mRNA_H-elongata_contig69995.14648.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig69995.14648.1
Unique NamemRNA_H-elongata_contig69995.14648.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig69995.14648.1 vs. uniprot
Match: D7FS72_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FS72_ECTSI)

HSP 1 Score: 156 bits (395), Expect = 1.330e-47
Identity = 77/104 (74.04%), Postives = 83/104 (79.81%), Query Frame = 1
Query:    1 MEEEPQAVARRSNVNLTPYPHVSKDDRSDPVAWKNSREQFMRERLIAKERVKLLRQQVIACYRKEGVNHYVNCKHLTTKYLKITQDHNFGMLKPPSTGVEASEE 312
            M +E +  AR S+  L PYPHV K DRSDPVAW NSREQFMRE LIAKERVKLLRQ+VIACYRKEGVNHYVNCKHLTTKYL+I QD  FG LKPP  G +  EE
Sbjct:    1 MADEAKLGARLSDATLQPYPHVPKSDRSDPVAWANSREQFMREHLIAKERVKLLRQEVIACYRKEGVNHYVNCKHLTTKYLEIIQDKTFGRLKPPGAGADGDEE 104          
BLAST of mRNA_H-elongata_contig69995.14648.1 vs. uniprot
Match: A0A6U1N2S4_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A6U1N2S4_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 7.730e-21
Identity = 45/87 (51.72%), Postives = 59/87 (67.82%), Query Frame = 1
Query:   40 VNLTPYPHVSKDDRSD------PVAWKNSREQFMRERLIAKERVKLLRQQVIACYRKEGVNHYVNCKHLTTKYLKITQDHNFGMLKP 282
            V L PYPHV  D R+D      PV +  +REQ  RER+IA+E VK++R+QV  CY++EGVNHY NCKHLT +Y  +     FG+L+P
Sbjct:   14 VQLKPYPHVPSDLRADGRRHDDPVGYALAREQRGRERIIAEETVKIVREQVAQCYQREGVNHYQNCKHLTKQYYDLITAPGFGILQP 100          
BLAST of mRNA_H-elongata_contig69995.14648.1 vs. uniprot
Match: A0A7S2IBJ5_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2IBJ5_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 2.690e-17
Identity = 43/96 (44.79%), Postives = 58/96 (60.42%), Query Frame = 1
Query:   34 SNVNLTPYPHVSKDDR----SDPVAWKNSREQFMRERLIAKERVKLLRQQVIACYRKEGVNHYVNCKHLTTKYLKITQDHNFGMLKPPSTGVEASE 309
            S+V L PYPH  +       +DPV +  + EQ  RER IA E V++LR+ VIACYRKEGVNHY NCK +T  Y  +   ++ G ++P  +  E  E
Sbjct:   11 SDVKLRPYPHEERGKEFGRANDPVKFLQAAEQRARERQIAYETVRILRKDVIACYRKEGVNHYDNCKEVTKAYYDVIIKNDVGQVQPDWSNPEMKE 106          
BLAST of mRNA_H-elongata_contig69995.14648.1 vs. uniprot
Match: A0A7S2UB87_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UB87_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 1.080e-16
Identity = 48/107 (44.86%), Postives = 60/107 (56.07%), Query Frame = 1
Query:    1 MEEEPQAVARRSNVNLTPYPHVSKDDR----SDPVAWKNSREQFMRERLIAKERVKLLRQQVIACYRKEGVNHYVNCKHLTTKYLKITQDHNFGMLKPPSTGVEASE 309
            M +EP+ +A      L PYPH  +        DPV +  + EQ  RER +A E V+LLRQ VI C+RKEGVNHY NCK  T KY KI    + G L+P     E +E
Sbjct:    4 MYDEPKVMAG----TLPPYPHEERGSEFGRAKDPVKFLQAVEQRARERQVAYETVRLLRQDVITCFRKEGVNHYENCKEETEKYYKIIIKKDVGQLQPNWENKEKNE 106          
BLAST of mRNA_H-elongata_contig69995.14648.1 vs. uniprot
Match: A0A7S2KTT3_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KTT3_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 7.290e-16
Identity = 40/84 (47.62%), Postives = 54/84 (64.29%), Query Frame = 1
Query:   46 LTPYPHV--SKDDRS---DPVAWKNSREQFMRERLIAKERVKLLRQQVIACYRKEGVNHYVNCKHLTTKYLKITQDHNFGMLKP 282
            +TP+P    ++D+R    DPV +    +Q  RE+ +A E VKL RQ VI CYRKEGVNHY NCK +  KY+ + Q  ++G LKP
Sbjct:   15 ITPFPASDGARDERGRAMDPVGYLEEMQQRAREKAVAIEAVKLARQDVIQCYRKEGVNHYENCKEVVKKYVNMIQAPDYGALKP 98          
BLAST of mRNA_H-elongata_contig69995.14648.1 vs. uniprot
Match: A0A7S4NIE6_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4NIE6_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 2.480e-15
Identity = 44/87 (50.57%), Postives = 51/87 (58.62%), Query Frame = 1
Query:   34 SNVNLTPYPHVS---KDDRS-DPVAWKNSREQFMRERLIAKERVKLLRQQVIACYRKEGVNHYVNCKHLTTKYLKITQDHNFGMLKP 282
            S V LTPYPH     KD  + DPV +  + EQ  RER IA E V+LLRQ VI CYRKEGVNHY NCK +   Y       + G + P
Sbjct:   11 SAVKLTPYPHEELGRKDGPAKDPVKFLQAAEQRARERQIAYETVRLLRQDVITCYRKEGVNHYENCKEVCETYYNTIIKKDVGQVHP 97          
BLAST of mRNA_H-elongata_contig69995.14648.1 vs. uniprot
Match: B7FYP7_PHATC (Predicted protein n=3 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FYP7_PHATC)

HSP 1 Score: 74.7 bits (182), Expect = 3.430e-15
Identity = 42/83 (50.60%), Postives = 53/83 (63.86%), Query Frame = 1
Query:   43 NLTPYPH--VSKDDRS-DPVAWKNSREQFMRERLIAKERVKLLRQQVIACYRKEGVNHYVNCKHLTTKYLKITQDHNFGMLKP 282
            NL+PYPH  +++  R+ DPVA+  + EQ  RER +A E VKLLRQ+VI CYRKEGVNHY NC+        I    + G L P
Sbjct:   14 NLSPYPHNEITEPGRAKDPVAYLLATEQRARERQVAYETVKLLRQRVIHCYRKEGVNHYENCRQEAQDLFDIITKKDLGQLHP 96          
BLAST of mRNA_H-elongata_contig69995.14648.1 vs. uniprot
Match: A0A6T5S9L8_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A6T5S9L8_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 2.050e-14
Identity = 39/85 (45.88%), Postives = 49/85 (57.65%), Query Frame = 1
Query:   43 NLTPYPHVSKDD-----RSDPVAWKNSREQFMRERLIAKERVKLLRQQVIACYRKEGVNHYVNCKHLTTKYLKITQDHNFGMLKP 282
            +L PYPH    +       +PV +  S EQ  RER +A E V+LLR+ VI CYRKEGVNHY NCK    KY K+    + G + P
Sbjct:   14 SLPPYPHEDHSEDGLGRAKNPVKYLQSIEQRARERQVAYETVRLLRRDVIECYRKEGVNHYENCKAPVEKYAKVVLKRDVGQVNP 98          
BLAST of mRNA_H-elongata_contig69995.14648.1 vs. uniprot
Match: A0A7S2RVV4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RVV4_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 2.760e-14
Identity = 38/90 (42.22%), Postives = 52/90 (57.78%), Query Frame = 1
Query:   37 NVNLTPYPHVSKDD--------RSDPVAWKNSREQFMRERLIAKERVKLLRQQVIACYRKEGVNHYVNCKHLTTKYLKITQDHNFGMLKP 282
            + +L PYPH              S+PV +  + EQ  RER +A E V+LLR+ VI CYRKEGVNHY NC+ +  KY K+    + G ++P
Sbjct:   12 DFSLPPYPHEEHTPGVGDGIGRASNPVKYLQAVEQRARERQVAVETVRLLRRDVIECYRKEGVNHYENCREVVDKYAKVVLKRSVGQVQP 101          
BLAST of mRNA_H-elongata_contig69995.14648.1 vs. uniprot
Match: A0A1Z5JZ26_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JZ26_FISSO)

HSP 1 Score: 68.9 bits (167), Expect = 5.400e-13
Identity = 40/86 (46.51%), Postives = 47/86 (54.65%), Query Frame = 1
Query:   46 LTPYPH----VSKDDRSDPVAWKNSREQFMRERLIAKERVKLLRQQVIACYRKEGVNHYVNCKHLTTKYLKITQDHNFGMLKPPST 291
            L  Y H    V +    DPVA+  S EQ  RER +A E VKLLRQ+VI CYRKEGVNHY  CK        +    + G L+P  T
Sbjct:   15 LNAYQHEDRGVERGRAKDPVAFLQSVEQRARERQVAYETVKLLRQRVIHCYRKEGVNHYEKCKKEAQDLYNVISQKDLGQLQPNQT 100          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig69995.14648.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FS72_ECTSI1.330e-4774.04Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6U1N2S4_9STRA7.730e-2151.72Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S2IBJ5_9STRA2.690e-1744.79Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A7S2UB87_9STRA1.080e-1644.86Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S2KTT3_9STRA7.290e-1647.62Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S4NIE6_9STRA2.480e-1550.57Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
B7FYP7_PHATC3.430e-1550.60Predicted protein n=3 Tax=Phaeodactylum tricornutu... [more]
A0A6T5S9L8_9STRA2.050e-1445.88Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A7S2RVV4_9STRA2.760e-1442.22Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A1Z5JZ26_FISSO5.400e-1346.51Uncharacterized protein n=1 Tax=Fistulifera solari... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig69995contigH-elongata_contig69995:706..1032 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score159.8
Seed ortholog evalue7e-37
Seed eggNOG ortholog2880.D7FS72
Preferred nameNDUFB10
KEGG koko:K03966
KEGG TC3.D.1.6
KEGG Pathwayko00190,ko01100,ko04714,ko04723,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map04714,map04723,map04932,map05010,map05012,map05016
KEGG ModuleM00147
GOsGO:0003674,GO:0003824,GO:0003954,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005747,GO:0006091,GO:0006119,GO:0006120,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006996,GO:0007005,GO:0008137,GO:0008150,GO:0008152,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009853,GO:0009987,GO:0010257,GO:0015980,GO:0016020,GO:0016043,GO:0016310,GO:0016491,GO:0016651,GO:0016655,GO:0017144,GO:0019637,GO:0019693,GO:0019866,GO:0022607,GO:0022900,GO:0022904,GO:0030964,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0032981,GO:0032991,GO:0033108,GO:0034622,GO:0034641,GO:0042773,GO:0042775,GO:0043094,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045271,GO:0045333,GO:0046034,GO:0046483,GO:0050136,GO:0055086,GO:0055114,GO:0065003,GO:0070469,GO:0071704,GO:0071840,GO:0072521,GO:0098796,GO:0098798,GO:0098800,GO:0098803,GO:1901135,GO:1901360,GO:1901564,GO:1902494,GO:1990204
EggNOG free text desc.mitochondrial respiratory chain complex I assembly
EggNOG OGsKOG4009@1,KOG4009@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionNADH-ubiquinone oxidoreductase, subunit 10
Ec32 orthologEc-01_000800.1
Exons1
Model size327
Cds size327
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931097.437301-CDS-H-elongata_contig69995:705..10321622931097.437301-CDS-H-elongata_contig69995:705..1032Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69995 706..1032 -
1691679696.7656667-CDS-H-elongata_contig69995:705..10321691679696.7656667-CDS-H-elongata_contig69995:705..1032Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69995 706..1032 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig69995.14648.1prot_H-elongata_contig69995.14648.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig69995 706..1032 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig69995.14648.1

>prot_H-elongata_contig69995.14648.1 ID=prot_H-elongata_contig69995.14648.1|Name=mRNA_H-elongata_contig69995.14648.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=109bp
MEEEPQAVARRSNVNLTPYPHVSKDDRSDPVAWKNSREQFMRERLIAKER
VKLLRQQVIACYRKEGVNHYVNCKHLTTKYLKITQDHNFGMLKPPSTGVE
ASEEDIEQ*
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mRNA from alignment at H-elongata_contig69995:706..1032-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig69995.14648.1 ID=mRNA_H-elongata_contig69995.14648.1|Name=mRNA_H-elongata_contig69995.14648.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=327bp|location=Sequence derived from alignment at H-elongata_contig69995:706..1032- (Himanthalia elongata Himel1 dioecious)
ATGGAGGAGGAGCCGCAGGCGGTGGCAAGACGATCGAATGTGAACCTCAC GCCCTACCCACACGTGAGTAAAGATGACCGGAGTGACCCGGTTGCGTGGA AGAACTCAAGAGAGCAGTTCATGCGCGAGCGCTTGATCGCAAAAGAGCGT GTGAAGCTGTTGCGGCAACAGGTGATCGCGTGCTACCGTAAGGAGGGAGT GAACCACTACGTGAACTGTAAACATCTCACTACGAAGTATCTCAAGATCA CCCAAGACCACAACTTCGGAATGCTAAAACCTCCCAGCACGGGAGTCGAG GCTTCGGAAGAGGATATTGAGCAGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig69995:706..1032-

>mRNA_H-elongata_contig69995.14648.1 ID=mRNA_H-elongata_contig69995.14648.1|Name=mRNA_H-elongata_contig69995.14648.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=654bp|location=Sequence derived from alignment at H-elongata_contig69995:706..1032- (Himanthalia elongata Himel1 dioecious)
ATGGAGGAGGAGCCGCAGGCGGTGGCAAGACGATCGAATGTGAACCTCAC
GCCCTACCCACACGTGAGTAAAGATGACCGGAGTGACCCGGTTGCGTGGA
AGAACTCAAGAGAGCAGTTCATGCGCGAGCGCTTGATCGCAAAAGAGCGT
GTGAAGCTGTTGCGGCAACAGGTGATCGCGTGCTACCGTAAGGAGGGAGT
GAACCACTACGTGAACTGTAAACATCTCACTACGAAGTATCTCAAGATCA
CCCAAGACCACAACTTCGGAATGCTAAAACCTCCCAGCACGGGAGTCGAG
GCTTCGGAAGAGGATATTGAGCAGTGAATGGAGGAGGAGCCGCAGGCGGT
GGCAAGACGATCGAATGTGAACCTCACGCCCTACCCACACGTGAGTAAAG
ATGACCGGAGTGACCCGGTTGCGTGGAAGAACTCAAGAGAGCAGTTCATG
CGCGAGCGCTTGATCGCAAAAGAGCGTGTGAAGCTGTTGCGGCAACAGGT
GATCGCGTGCTACCGTAAGGAGGGAGTGAACCACTACGTGAACTGTAAAC
ATCTCACTACGAAGTATCTCAAGATCACCCAAGACCACAACTTCGGAATG
CTAAAACCTCCCAGCACGGGAGTCGAGGCTTCGGAAGAGGATATTGAGCA
GTGA
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