mRNA_H-elongata_contig69993.14646.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig69993.14646.1
Unique NamemRNA_H-elongata_contig69993.14646.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig69993.14646.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig69993contigH-elongata_contig69993:1229..2715 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size395
Cds size249
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig69993.14646.1prot_H-elongata_contig69993.14646.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig69993 1373..2715 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931097.331473-UTR-H-elongata_contig69993:1228..13721622931097.331473-UTR-H-elongata_contig69993:1228..1372Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig69993 1229..1372 +
1691679696.7261462-UTR-H-elongata_contig69993:1228..13721691679696.7261462-UTR-H-elongata_contig69993:1228..1372Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig69993 1229..1372 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931097.344486-CDS-H-elongata_contig69993:1372..15941622931097.344486-CDS-H-elongata_contig69993:1372..1594Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69993 1373..1594 +
1691679696.7339087-CDS-H-elongata_contig69993:1372..15941691679696.7339087-CDS-H-elongata_contig69993:1372..1594Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69993 1373..1594 +
1622931097.3560534-CDS-H-elongata_contig69993:2688..27151622931097.3560534-CDS-H-elongata_contig69993:2688..2715Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69993 2689..2715 +
1691679696.7419975-CDS-H-elongata_contig69993:2688..27151691679696.7419975-CDS-H-elongata_contig69993:2688..2715Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69993 2689..2715 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig69993.14646.1

>prot_H-elongata_contig69993.14646.1 ID=prot_H-elongata_contig69993.14646.1|Name=mRNA_H-elongata_contig69993.14646.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=83bp
MNPYARTFEGSITSTATPACHGEVKPEPEEGQIGAWEDGSGISQYWDPHG
QHDAGYATPSFGFHSQAYGYGQQTNGGGVIVAG
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mRNA from alignment at H-elongata_contig69993:1229..2715+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig69993.14646.1 ID=mRNA_H-elongata_contig69993.14646.1|Name=mRNA_H-elongata_contig69993.14646.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1487bp|location=Sequence derived from alignment at H-elongata_contig69993:1229..2715+ (Himanthalia elongata Himel1 dioecious)
GCTTGGTACCGATCGCAGCTATTCCGACCACAAGGGAGTGTATGTGGAAC
GGCGTGAGGTTTGGAATTTTCTTGGTGAAAGTCGAGAGGAGTGAATGCGT
TAGTTTCCGTCTGTTTTTGCTTTGTACAGAGCTGGACGTGGGCGATGAAC
CCTTACGCGCGGACGTTTGAAGGAAGTATCACGTCAACTGCAACCCCCGC
CTGCCATGGAGAGGTGAAACCAGAGCCGGAGGAGGGCCAGATAGGAGCGT
GGGAAGACGGTAGTGGTATTTCTCAGTACTGGGATCCACACGGGCAGCAT
GACGCCGGCTACGCGACCCCAAGTTTTGGTTTTCATTCCCAGGCATATGG
CTACGGTCAACAAACAGTGAGCAAACATGCTTCCCCTTTTCGGATGTCGT
TGTCTTCTAATTTGTTCTAAACAACAGCAGTTGTACACGATGACTAAGGT
ACCGGCAGTCGTAGTCGGCGGCGGTACAGTATCGTGCTGATACTATGCTT
GGAACAGGAGAGGCGTGCGGAATCCAGACTGGTAAAGATGGAGTAAGTGG
GATCGTGGAGCCCTCCTACCGCTCGATGTGATTGTTCCAAAAGGACACAG
CGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTATTAAGTTGCACATAACGGCGCAATCCGACCCTCTCAATTCTAGT
AATTCTATGTTACTCGCATCCGTCCTCCCAATTGGGGATCAATTATATTT
GCTACGAAAAACTATGATCAGACGCGACAAAGGGGACGTGTGTGTGCGTG
TGGTCATCATATATAGAAGAATATTGATCAACCGGATATCGTTGCCAATC
CTACTCGTGGTCAGCTGAATAGGGCGGGGCCGTGACGGTATTATAAACGC
CAACGCCCTGGGGCGTTGCGCCCAGAGGTGGGACAGGAGGGAGAGTTGTA
GCGGTAGTCCGGCGCGGTTGCGTAAGCTACGCGAGTAGGATAAACCAATC
TAACGTCTTCAGAGATAGCTCCCCATTAAGGGGGAGTATTCGCAAACCAG
CGTGGCGCCCCCTTACCTGTCATGCAGGTTTGCGCCGTCTAATGCAAATT
GATATAAAAGGTAAAATGAATTTTCCCTCTCCCCATTCGCGCCTGATAAT
TTGGTCTCGCGAGATGGTTTCGGTCGTACTGTCACGCGTGTCCAGGCCCA
AGCTTTCTTTCCGCGCCCTGTCGCAAGTCACATGCGGTATTCGCCTTTAG
ATTGCACCAATCGTGAACGGTAGTAGCACTGCTGAAACAGCAGCATGAAC
CATCCCCGTAAACATGTCCAAGTGGCACAACTCAATTCGACAAGGCCATT
CCGTCAGCAGTCCAAAGCACGTAGTGGTATACACAACGCCCACGCCGTCC
TCGTCCCTTCAGCCTGTCATCCTAACAGCCCTCAACTTCTGTACTCGTGA
CCTATAACAGAACGGCGGAGGCGTCATCGTCGCGGGG
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Coding sequence (CDS) from alignment at H-elongata_contig69993:1229..2715+

>mRNA_H-elongata_contig69993.14646.1 ID=mRNA_H-elongata_contig69993.14646.1|Name=mRNA_H-elongata_contig69993.14646.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=498bp|location=Sequence derived from alignment at H-elongata_contig69993:1229..2715+ (Himanthalia elongata Himel1 dioecious)
ATGAACCCTTACGCGCGGACGTTTGAAGGAAGTATCACGTCAACTGCAAC
CCCCGCCTGCCATGGAGAGGTGAAACCAGAGCCGGAGGAGGGCCAGATAG
GAGCGTGGGAAGACGGTAGTGGTATTTCTCAGTACTGGGATCCACACGGG
CAGCATGACGCCGGCTACGCGACCCCAAGTTTTGGTTTTCATTCCCAGGC
ATATGGCTACGGTCAACAAACAATGAACCCTTACGCGCGGACGTTTGAAG
GAAGTATCACGTCAACTGCAACCCCCGCCTGCCATGGAGAGGTGAAACCA
GAGCCGGAGGAGGGCCAGATAGGAGCGTGGGAAGACGGTAGTGGTATTTC
TCAGTACTGGGATCCACACGGGCAGCATGACGCCGGCTACGCGACCCCAA
GTTTTGGTTTTCATTCCCAGGCATATGGCTACGGTCAACAAACAAACGGC
GGAGGCGTCATCGTCGCGGGGAACGGCGGAGGCGTCATCGTCGCGGGG
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