mRNA_H-elongata_contig70003.14650.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig70003.14650.1
Unique NamemRNA_H-elongata_contig70003.14650.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig70003.14650.1 vs. uniprot
Match: A0A6H5KL37_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL37_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 8.910e-16
Identity = 42/117 (35.90%), Postives = 66/117 (56.41%), Query Frame = 2
Query:    8 FLNVEEEVYIKIDPGYEICDECGVPFAVKFKKHLYSLQQSPKIWFGIMDHHL*NIRFRSLFSAPCVYTFEGNTGFAILPLCVNDVRLVGINKQQLVKLKNILTDRFEMTNFGDVSKV 358
            + ++ E V+++  PG+E+ D+ G    ++ +K LY L QSP  WF  +D  L  I F  L S  CVY ++ +     L L V+D+ L G N + +  +K  LT RF+MT+ G+V  V
Sbjct:  575 YADILENVFVEQPPGFEVKDKDGGDLVMQLQKSLYGLAQSPSNWFHTIDPFLVEIGFVPLKSDTCVYLYDHDDVQVYLTLYVDDLLLAGNNSRAISMIKKKLTQRFKMTDMGEVKLV 691          
BLAST of mRNA_H-elongata_contig70003.14650.1 vs. uniprot
Match: A0A6H5K066_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K066_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 4.870e-15
Identity = 42/120 (35.00%), Postives = 66/120 (55.00%), Query Frame = 2
Query:    8 FLNV--EEEVYIKIDPGYEICDEC-GVPFAVKFKKHLYSLQQSPKIWFGIMDHHL*NIRFRSLFSAPCVYTFEGNTGFAILPLCVNDVRLVGINKQQLVKLKNILTDRFEMTNFGDVSKV 358
            FLN   + +VY++  PG    +   G P   K ++ LY L QSP +W   +D  L    ++   S PCVY +       IL + V+D+ ++G ++Q + + K  LTDRFEMT+ G+V +V
Sbjct:   92 FLNALCDRDVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSPALWNDTLDESLTVFGWKRTQSDPCVYVYTSGNIIVILTVYVDDILIIGGDQQLVDQKKKELTDRFEMTDMGEVKRV 211          
BLAST of mRNA_H-elongata_contig70003.14650.1 vs. uniprot
Match: A0A6H5KTY2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTY2_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 7.470e-15
Identity = 41/120 (34.17%), Postives = 65/120 (54.17%), Query Frame = 2
Query:    8 FLNV--EEEVYIKIDPGYEICDEC-GVPFAVKFKKHLYSLQQSPKIWFGIMDHHL*NIRFRSLFSAPCVYTFEGNTGFAILPLCVNDVRLVGINKQQLVKLKNILTDRFEMTNFGDVSKV 358
            FLN   + +VY++  PG    +   G P   K ++ LY L QSP +W   +D  L    ++   S PCVY +       IL + V+D+ + G ++Q + + K  LTDRFEMT+ G+V ++
Sbjct:  300 FLNALCDRDVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSPALWNDTLDESLTVFGWKRTQSDPCVYVYTSGNSIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRI 419          
BLAST of mRNA_H-elongata_contig70003.14650.1 vs. uniprot
Match: A0A6H5KE92_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE92_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 2.720e-14
Identity = 41/120 (34.17%), Postives = 65/120 (54.17%), Query Frame = 2
Query:    8 FLNV--EEEVYIKIDPGYEICDEC-GVPFAVKFKKHLYSLQQSPKIWFGIMDHHL*NIRFRSLFSAPCVYTFEGNTGFAILPLCVNDVRLVGINKQQLVKLKNILTDRFEMTNFGDVSKV 358
            FLN   + +VY++  PG    +   G P   K ++ LY L QSP +W   +D  L    ++   S PCVY +       IL + V+D+ + G ++Q + + K  LTDRFEMT+ G+V ++
Sbjct:  456 FLNALCDRDVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSPALWNDTLDESLTVFGWKRTQSDPCVYVYTSGNIIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRI 575          
BLAST of mRNA_H-elongata_contig70003.14650.1 vs. uniprot
Match: A0A6H5K1R7_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1R7_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 3.710e-14
Identity = 40/120 (33.33%), Postives = 65/120 (54.17%), Query Frame = 2
Query:    8 FLNV--EEEVYIKIDPGYEICDEC-GVPFAVKFKKHLYSLQQSPKIWFGIMDHHL*NIRFRSLFSAPCVYTFEGNTGFAILPLCVNDVRLVGINKQQLVKLKNILTDRFEMTNFGDVSKV 358
            FLN   + +VY++  PG    +   G P   K ++ LY L QSP +W   +D  +    ++   S PCVY +       IL + V+D+ + G ++Q + + K  LTDRFEMT+ G+V ++
Sbjct:  681 FLNALCDRDVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSPALWNDTLDESITAFGWKRTQSDPCVYAYTSGNIIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRI 800          
BLAST of mRNA_H-elongata_contig70003.14650.1 vs. uniprot
Match: A0A6H5KS50_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS50_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 6.760e-14
Identity = 44/122 (36.07%), Postives = 68/122 (55.74%), Query Frame = 2
Query:    8 FLNV--EEEVYIKIDPGYEICDEC-GVPFAVKFKKHLYSLQQSPKIWFGIMDHHL*NIRFRSLFSAPCVYTF--EGNTGFAILPLCVNDVRLVGINKQQLVKLKNILTDRFEMTNFGDVSKV 358
            FLN   + +VY++  PG    +   G P   K ++ LY L QSP +W   +D  L    ++   S PCVY     GNT   IL +CV+D+ + G ++Q + + K  LT+RFEMT+ G+V ++
Sbjct:  399 FLNALCDRDVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSPALWNDTLDESLTVFGWKRTQSDPCVYVCLTSGNT-IVILTVCVDDILITGGDQQLVDQPKKELTNRFEMTDMGEVKRI 519          
BLAST of mRNA_H-elongata_contig70003.14650.1 vs. uniprot
Match: A0A6H5KQD0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQD0_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 8.760e-14
Identity = 41/120 (34.17%), Postives = 64/120 (53.33%), Query Frame = 2
Query:    8 FLNV--EEEVYIKIDPGYEICDEC-GVPFAVKFKKHLYSLQQSPKIWFGIMDHHL*NIRFRSLFSAPCVYTFEGNTGFAILPLCVNDVRLVGINKQQLVKLKNILTDRFEMTNFGDVSKV 358
            FLN   +  VY++  PG    +   G P   K ++ LY L QSP +W   +D  L    ++   S PCVY +       IL + V+D+ + G ++Q + + K  LTDRFEMT+ G+V ++
Sbjct:   92 FLNALCDRYVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSPALWNDTLDESLTVFGWKRTQSDPCVYVYTSGNIIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRI 211          
BLAST of mRNA_H-elongata_contig70003.14650.1 vs. uniprot
Match: A0A6H5JF89_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF89_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 2.350e-13
Identity = 40/120 (33.33%), Postives = 65/120 (54.17%), Query Frame = 2
Query:    8 FLNV--EEEVYIKIDPGYEICDEC-GVPFAVKFKKHLYSLQQSPKIWFGIMDHHL*NIRFRSLFSAPCVYTFEGNTGFAILPLCVNDVRLVGINKQQLVKLKNILTDRFEMTNFGDVSKV 358
            FLN   + +VY++  PG    +   G P   K ++ LY L QS  +W   +D  L  + ++   S PCVY +       IL + V+D+ + G ++Q + + K  LTDRFEMT+ G+V ++
Sbjct:  300 FLNALCDRDVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSHALWNDTLDESLTVLGWKRTQSDPCVYVYTSGNIIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRI 419          
BLAST of mRNA_H-elongata_contig70003.14650.1 vs. uniprot
Match: A0A6H5JDU8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDU8_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 3.120e-13
Identity = 42/120 (35.00%), Postives = 63/120 (52.50%), Query Frame = 2
Query:    8 FLNV--EEEVYIKIDPGYEICDEC-GVPFAVKFKKHLYSLQQSPKIWFGIMDHHL*NIRFRSLFSAPCVYTFEGNTGFAILPLCVNDVRLVGINKQQLVKLKNILTDRFEMTNFGDVSKV 358
            FLN   + +VY++  PG    +   G P   K ++ LY L QSP +W   ++  L    ++     PCVY +       IL + V+D+ + G   QQLV  K  LTDRFEMT+ G+V ++
Sbjct:  193 FLNALCDRDVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSPALWNDTLNESLKVFGWKRTQYDPCVYMYTSGNIIVILTVYVDDILITG-GDQQLVDQKKELTDRFEMTDMGEVKRI 311          
BLAST of mRNA_H-elongata_contig70003.14650.1 vs. uniprot
Match: A0A6A3CV50_HIBSY (Chitinase-like protein 1 n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3CV50_HIBSY)

HSP 1 Score: 74.3 bits (181), Expect = 4.300e-13
Identity = 40/116 (34.48%), Postives = 61/116 (52.59%), Query Frame = 2
Query:   14 NVEEEVYIKIDPGYEICDECGVPFAVKFKKHLYSLQQSPKIWFGIMDHHL*NIRFRSLFSAPCVY-TFEGNTGFAILPLCVNDVRLVGINKQQLVKLKNILTDRFEMTNFGDVSKV 358
            N+EEE+Y+    G+E   E       +  K LY L+Q+P+ W+   D  +  + +  L + PC Y    G+  F IL   V+D+ +VG NK  + +LK  L   FEM NFG  +K+
Sbjct:  105 NLEEEIYMLQPEGFE---EKEKNLVCRLNKSLYGLKQAPRCWYNRFDSFIMCLGYNRLNADPCAYFKRSGDNDFVILLFYVDDILIVGPNKDHIEELKAQLAREFEMKNFGSANKI 217          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig70003.14650.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KL37_9PHAE8.910e-1635.90Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K066_9PHAE4.870e-1535.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KTY2_9PHAE7.470e-1534.17Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KE92_9PHAE2.720e-1434.17Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K1R7_9PHAE3.710e-1433.33Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5KS50_9PHAE6.760e-1436.07Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KQD0_9PHAE8.760e-1434.17Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JF89_9PHAE2.350e-1333.33Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JDU8_9PHAE3.120e-1335.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6A3CV50_HIBSY4.300e-1334.48Chitinase-like protein 1 n=1 Tax=Hibiscus syriacus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig70003contigH-elongata_contig70003:1872..2232 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size363
Cds size360
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931097.7281528-CDS-H-elongata_contig70003:1872..22321622931097.7281528-CDS-H-elongata_contig70003:1872..2232Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70003 1873..2232 -
1691679696.9219751-CDS-H-elongata_contig70003:1872..22321691679696.9219751-CDS-H-elongata_contig70003:1872..2232Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70003 1873..2232 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig70003.14650.1prot_H-elongata_contig70003.14650.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig70003 1873..2232 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig70003.14650.1

>prot_H-elongata_contig70003.14650.1 ID=prot_H-elongata_contig70003.14650.1|Name=mRNA_H-elongata_contig70003.14650.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=120bp
HELPQCRGGGLHQDRSRIRDLRRVWSSLCREIQETPLQSPTEPKDLVWYY
GPPPLKHQVSFTLFGSVRLHIRGQYRVRYPAALRERRSSSRHKQAAACQA
QEYTHGSFRDDELWGRLEST
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mRNA from alignment at H-elongata_contig70003:1872..2232-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig70003.14650.1 ID=mRNA_H-elongata_contig70003.14650.1|Name=mRNA_H-elongata_contig70003.14650.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=361bp|location=Sequence derived from alignment at H-elongata_contig70003:1872..2232- (Himanthalia elongata Himel1 dioecious)
CATGAACTTCCTCAATGTCGAGGAGGAGGTCTACATCAAGATAGATCCCG GATACGAGATCTGCGACGAGTGTGGAGTTCCCTTTGCCGTGAAATTCAAG AAACACCTCTACAGTCTCCAACAGAGCCCAAAGATCTGGTTTGGTATTAT GGACCACCACCTCTAAAACATCAGGTTTCGTTCACTCTTTTCGGCTCCGT GCGTCTACACATTCGAGGGCAATACCGGGTTCGCTATCCTGCCGCTCTGC GTGAACGACGTTCGTCTAGTCGGCATAAACAAGCAGCAGCTTGTCAAGCT CAAGAATATACTCACGGATCGTTTCGAGATGACGAACTTTGGGGACGTCT CGAAAGTACTC
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Coding sequence (CDS) from alignment at H-elongata_contig70003:1872..2232-

>mRNA_H-elongata_contig70003.14650.1 ID=mRNA_H-elongata_contig70003.14650.1|Name=mRNA_H-elongata_contig70003.14650.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=720bp|location=Sequence derived from alignment at H-elongata_contig70003:1872..2232- (Himanthalia elongata Himel1 dioecious)
CATGAACTTCCTCAATGTCGAGGAGGAGGTCTACATCAAGATAGATCCCG
GATACGAGATCTGCGACGAGTGTGGAGTTCCCTTTGCCGTGAAATTCAAG
AAACACCTCTACAGTCTCCAACAGAGCCCAAAGATCTGGTTTGGTATTAT
GGACCACCACCTCTAAAACATCAGGTTTCGTTCACTCTTTTCGGCTCCGT
GCGTCTACACATTCGAGGGCAATACCGGGTTCGCTATCCTGCCGCTCTGC
GTGAACGACGTTCGTCTAGTCGGCATAAACAAGCAGCAGCTTGTCAAGCT
CAAGAATATACTCACGGATCGTTTCGAGATGACGAACTTTGGGGACGTCT
CGAAAGTACTCATGAACTTCCTCAATGTCGAGGAGGAGGTCTACATCAAG
ATAGATCCCGGATACGAGATCTGCGACGAGTGTGGAGTTCCCTTTGCCGT
GAAATTCAAGAAACACCTCTACAGTCTCCAACAGAGCCCAAAGATCTGGT
TTGGTATTATGGACCACCACCTCTAAAACATCAGGTTTCGTTCACTCTTT
TCGGCTCCGTGCGTCTACACATTCGAGGGCAATACCGGGTTCGCTATCCT
GCCGCTCTGCGTGAACGACGTTCGTCTAGTCGGCATAAACAAGCAGCAGC
TTGTCAAGCTCAAGAATATACTCACGGATCGTTTCGAGATGACGAACTTT
GGGGACGTCTCGAAAGTACT
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