Q+A+ LG   FEL+   P   E          R THAGVLEFVADEGT+GLP KV  SL   + Q                DN                 IRVR+VRL K  FA + P   G  +   + + +LE++L+ H TLTVGD L V R G+E F + V EL+PE  V +++TD+E+ + LP       +EA +QLEE+ AR
Sbjct:   73 TGGIKYLQQLRPVPTSGDGDKITLPVSALEELNPQNALELGVFTFELSYDEPEATES-------WQRKTHAGVLEFVADEGTVGLPPKVAASLFQNAKQ--------------LPDN-----------------IRVRFVRLEKGKFASLQPRGDGFGERQIDFKHLLERSLKAHTTLTVGDVLFV-RHGRETFEVVVAELKPEEAVNILNTDLEVAI-LPSESAARAKEAEKQLEEEAAR 273          
BLAST of mRNA_H-elongata_contig70012.14653.1 vs. uniprot
Match: A0A7S3XVE0_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XVE0_HETAK)

HSP 1 Score: 126 bits (317), Expect = 1.840e-30
Identity = 70/148 (47.30%), Postives = 93/148 (62.84%), Query Frame = 1
Query:  229 ASRTTHAGVLEFVADEGTIGLPRKVMQSLLVTSGQSGAEGPS-EPHSVDAARDNGWEAFGRKGAGILGDGIIRVRYVRLAKATFARVVPETIGLSQMSELRAMLEQNLRNHATLTVGDRLSVWRRGKEFHLKVVELRPEAQVTLIDTD 669
            A+ TTH GVLEF A+EG +GLP KV+ SL +   Q   +     P SV                     G ++++Y+RL KATFA++ PE  GLSQ+ E+RA+LE N+RNHATL++GD+L VW RGK F  +V+ELRP A  T+IDTD
Sbjct:   11 AAGTTHCGVLEFTAEEGCVGLPPKVLASLGIAPEQDNTQHQGVAPSSV---------------------GQVQIKYIRLEKATFAKIRPEKAGLSQIDEIRAVLEHNMRNHATLSLGDKLIVWFRGKAFECEVLELRPAAACTVIDTD 137          
BLAST of mRNA_H-elongata_contig70012.14653.1 vs. uniprot
Match: K3WWI9_GLOUD (UBX domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WWI9_GLOUD)

HSP 1 Score: 132 bits (332), Expect = 2.520e-29
Identity = 93/224 (41.52%), Postives = 123/224 (54.91%), Query Frame = 1
Query:   37 TGGIDYKEPLLPVAAGGEGDKVLLPPSALEALSSQDAVSLGPMLFELTSTMPVQLEGDDVGVTTASRTTHAGVLEFVADEGTIGLPRKVMQSLLVTSGQSGAEGPSEPHSVDAARDNGWEAFGRKGAGILGDGIIRVRYVRLAKATFARVVPETIGLSQMS-ELRAMLEQNLRNHATLTVGDRLSVWRRGKE-FHLKVVELRPEAQVTLIDTDMELELDLPEEA 702
            TGGI Y + L PV A  +GDK+ LP SALE L+ Q+A  LG   FEL    P+         T  +R THAGVLEFVA+EGT+GLP KV  SL    G S       P ++                        +V+Y+RL K  FA + P  +G  +   + + +LE++L+ H TLTVGD L V R GKE F + V EL+PEA V +++TD+E+ L LP EA
Sbjct:   73 TGGIKYLQRLRPVPAVTDGDKITLPVSALEELNPQNAHELGVFTFELLYEDPL---------TQTTRKTHAGVLEFVAEEGTVGLPPKVAASLFRNLGGSSNSVGQVPEAI------------------------QVKYIRLEKGKFASLQPRGVGFGEREIDFKKILERSLKAHTTLTVGDVLFV-RHGKETFEVLVAELQPEAAVNILNTDLEVAL-LPSEA 261          
BLAST of mRNA_H-elongata_contig70012.14653.1 vs. uniprot
Match: A0A329RIV7_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329RIV7_9STRA)

HSP 1 Score: 131 bits (330), Expect = 4.160e-29
Identity = 95/241 (39.42%), Postives = 130/241 (53.94%), Query Frame = 1
Query:   37 TGGIDYKEPLLPVAAGGEGDKVLLPPSALEALSSQDAVSLGPMLFELTSTMPVQLEGDDVGVTTASRTTHAGVLEFVADEGTIGLPRKVMQSLLVTSGQSGAEGPSEPHSVDAARDNGWEAFGRKGAGILGDGIIRVRYVRLAKATFARVVPETIGLSQMS-ELRAMLEQNLRNHATLTVGDRLSVWRRGKE-FHLKVVELRPEAQVTLIDTDMELELDLP-------EEAREQLEEQGAR 732
            TGGI Y + L PV   G+GDK+ LP SALE L  Q+A+ LG   FEL+       +  D G +T  R THAGVLEFVA+EGT+GLP KV  SL   + Q                                 G I+VR+VRL K  FA + P   G      + + MLE++L+ H TLT GD L V R G+E F + V EL+PE  + +++TD+E+++ +P       +EA ++LEE+ AR
Sbjct:   73 TGGIKYLQQLRPVPTKGDGDKITLPVSALEELDPQNALELGVFTFELS----FDEDHHDGGASTLKRQTHAGVLEFVAEEGTVGLPPKVATSLFRYTKQL-------------------------------PGSIKVRFVRLEKGRFATLQPRGEGFGDRQIDFKHMLERSLKTHTTLTEGDVLFV-RHGRETFEVLVAELKPERAINILNTDLEVDM-IPCEAVVKKKEAEKRLEEEAAR 276          
BLAST of mRNA_H-elongata_contig70012.14653.1 vs. uniprot
Match: A0A484E4L3_BRELC (UBA domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E4L3_BRELC)

HSP 1 Score: 130 bits (328), Expect = 6.820e-29
Identity = 103/256 (40.23%), Postives = 143/256 (55.86%), Query Frame = 1
Query:    1 QARRQEEADRIRTGGIDYKEPLLPVAAGGEGDKVLLPPSALEALSSQDAVSLGPMLFELTSTMPVQLEGDDVGVTTAS--RTTHAGVLEFVADEGTIGLPRKVMQSLLVTSGQSGAEGPSEPHSVDAARDNGWEAFGRKGAGILGDGIIRVRYVRLAKATFARVVPETIGLSQMS-ELRAMLEQNLRNHATLTVGDRLSVWRRGKE-FHLKVVELRPEAQVTLIDTDMELELDLPEEAREQLEEQGARDRGKTLRA 756
            Q +++ EA R+ TGGI Y E L P     +GDK+ LP SALE L+ Q+A  LG + FEL+  +P   + D  GV T S  R THAGVLEF A EGT+GLP KV  SL            S P+ +                      +++VRYVRL K  FAR+ P+  G      +L+ +LEQ+L+ H TLT GD + V R G+E F++ V +L+PE  VT+++TD+E++L +P EA   L+E   R   +  RA
Sbjct:   62 QEQQELEAQRL-TGGIQYLEQLEPFPTTTDGDKITLPVSALEMLNPQNAFELGVLTFELS--LP---KDDATGVETKSPQRFTHAGVLEFTAREGTVGLPPKVTASLF----------QSRPNLLHC--------------------LVQVRYVRLEKGKFARLQPQGEGFKDRQLDLKPLLEQSLQTHTTLTEGDVVFV-RHGRETFNVIVTKLKPEKAVTILNTDLEVDL-IPCEAVAALQEDEKRIEEEAARA 279          
BLAST of mRNA_H-elongata_contig70012.14653.1 vs. uniprot
Match: A0A3R7KPJ2_9STRA (UBX domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7KPJ2_9STRA)

HSP 1 Score: 129 bits (325), Expect = 1.940e-28
Identity = 97/240 (40.42%), Postives = 133/240 (55.42%), Query Frame = 1
Query:   37 TGGIDYKEPLLPVAAGGEGDKVLLPPSALEALSSQDAVSLGPMLFELTSTMPVQLEGDDVGVTTASRTTHAGVLEFVADEGTIGLPRKVMQSLLVTSGQSGAEGPSEPHSVDAARDNGWEAFGRKGAGILGDGIIRVRYVRLAKATFARVVPETIGLSQMS-ELRAMLEQNLRNHATLTVGDRLSVWRRGKE-FHLKVVELRPEAQVTLIDTDMELELDLPE------EAREQLEEQGAR 732
            TGGI Y + L+PV   G+GDK+ LP SALE L+ Q+A+ LG   FEL+     Q +G++  +      THAGVLEFVADEGT+GLP KV  SL   +           H  ++                     IRVR+VRL K  FAR+     G      + + MLE++LR+H TL VGD L V R G+E F + V EL+PEA V +++TD+E+++   E      EA ++LEE+ AR
Sbjct:   73 TGGIKYLQQLIPVPTTGDGDKITLPVSALEELNPQNALELGVFTFELSYEEHGQ-QGENERIL-----THAGVLEFVADEGTVGLPPKVAASLFQQT----------EHLPES---------------------IRVRFVRLEKGKFARLQARGDGFGDRQIDFKHMLERSLRSHTTLMVGDVLFV-RHGRETFEVVVAELKPEAAVNILNTDLEVDIVPSEAATQAKEAEKRLEEEAAR 274          
BLAST of mRNA_H-elongata_contig70012.14653.1 vs. uniprot
Match: A0A3M6VL54_9STRA (Uncharacterized protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VL54_9STRA)

HSP 1 Score: 129 bits (324), Expect = 2.520e-28
Identity = 99/247 (40.08%), Postives = 135/247 (54.66%), Query Frame = 1
Query:   19 EADRIRTGGIDYKEPLLPVAAGGEGDKVLLPPSALEALSSQDAVSLGPMLFELTSTMPVQLEGDDVGVTTASRTTHAGVLEFVADEGTIGLPRKVMQSLLVTSGQSGAEGPSEPHSVDAARDNGWEAFGRKGAGILGDGIIRVRYVRLAKATFARVVPETIGL-SQMSELRAMLEQNLRNHATLTVGDRLSVWRRGKE-FHLKVVELRPEAQVTLIDTDMELELDLP-------EEAREQLEEQGAR 732
            E  RI TGGI Y + L PV    +GDK+ LP SALE L+ Q+A+ LG   FEL+     Q      G TT  R THAGVLEFVADEGT+GLP KV  SL     +   E P                           G I+VR+VRL K TFA + P+  G   +  + + MLE++L+ H TLT GD L + R GKE F + V  L+PE  + +++TD+E+++ +P       +EA +Q++E+ AR
Sbjct:   68 EEQRI-TGGIKYLQQLRPVPTTEDGDKITLPVSALEELNPQNALELGVFTFELS--FEDQYVTQTSGETTIKRQTHAGVLEFVADEGTVGLPPKVAASLF----KYATEIP---------------------------GSIQVRFVRLEKGTFASLQPKGNGFCDRQIDFKHMLERSLKTHTTLTEGDVLFI-RHGKETFEVLVSGLKPERAINILNTDLEVDM-IPCEAVIKAKEAEKQMDEEAAR 278          
BLAST of mRNA_H-elongata_contig70012.14653.1 vs. uniprot
Match: W7T6G4_9STRA (Ubiquitin fusion degradaton n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T6G4_9STRA)

HSP 1 Score: 126 bits (316), Expect = 2.580e-28
Identity = 129/387 (33.33%), Postives = 180/387 (46.51%), Query Frame = 1
Query:  163 MLFELTSTMPVQLEGD-DVGVTTASRTTHAGVLEFVADEGTIGLPRKVMQSLLVTSGQSGAEGPSEPHSVDAARDNGWEAFGRKGAGILGDGIIRVRYVRLAKATFARVVPETIGLSQMSELRAMLEQNLRNHATLTVGDRLSVWRRGKEFHLKVVELRPEAQVTLIDTDMELELDLPEEA--REQLEEQGARDRGKTLRAHMDAKSSSGSASPVQSLSPTSKATGAGSAXXXXXXXXXXATGKDIFAMSDDGEDDSDLDLDDEQAKKESAFDPSKHRLSM----LKQLPEEPPLGENGVFTCQLRSPGGKH-TRRFRFEDGVGVLLDFAEAQGGIPGH------YRIVVPFPRRVLTRDEAA---LGMTL-REAGLTSKQESVILE 1269
            MLF+L S +P   EG+    +   +R THAGVLEF A++G IGLP KV +SL     ++  +G S           G E   R+ +       +RV+YVRL K T+A+V P T  L  + EL+ MLE NL+NHATL+ GD L VW RG+ F L+V+ L P   VT+IDTD+ +++++PEE   RE++E++ + D G      +      G   P  S S  S+   AG                                   E++   S     + R SM    L +L  EP  G        +R P G   +RRF        +  F EA      H      YR+V  FPRRV T  E A   +G  L  EAG   K+E+++ E
Sbjct:    1 MLFQL-SLLPA--EGNKSKQLPAGARVTHAGVLEFSAEDGRIGLPLKVRKSLEAEPEETREDG-SRGMEKRMEGPGGEEGDSRESSAWGSGWKVRVKYVRLEKGTYAKVQPRTGNLWHVPELKGMLEMNLQNHATLSEGDVLQVWYRGRCFDLRVIGLEPTQAVTVIDTDLTVDVEVPEEQTERERVEKRLSTDAGGVKGQVVGG----GGPPPRVSQSCESRGQEAGM----------------------------------EESSVNSGAKEEERRKSMIAAQLSKLAPEPDEGNGDWIALVVRKPDGSMISRRFLRSQPFQDVFRFVEATSVSSDHDRLHMTYRLVTRFPRRVFTVGETAAQSVGEVLGSEAG---KRETLMYE 342          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig70012.14653.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FT74_ECTSI3.810e-14859.43UBX domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A4D9CT31_9STRA4.610e-4435.28UBX domain-containing protein n=1 Tax=Nannochlorop... [more]
A0A662YG13_9STRA1.590e-3041.49UBX domain-containing protein n=1 Tax=Nothophytoph... [more]
A0A7S3XVE0_HETAK1.840e-3047.30Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
K3WWI9_GLOUD2.520e-2941.52UBX domain-containing protein n=1 Tax=Globisporang... [more]
A0A329RIV7_9STRA4.160e-2939.42Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]
A0A484E4L3_BRELC6.820e-2940.23UBA domain-containing protein n=1 Tax=Bremia lactu... [more]
A0A3R7KPJ2_9STRA1.940e-2840.42UBX domain-containing protein n=3 Tax=Phytophthora... [more]
A0A3M6VL54_9STRA2.520e-2840.08Uncharacterized protein n=2 Tax=Peronospora effusa... [more]
W7T6G4_9STRA2.580e-2833.33Ubiquitin fusion degradaton n=1 Tax=Nannochloropsi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig70012contigH-elongata_contig70012:1061..3169 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score387.5
Seed ortholog evalue7e-105
Seed eggNOG ortholog2880.D7FT74
Preferred nameubxn8
KEGG koko:K14016,ko:K18726
KEGG Pathwayko04141,map04141
KEGG ModuleM00400,M00403
EggNOG free text desc.ER-associated misfolded protein catabolic process
EggNOG OGsCOG5140@1,KOG1363@1,KOG1363@2759,KOG1816@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionUbiquitin fusion degradation protein UFD1
Ec32 orthologEc-06_003840.1
Exons2
Model size1756
Cds size1116
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig70012.14653.1prot_H-elongata_contig70012.14653.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig70012 1223..2691 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931098.1541574-UTR-H-elongata_contig70012:1060..12221622931098.1541574-UTR-H-elongata_contig70012:1060..1222Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig70012 1061..1222 +
1691679697.0718088-UTR-H-elongata_contig70012:1060..12221691679697.0718088-UTR-H-elongata_contig70012:1060..1222Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig70012 1061..1222 +
1622931098.214564-UTR-H-elongata_contig70012:2691..31691622931098.214564-UTR-H-elongata_contig70012:2691..3169Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig70012 2692..3169 +
1691679697.112448-UTR-H-elongata_contig70012:2691..31691691679697.112448-UTR-H-elongata_contig70012:2691..3169Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig70012 2692..3169 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931098.17502-CDS-H-elongata_contig70012:1222..16811622931098.17502-CDS-H-elongata_contig70012:1222..1681Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70012 1223..1681 +
1691679697.0830092-CDS-H-elongata_contig70012:1222..16811691679697.0830092-CDS-H-elongata_contig70012:1222..1681Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70012 1223..1681 +
1622931098.196005-CDS-H-elongata_contig70012:2034..26911622931098.196005-CDS-H-elongata_contig70012:2034..2691Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70012 2035..2691 +
1691679697.095047-CDS-H-elongata_contig70012:2034..26911691679697.095047-CDS-H-elongata_contig70012:2034..2691Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70012 2035..2691 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig70012.14653.1

>prot_H-elongata_contig70012.14653.1 ID=prot_H-elongata_contig70012.14653.1|Name=mRNA_H-elongata_contig70012.14653.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=372bp
MLFELTSTMPVQLEGDDVGVTTASRTTHAGVLEFVADEGTIGLPRKVMQS
LLVTSGQSGAEGPSEPHSVDAARDNGWEAFGRKGAGILGDGIIRVRYVRL
AKATFARVVPETIGLSQMSELRAMLEQNLRNHATLTVGDRLSVWRRGKEF
HLKVVELRPEAQVTLIDTDMELELDLPEEAREQLEEQGARDRGKTLRAHM
DAKSSSGSASPVQSLSPTSKATGAGSAARGGGGGATGATGKDIFAMSDDG
EDDSDLDLDDEQAKKESAFDPSKHRLSMLKQLPEEPPLGENGVFTCQLRS
PGGKHTRRFRFEDGVGVLLDFAEAQGGIPGHYRIVVPFPRRVLTRDEAAL
GMTLREAGLTSKQESVILERV*
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mRNA from alignment at H-elongata_contig70012:1061..3169+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig70012.14653.1 ID=mRNA_H-elongata_contig70012.14653.1|Name=mRNA_H-elongata_contig70012.14653.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2109bp|location=Sequence derived from alignment at H-elongata_contig70012:1061..3169+ (Himanthalia elongata Himel1 dioecious)
CAGGCGAGGAGGCAAGAAGAGGCTGACAGAATCCGCACCGGGGGTATCGA CTACAAGGAACCTCTCCTGCCGGTTGCTGCCGGCGGGGAAGGAGACAAGG TTCTTCTTCCGCCCTCCGCGCTCGAGGCCCTCTCAAGCCAAGACGCCGTC AGTTTGGGGCCCATGCTGTTCGAGCTCACGTCTACAATGCCCGTCCAGCT GGAGGGGGACGACGTTGGAGTAACAACGGCAAGCCGAACCACCCACGCAG GAGTTCTGGAGTTCGTTGCGGACGAGGGCACCATCGGCCTTCCTCGCAAG GTGATGCAGAGCCTCCTCGTTACGTCCGGGCAGTCGGGAGCCGAAGGGCC GTCGGAGCCCCATTCGGTTGACGCAGCAAGAGACAACGGGTGGGAAGCGT TTGGTCGGAAAGGAGCGGGGATCCTAGGGGACGGGATCATTAGGGTGCGG TACGTTCGACTCGCGAAGGCGACGTTCGCCAGGGTGGTCCCGGAGACGAT CGGTCTGTCGCAGATGTCCGAACTGAGGGCGATGCTAGAGCAGAACCTGC GAAACCACGCGACGCTCACGGTCGGGGATCGTCTCAGCGTGTGGCGACGA GGGAAGGAGTTCCATCTGAAGGTGGGATTTTCAGGGAGGGTGTTTATGGA GGCTCCCCGAGTCACACCGGGGCCAGATGTCCTGAAAATTTTCCCCAGGA ACTGTCACTTGTGTGTATGGACAAAGTCGGGTCCGCTGAGAAGCTGACAG GTGTTACAACGACGATCGTTTTTTTTTAAATCTTACCTGGTATCAAAATA CTAAAGCATTAATAGTATAAAGTGATCGAGCTTGTCCTCCAGGGGGCAAA TACGTTAATGATGCACATCCGTATGACTCTTTGTAGATGATCTATCAGCT CGTTGGACCCGCAGGGGTGCTTCACAATGAAACCGAACAGGCAATGCCAA TGTCCGTCCTCAATAAACCAACAGGTTGTGGAGCTGCGCCCCGAGGCACA AGTGACGCTGATTGATACGGATATGGAGCTCGAGCTAGACCTGCCTGAGG AGGCCAGGGAGCAGCTCGAGGAGCAGGGTGCCCGCGACCGAGGGAAGACC CTGCGAGCACACATGGATGCGAAGTCATCCTCGGGCTCCGCATCGCCGGT TCAAAGCTTGTCTCCGACATCGAAGGCTACGGGAGCAGGGTCTGCTGCGC GAGGAGGGGGGGGCGGGGCGACGGGGGCAACGGGCAAGGATATTTTCGCA ATGAGTGATGATGGCGAAGACGATTCGGACCTCGATTTGGACGACGAACA AGCGAAGAAAGAAAGCGCATTCGACCCCTCGAAGCACCGTCTGAGCATGC TCAAACAGCTCCCTGAAGAGCCTCCCCTTGGCGAAAACGGAGTTTTCACG TGCCAGCTGAGGAGTCCTGGGGGGAAACATACGAGGCGGTTTCGGTTCGA GGACGGTGTCGGGGTGTTGCTTGACTTCGCCGAGGCGCAAGGCGGCATTC CCGGACATTACAGAATAGTCGTGCCTTTCCCGAGAAGGGTTTTGACGAGA GATGAGGCTGCGTTGGGCATGACGCTGCGGGAGGCGGGACTCACGTCTAA GCAGGAGTCAGTGATCTTGGAAAGAGTCTAGCTCTTTTCAAGTAGTAAGT GCTTCGTTAAGTGAAGCCACGCGAGGATTTTAGACGAGCCTTACATATAT GAAATTATAGTTGACGTTTGATAAAGCACACACGCTAGGAACTCAGGTCA GTTCAGAAATCTTTGACTGAAACTGAATTTTCCTCGAAAACTTTCCGGAA TCGAGTGTTCTGTGGCAAAAACTTCGATTGCCAATACTTTTTGAATGGGT TAAGTCGCATTTTTTTGTGCCACACTCCAGGAGGAGCACATCTGGTATAT GTATGTAAGAAGTATGCATATATACCAGCATATATTTATTAAATTGCACA TAACCGCGCAATCCGGCCCTGTCATCCTAGTCATCCTGGGGAGATCAATA ATACTTATTACGAAAACCTCTGATCAAACGCGACAAAGGGGACACACTCT CTCTACTTGTACAATTCCTACTCGAGCCCTGAGTAACTTGGGCTCCCCCT CTTGCTCCC
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Coding sequence (CDS) from alignment at H-elongata_contig70012:1061..3169+

>mRNA_H-elongata_contig70012.14653.1 ID=mRNA_H-elongata_contig70012.14653.1|Name=mRNA_H-elongata_contig70012.14653.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2232bp|location=Sequence derived from alignment at H-elongata_contig70012:1061..3169+ (Himanthalia elongata Himel1 dioecious)
ATGCTGTTCGAGCTCACGTCTACAATGCCCGTCCAGCTGGAGGGGGACGA
CGTTGGAGTAACAACGGCAAGCCGAACCACCCACGCAGGAGTTCTGGAGT
TCGTTGCGGACGAGGGCACCATCGGCCTTCCTCGCAAGGTGATGCAGAGC
CTCCTCGTTACGTCCGGGCAGTCGGGAGCCGAAGGGCCGTCGGAGCCCCA
TTCGGTTGACGCAGCAAGAGACAACGGGTGGGAAGCGTTTGGTCGGAAAG
GAGCGGGGATCCTAGGGGACGGGATCATTAGGGTGCGGTACGTTCGACTC
GCGAAGGCGACGTTCGCCAGGGTGGTCCCGGAGACGATCGGTCTGTCGCA
GATGTCCGAACTGAGGGCGATGCTAGAGCAGAACCTGCGAAACCACGCGA
CGCTCACGGTCGGGGATCGTCTCAGCGTGTGGCGACGAGGGAAGGAGTTC
CATCTGAAGATGCTGTTCGAGCTCACGTCTACAATGCCCGTCCAGCTGGA
GGGGGACGACGTTGGAGTAACAACGGCAAGCCGAACCACCCACGCAGGAG
TTCTGGAGTTCGTTGCGGACGAGGGCACCATCGGCCTTCCTCGCAAGGTG
ATGCAGAGCCTCCTCGTTACGTCCGGGCAGTCGGGAGCCGAAGGGCCGTC
GGAGCCCCATTCGGTTGACGCAGCAAGAGACAACGGGTGGGAAGCGTTTG
GTCGGAAAGGAGCGGGGATCCTAGGGGACGGGATCATTAGGGTGCGGTAC
GTTCGACTCGCGAAGGCGACGTTCGCCAGGGTGGTCCCGGAGACGATCGG
TCTGTCGCAGATGTCCGAACTGAGGGCGATGCTAGAGCAGAACCTGCGAA
ACCACGCGACGCTCACGGTCGGGGATCGTCTCAGCGTGTGGCGACGAGGG
AAGGAGTTCCATCTGAAGGTTGTGGAGCTGCGCCCCGAGGCACAAGTGAC
GCTGATTGATACGGATATGGAGCTCGAGCTAGACCTGCCTGAGGAGGCCA
GGGAGCAGCTCGAGGAGCAGGGTGCCCGCGACCGAGGGAAGACCCTGCGA
GCACACATGGATGCGAAGTCATCCTCGGGCTCCGCATCGCCGGTTCAAAG
CTTGTCTCCGACATCGAAGGCTACGGGAGCAGGGTCTGCTGCGCGAGGAG
GGGGGGGCGGGGCGACGGGGGCAACGGGCAAGGATATTTTCGCAATGAGT
GATGATGGCGAAGACGATTCGGACCTCGATTTGGACGACGAACAAGCGAA
GAAAGAAAGCGCATTCGACCCCTCGAAGCACCGTCTGAGCATGCTCAAAC
AGCTCCCTGAAGAGCCTCCCCTTGGCGAAAACGGAGTTTTCACGTGCCAG
CTGAGGAGTCCTGGGGGGAAACATACGAGGCGGTTTCGGTTCGAGGACGG
TGTCGGGGTGTTGCTTGACTTCGCCGAGGCGCAAGGCGGCATTCCCGGAC
ATTACAGAATAGTCGTGCCTTTCCCGAGAAGGGTTTTGACGAGAGATGAG
GCTGCGTTGGGCATGACGCTGCGGGAGGCGGGACTCACGTCTAAGCAGGA
GTCAGTGATCTTGGAAAGAGTCTAGGTTGTGGAGCTGCGCCCCGAGGCAC
AAGTGACGCTGATTGATACGGATATGGAGCTCGAGCTAGACCTGCCTGAG
GAGGCCAGGGAGCAGCTCGAGGAGCAGGGTGCCCGCGACCGAGGGAAGAC
CCTGCGAGCACACATGGATGCGAAGTCATCCTCGGGCTCCGCATCGCCGG
TTCAAAGCTTGTCTCCGACATCGAAGGCTACGGGAGCAGGGTCTGCTGCG
CGAGGAGGGGGGGGCGGGGCGACGGGGGCAACGGGCAAGGATATTTTCGC
AATGAGTGATGATGGCGAAGACGATTCGGACCTCGATTTGGACGACGAAC
AAGCGAAGAAAGAAAGCGCATTCGACCCCTCGAAGCACCGTCTGAGCATG
CTCAAACAGCTCCCTGAAGAGCCTCCCCTTGGCGAAAACGGAGTTTTCAC
GTGCCAGCTGAGGAGTCCTGGGGGGAAACATACGAGGCGGTTTCGGTTCG
AGGACGGTGTCGGGGTGTTGCTTGACTTCGCCGAGGCGCAAGGCGGCATT
CCCGGACATTACAGAATAGTCGTGCCTTTCCCGAGAAGGGTTTTGACGAG
AGATGAGGCTGCGTTGGGCATGACGCTGCGGGAGGCGGGACTCACGTCTA
AGCAGGAGTCAGTGATCTTGGAAAGAGTCTAG
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