mRNA_H-elongata_contig70010.14652.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig70010.14652.1
Unique NamemRNA_H-elongata_contig70010.14652.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig70010.14652.1 vs. uniprot
Match: D8LDP0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDP0_ECTSI)

HSP 1 Score: 153 bits (386), Expect = 2.950e-42
Identity = 72/89 (80.90%), Postives = 76/89 (85.39%), Query Frame = 1 
Query:  184 QRRVPEDNGVRDAILSTFKHNPKKENPLYSTTNNDIGVKRPNVATFTFERRARQQGFSNSFNGLKFRDMGLNTYVTRSNIHDDLSPHFM 450
            + RVPED   RD +L  FKH  KKENPLYSTTNNDIG+KRP  ATFTFERRARQQGFSNSFNGLKFRDMGLNT VTRSNIHDDL+P FM
Sbjct:   57 RNRVPEDKDARDELLKNFKHTSKKENPLYSTTNNDIGIKRPTGATFTFERRARQQGFSNSFNGLKFRDMGLNTNVTRSNIHDDLNPQFM 145
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BLAST of mRNA_H-elongata_contig70010.14652.1 vs. uniprot
Match: A0A8J2SKS3_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SKS3_9STRA)

HSP 1 Score: 106 bits (264), Expect = 1.030e-23
Identity = 57/121 (47.11%), Postives = 73/121 (60.33%), Query Frame = 1 
Query:   67 QRHSLGQRAREKGLGKNPVMYEREEETGVPLRDATCYDLQRRVPEDNGVRDAILSTFKHNPKKENPLYSTTNNDIGVKRPNVATFTFERRARQQGFSNSFNGLKFRDMGLNTYVTRSNIHD 429
            Q H+    +R  G    P    R +  G P   AT    + R    + V + IL  +KH PKKE+ +Y TT+N IG  +PNVATFT ERRAR QGFSNSF G+K+R+ GL T VT+SN+HD
Sbjct:   71 QHHAPSNLSRAMGAQDTPAQLTRLKTMGAPASAATIAAAESRPSAADRV-ERILEIYKHAPKKEHEMYMTTSNVIGALKPNVATFTAERRARNQGFSNSFQGVKYRNQGLTTAVTKSNVHD 190
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BLAST of mRNA_H-elongata_contig70010.14652.1 vs. uniprot
Match: A0A7S1UKY3_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UKY3_9STRA)

HSP 1 Score: 102 bits (255), Expect = 2.520e-22
Identity = 56/139 (40.29%), Postives = 86/139 (61.87%), Query Frame = 1 
Query:    7 SEIIGKGVPPSDSKLAMVTSQRHSLGQRAREKGLGKNPVMYEREEETGVPLRDATCYDLQRRVPEDNGVRDAILSTFKHNPKKENPLYSTTNNDIGVKRPNVATFTFERRARQQGFSNSFNGLKFRDMGLNTYVTRSNI 423
            S  IGKG+  SDSKL+    +    G  A ++G G NP+     +E  +   D       ++V ++    +++L++++H PK E+ LY TT+NDIG+K+P+ AT+  ER +RQQ FSNSFNG+ +RD GLNT + +S I
Sbjct:   66 SAEIGKGIGMSDSKLSESMRREEPKGDIAFQRGRGLNPISPG--DEMTLATVDPDGLASMKQVGKEEVNVNSLLNSYRHAPKPEHALYPTTSNDIGLKKPSKATYVLERHSRQQRFSNSFNGILYRDQGLNTSMHKSKI 202
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BLAST of mRNA_H-elongata_contig70010.14652.1 vs. uniprot
Match: A0A7S3M5B3_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M5B3_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 2.150e-14
Identity = 36/75 (48.00%), Postives = 50/75 (66.67%), Query Frame = 1 
Query:  223 ILSTFKHNPKKENPLYSTTNNDIGVKRPNVATFTFERRARQQGFSNSFNGLKFRDMGLNTYVTRSNIHDDLSPHF 447
            +L+ +KH PK E+P Y+T+ +D G K P+VAT   +R AR Q FS SFN +K ++  L T +TRSN+H  L P F
Sbjct:  150 VLAVYKHEPKYEDPRYTTSTSDYGKKPPSVATLVVDRAARPQAFSRSFNNVKPQNTSLTTSITRSNVHSSLDPQF 224
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BLAST of mRNA_H-elongata_contig70010.14652.1 vs. uniprot
Match: A0A8K1CW28_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CW28_PYTOL)

HSP 1 Score: 65.1 bits (157), Expect = 8.980e-9
Identity = 30/60 (50.00%), Postives = 43/60 (71.67%), Query Frame = 1 
Query:  256 ENPLYSTTNNDIGVKRPNVATFTFERRARQQGFSNSFNGLKFRDMGLNTYVTRSNIHDDL 435
            E+P+Y+T+N DIGV++  V     +RR+R   F+NSFNG ++RD GLNT +T+S I D L
Sbjct:  135 EHPMYATSNRDIGVEKSQVKV-ELDRRSRPNTFTNSFNGFRYRDFGLNTAITKSRISDQL 193
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BLAST of mRNA_H-elongata_contig70010.14652.1 vs. uniprot
Match: A0A2D4CFK2_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CFK2_PYTIN)

HSP 1 Score: 64.3 bits (155), Expect = 1.750e-8
Identity = 30/63 (47.62%), Postives = 44/63 (69.84%), Query Frame = 1 
Query:  247 PKKENPLYSTTNNDIGVKRPNVATFTFERRARQQGFSNSFNGLKFRDMGLNTYVTRSNIHDDL 435
            P+ E+PLY+T+  +IGV++  V     ER++R   F+NSFNG ++RD GLNT +T+S I D L
Sbjct:  135 PRNEHPLYATSTREIGVEKAQVKV-EIERKSRPNTFTNSFNGFRYRDFGLNTAITKSRICDHL 196
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BLAST of mRNA_H-elongata_contig70010.14652.1 vs. uniprot
Match: A0A2D4C3E5_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C3E5_PYTIN)

HSP 1 Score: 65.5 bits (158), Expect = 3.880e-8
Identity = 35/87 (40.23%), Postives = 54/87 (62.07%), Query Frame = 1 
Query:  181 LQRRVPEDNGVRDAILSTFKH--NPKKENPLYSTTNNDIGVKRPNVATFTFERRARQQGFSNSFNGLKFRDMGLNTYVTRSNIHDDL 435
            LQ++V E   V+   +   +    P+ E+PLY+T+  +IGV++  V     ER++R   F+NSFNG ++RD GLNT +T+S I D L
Sbjct:  314 LQKQVLEGGRVKIKPVDDTRSISEPRNEHPLYATSTREIGVEKAQVKV-EIERKSRPNTFTNSFNGFRYRDFGLNTAITKSRICDHL 399
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BLAST of mRNA_H-elongata_contig70010.14652.1 vs. uniprot
Match: A0A3F2RIF8_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RIF8_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 1.240e-6
Identity = 28/60 (46.67%), Postives = 41/60 (68.33%), Query Frame = 1 
Query:  256 ENPLYSTTNNDIGVKRPNVATFTFERRARQQGFSNSFNGLKFRDMGLNTYVTRSNIHDDL 435
            E+P+Y+T+N +IG ++  +     ER+ R   F+NSFNG ++RD GLNT VT+S I D L
Sbjct:  136 EHPMYATSNRNIGAEKAQLKV-EVERQGRPNTFTNSFNGFRYRDFGLNTAVTKSRICDQL 194
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BLAST of mRNA_H-elongata_contig70010.14652.1 vs. uniprot
Match: A0A225W4G4_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225W4G4_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 1.780e-6
Identity = 53/153 (34.64%), Postives = 75/153 (49.02%), Query Frame = 1 
Query:   16 IGKGVPPSDSKLA----MVTSQRHSLGQRAREK-----GLGKNPVMYEREEETGVPLR--DATCYDLQRRVPEDNGVR--DAILSTFKHNPKKENPLYSTTNNDIGVKRPNVATFTFERRARQQGFSNSFNGLKFRDMGLNTYVTRSNIHDDL 435
            IG G P S + L       TS     G RA+E+      + K  V  E E+   V +R  D T  +     PED   +  D    T  H+   ++PLY+T+  +IG ++  +     ER+ R   F+NSFNG ++RD GLNT VT+S I D L
Sbjct:   50 IGTGQPHSTNTLTEFMYQTTSGDLGNGVRAQERLRLSQRMDKFTVRKEVEDSGLVTIRHVDVTAPEDCAIRPEDIMPKPIDVKAITEAHS---QHPLYATSYREIGAEKSQLKV-DIERQGRPNTFTNSFNGFRYRDFGLNTAVTKSRICDQL 198
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BLAST of mRNA_H-elongata_contig70010.14652.1 vs. uniprot
Match: D0NC33_PHYIT (Uncharacterized protein n=3 Tax=Phytophthora infestans TaxID=4787 RepID=D0NC33_PHYIT)

HSP 1 Score: 57.4 bits (137), Expect = 4.260e-6
Identity = 38/112 (33.93%), Postives = 56/112 (50.00%), Query Frame = 1 
Query:  118 PVMYEREEETGVPLRDATCYDLQRRVPEDNGVRDAILSTFKHNPK------KENPLYSTTNNDIGVKRPNVATFTFERRARQQGFSNSFNGLKFRDMGLNTYVTRSNIHDDL 435
            P ++   E +GV     T   +    PED  +R   +     + K       ++PLY+T+  DIG ++  +     ER  R   F+NSFNG ++RD GLNT VT+S I D L
Sbjct:   89 PTVHNEVEASGV----VTIRHVDVAAPEDYALRPEEIMPKSIDIKPITQAHSQHPLYATSCRDIGAEKAQLKV-EVERLGRPNTFTNSFNGFRYRDFGLNTAVTKSRICDQL 195
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig70010.14652.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
D8LDP0_ECTSI2.950e-4280.90Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A8J2SKS3_9STRA1.030e-2347.11Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S1UKY3_9STRA2.520e-2240.29Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A7S3M5B3_9STRA2.150e-1448.00Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A8K1CW28_PYTOL8.980e-950.00Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A2D4CFK2_PYTIN1.750e-847.62Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A2D4C3E5_PYTIN3.880e-840.23Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A3F2RIF8_9STRA1.240e-646.67Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]
A0A225W4G4_9STRA1.780e-634.64Uncharacterized protein n=1 Tax=Phytophthora megak... [more]
D0NC33_PHYIT4.260e-633.93Uncharacterized protein n=3 Tax=Phytophthora infes... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig70010contigH-elongata_contig70010:1037..3086 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score61.6
Seed ortholog evalue3.2e-07
Seed eggNOG ortholog115417.EPrPW00000019612
EggNOG free text desc.function. Source PGD
EggNOG OGs1ME7C@121069,2B3AP@1,2S0EH@2759
COG Functional cat.S
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-19_001390.1
Exons3
Model size1051
Cds size399
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig70010.14652.1prot_H-elongata_contig70010.14652.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig70010 1635..3032 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931098.004451-UTR-H-elongata_contig70010:1036..16341622931098.004451-UTR-H-elongata_contig70010:1036..1634Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig70010 1037..1634 -
1691679697.0142846-UTR-H-elongata_contig70010:1036..16341691679697.0142846-UTR-H-elongata_contig70010:1036..1634Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig70010 1037..1634 -
1622931098.0972195-UTR-H-elongata_contig70010:3032..30861622931098.0972195-UTR-H-elongata_contig70010:3032..3086Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig70010 3033..3086 -
1691679697.0618188-UTR-H-elongata_contig70010:3032..30861691679697.0618188-UTR-H-elongata_contig70010:3032..3086Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig70010 3033..3086 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931098.0287743-CDS-H-elongata_contig70010:1634..17311622931098.0287743-CDS-H-elongata_contig70010:1634..1731Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70010 1635..1731 -
1691679697.0263934-CDS-H-elongata_contig70010:1634..17311691679697.0263934-CDS-H-elongata_contig70010:1634..1731Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70010 1635..1731 -
1622931098.0549104-CDS-H-elongata_contig70010:2429..25991622931098.0549104-CDS-H-elongata_contig70010:2429..2599Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70010 2430..2599 -
1691679697.0371964-CDS-H-elongata_contig70010:2429..25991691679697.0371964-CDS-H-elongata_contig70010:2429..2599Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70010 2430..2599 -
1622931098.0805576-CDS-H-elongata_contig70010:2900..30321622931098.0805576-CDS-H-elongata_contig70010:2900..3032Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70010 2901..3032 -
1691679697.048918-CDS-H-elongata_contig70010:2900..30321691679697.048918-CDS-H-elongata_contig70010:2900..3032Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70010 2901..3032 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig70010.14652.1

>prot_H-elongata_contig70010.14652.1 ID=prot_H-elongata_contig70010.14652.1|Name=mRNA_H-elongata_contig70010.14652.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=133bp
MVTSQRHSLGQRAREKGLGKNPVMYEREEETGVPLRDATCYDLQRRVPED
NGVRDAILSTFKHNPKKENPLYSTTNNDIGVKRPNVATFTFERRARQQGF
SNSFNGLKFRDMGLNTYVTRSNIHDDLSPHFM*
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mRNA from alignment at H-elongata_contig70010:1037..3086-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig70010.14652.1 ID=mRNA_H-elongata_contig70010.14652.1|Name=mRNA_H-elongata_contig70010.14652.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2050bp|location=Sequence derived from alignment at H-elongata_contig70010:1037..3086- (Himanthalia elongata Himel1 dioecious)
CAGGAAAGCGAAATAATTGGAAAAGGCGTCCCTCCAAGCGACAGTAAGCT
GGCGATGGTGACTTCACAGCGCCACTCGCTGGGGCAAAGGGCTAGGGAAA
AAGGTCTCGGAAAAAACCCCGTTATGTACGAGAGGGAAGAAGAAACCGGT
GTACCCCTTCGCGACGCAACGTGCTACGATCTCCAAGTGAGGGATCAAGT
GTATCAGTCAATCCTCCTCAGACGGTGTGTGGGTCTCCTCTTTCGCCCAT
CTCTCTTCCGGTGTTCACCGCTTCTCTCGGATTTCATGTTAGAAAGAGGT
TTGTGTCAGTGGTGGTAATTAGTGCGAGGGTCTGAAGCGAAGACTCCGTC
CACGATCAAGCGTTTCAGCTCTATTTAAACGTCGGCATGGATTGACAGGG
AAGAAGCGGTATGACGCATCCCATCCAAATGTATAACTTTCCCCTCTTGC
ACCCCCGCAATGTGCCACAATGACCAACCGGGAAAAGCGTCGGGTTCCAG
AGGACAACGGCGTTCGAGACGCCATCCTCTCCACCTTCAAGCACAACCCC
AAAAAAGAAAACCCGCTGTACTCCACCACGAACAACGACATCGGTGTTAA
GAGACCAAACGTGGCGACGTTCACCTTCGAAAGGCGCGCGCGTCAGCAGG
GGTTCAGGTGAAAAAAAGCTAGGTTGGGCATTGGCGCTGACGCTGGCGCC
TCGAAGGCATCATATCAGCTGATGACTTAAGCCCTTAGATTTTGTTCTGG
GTTTATAAAAGATAGCGCCTGGAAAGGCCATATCGCGGGTGGGTAGAAGT
AAGTGCCAAGGCGAGAGCGAGATATCCCAGGCCGAAAAGTATATCTTTCG
AGGGGGGTGCTGGGAAATGAAGATCTCCTATCTCCCGCTTCAACTATGAG
TGTTCAAAGTCCAGGGGAAACCTGTATGGCATCCGGCGCGTTGCGAATGT
GAGGCTCGCCGTCCCTGTCCCTCATCTCCATTTTTCCGACTGAATAATTC
AAAGATTGGGGGGGGAGGGGGGGTCTAACATCATTGTCCCTGCTTTTCGG
AGGTGAGGGTCCTAATTCATCCCCTTCCAGGGATGGAATCGTCGTATCCC
AGCTTGCAGCACTTCAAATGTGATATATGACTACCACAAAAGAGGGGAAG
GACATGGTTTTTCCCCTGGAGAAGAATTTAACATGTCCCCTCCATGAACC
GGGGGCGATTTCGCAAGTTTGTCTCTCCCCCCTATCATTTGGTTTCTTCA
CTTACTTATCCCCCTTCTTCCCCTTTCTCCCTTTCTTCGGGTTTTTGCTT
GGGGGGGGGGGGGTATCATAATTCATCACCGTGTCTTTCACTTCGACCCG
AGCAGCAACTCTTTCAACGGCCTCAAGTTTCGAGACATGGGACTCAACAC
CTACGTCACTCGCTCCAACATTCACGACGATCTCAGCCCCCACTTCATGT
GAAGCAAGTCGCTGTAATATAGGCTTCAGCGTTAGGGAGACAGACTCGCG
TAAAAGCATTAGGGTGGGTAGTGGTGGGCGTTGCAGCAGCATCATCATAC
GCGTTAAGTATTTTATGAGGTTATTCATTTCCGGCTGCATACTCTGTCGG
GAGGCCGTGGGAATATAGCCGAGATAGTATCATTGTGGTCGATGAAGGGG
CCGGCCGGTCGAGGGAGGCTTTATCATGAAAAAAAAGAAGTCATCGTCGA
GCTTGATGAGGGGAAGGGATCCGCCTCGGTGAAGCAGTCGGAAACGTCTA
TGCGCAATCACATCCTTGCTTCTTCTAACGCCCACTTCCACTCCTGACAT
ATTCTTATTACTATTAACTGTTTTCCGGGGGGTGGGGTGCCCATGATACT
CTCCAGTAGAAATCGAAATCGAAATGTCGGCGCGCGTAGGTGTGCAAAAG
CTAAGCTCCTTGTTTCATGCGAGGTCAATAGAAGGATCCCACCCGTTGGA
CAGAAAGCCTTCGGCGATAGTCGAGAGGGATAGTAACACTGACGGGCAAG
GCATGTAGACAAGGAGCTGACACGTGACCAGTGTCTCTCTGTTCTATAGA
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Coding sequence (CDS) from alignment at H-elongata_contig70010:1037..3086-

>mRNA_H-elongata_contig70010.14652.1 ID=mRNA_H-elongata_contig70010.14652.1|Name=mRNA_H-elongata_contig70010.14652.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=798bp|location=Sequence derived from alignment at H-elongata_contig70010:1037..3086- (Himanthalia elongata Himel1 dioecious)
ATGGTGACTTCACAGCGCCACTCGCTGGGGCAAAGGGCTAGGGAAAAAGG
TCTCGGAAAAAACCCCGTTATGTACGAGAGGGAAGAAGAAACCGGTGTAC
CCCTTCGCGACGCAACGTGCTACGATCTCCAAATGGTGACTTCACAGCGC
CACTCGCTGGGGCAAAGGGCTAGGGAAAAAGGTCTCGGAAAAAACCCCGT
TATGTACGAGAGGGAAGAAGAAACCGGTGTACCCCTTCGCGACGCAACGT
GCTACGATCTCCAACGTCGGGTTCCAGAGGACAACGGCGTTCGAGACGCC
ATCCTCTCCACCTTCAAGCACAACCCCAAAAAAGAAAACCCGCTGTACTC
CACCACGAACAACGACATCGGTGTTAAGAGACCAAACGTGGCGACGTTCA
CCTTCGAAAGGCGCGCGCGTCAGCAGGGGTTCAGCGTCGGGTTCCAGAGG
ACAACGGCGTTCGAGACGCCATCCTCTCCACCTTCAAGCACAACCCCAAA
AAAGAAAACCCGCTGTACTCCACCACGAACAACGACATCGGTGTTAAGAG
ACCAAACGTGGCGACGTTCACCTTCGAAAGGCGCGCGCGTCAGCAGGGGT
TCAGCAACTCTTTCAACGGCCTCAAGTTTCGAGACATGGGACTCAACACC
TACGTCACTCGCTCCAACATTCACGACGATCTCAGCCCCCACTTCATGTG
ACAACTCTTTCAACGGCCTCAAGTTTCGAGACATGGGACTCAACACCTAC
GTCACTCGCTCCAACATTCACGACGATCTCAGCCCCCACTTCATGTGA
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