mRNA_H-elongata_contig6997.14643.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig6997.14643.1
Unique NamemRNA_H-elongata_contig6997.14643.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig6997.14643.1 vs. uniprot
Match: D7FPE0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPE0_ECTSI)

HSP 1 Score: 266 bits (679), Expect = 4.860e-88
Identity = 129/182 (70.88%), Postives = 151/182 (82.97%), Query Frame = 1 
Query:    1 VFTGAFFICALVVASIDNAGFDVVLTGLILCVWELGAMWLLKKGPHETSLGFLIGVTIVLNMITLMTAIYWGQLANCETEYDGDYDQYSCSNRSAMRGVAAFASIIWVLQLPFIFILIQRRGVLTREDFDAAGGSYGDYGDGAY-------DRWVRPPADEHLGAAEGLGATVTPVPETSDL 525
            VFT AFFICALVVASIDNAGFDVVLTGL+LCVWE+GAMWLLK+GPH+TSLGFLIGVT+VLN+ITLMTAIYWGQLA C+++YDGDYDQYSCSN+SAMRGVAAFASIIWVLQLPFI++L+QRRGVLTRED+  +GG Y DY D A+         W +PP D+       +  + +  PET+DL
Sbjct:   39 VFTAAFFICALVVASIDNAGFDVVLTGLLLCVWEVGAMWLLKRGPHDTSLGFLIGVTLVLNVITLMTAIYWGQLAGCDSDYDGDYDQYSCSNKSAMRGVAAFASIIWVLQLPFIYLLVQRRGVLTREDYATSGGRYADYDDPAFAPGERDSGGWGKPPVDDGSPRVGAVVGSSSGTPETTDL 220
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BLAST of mRNA_H-elongata_contig6997.14643.1 vs. uniprot
Match: A0A835Z3N9_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3N9_9STRA)

HSP 1 Score: 121 bits (304), Expect = 4.110e-32
Identity = 61/124 (49.19%), Postives = 83/124 (66.94%), Query Frame = 1 
Query:    7 TGAFFICALVVASIDNAGFDVVLTGLILCVWELGAMWLLKKGPHETSLGFLIGVTIVLNMITLMTAIYWGQLANCETEYDGDYD--QYSCSNRSAMRGVAAFASIIWVLQLPFIFILIQRRGVL 372
            T  F ICA VVA    AG   VLT L L  WE G++ L+++GP   S GFL+G ++V+  +T  TA+YWGQLA C+T Y GD    +YSC++R AMRG  AFA +IW++QLPF+ + + +R VL
Sbjct:   27 TVPFAICACVVAGTAAAGAGAVLTALALLAWEAGSIALMQRGPAALSQGFLVGASLVMTALTFETAVYWGQLAQCDT-YSGDVALARYSCAHRGAMRGACAFAVLIWLVQLPFVALAVAQRHVL 149
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BLAST of mRNA_H-elongata_contig6997.14643.1 vs. uniprot
Match: A0A7S2V692_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V692_9STRA)

HSP 1 Score: 111 bits (277), Expect = 1.360e-27
Identity = 58/110 (52.73%), Postives = 77/110 (70.00%), Query Frame = 1 
Query:    1 VFTGAFFICALVVASIDNAGFDVVLTGLILCVWELGAMWLLKKGPHETSLGFLIGVTIVLNMITLMTAIYWGQLANCETEYDGDYDQYSCSNRSAMRGVAAFASIIWVLQ 330
            V T  + IC+ VVAS  NAGF+ VLTGL+  V+ +GA  +L K     S+GFLIG + +L +++L TAIYWGQLANCET  +    QYSCSN+S  R V AFAS++++LQ
Sbjct:   22 VLTACYLICSFVVASTANAGFNAVLTGLVYAVYCVGAYQVLHKSKTALSVGFLIGFSALLIVLSLETAIYWGQLANCETVSES-ISQYSCSNKSGYRAVCAFASLLFILQ 130
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BLAST of mRNA_H-elongata_contig6997.14643.1 vs. uniprot
Match: W7TS32_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TS32_9STRA)

HSP 1 Score: 101 bits (252), Expect = 7.610e-24
Identity = 55/138 (39.86%), Postives = 85/138 (61.59%), Query Frame = 1 
Query:    1 VFTGAFFICALVVASIDNAGFDVVLTGLILCVWELGAMWLLKKGPHETSLGFLIGVTIVLNMITLMTAIYWGQLANCETEYDGDYDQYSCSNRSAMRGVAAFASIIWVLQLPFIFILIQRRGVLTREDFDAAGGSYGD 414
            VF   + IC+ VVAS  N GF+ VLT L+   +  G   +L++     ++GF++GV++++  ++LMTAI+WGQLANC   Y  D  +YSC+NRSA     AFA++++++QL F   L     VL R++F     +Y D
Sbjct:   22 VFVLCYTICSFVVASTANMGFNAVLTALLYIFYVAGTYHVLQRSKMPLAVGFVLGVSVMITFLSLMTAIFWGQLANCSPGYY-DIKRYSCTNRSAYSATCAFATLLFLVQLVFTSAL-----VLWRDEFIQDSSAYDD 153
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BLAST of mRNA_H-elongata_contig6997.14643.1 vs. uniprot
Match: A0A7S2S6Q8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S6Q8_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 3.000e-16
Identity = 45/110 (40.91%), Postives = 67/110 (60.91%), Query Frame = 1 
Query:    4 FTGAFFICALVVASIDNAGFDVVLTGLILCVWELGAMWLLKKGPH-ETSLGFLIGVTIVLNMITLMTAIYWGQLANCETEYDGDYDQYSCSNRSAMRGVAAFASIIWVLQ 330
            FTG FFICA V A   N GF+VV T           + ++ +  H +  +GFL+G++     ++L TAI+WGQLA+C+  +     QYSCSN SA + V AFA+++++LQ
Sbjct:   33 FTGCFFICACVAAKTANMGFNVVFTSFCFGFHVAVGILVIHRSLHTQLWVGFLLGLSGATAWLSLQTAIFWGQLADCD-RHAHHLSQYSCSNVSAYKAVCAFAALLFILQ 141
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BLAST of mRNA_H-elongata_contig6997.14643.1 vs. uniprot
Match: D8LG48_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LG48_ECTSI)

HSP 1 Score: 80.9 bits (198), Expect = 1.530e-15
Identity = 56/151 (37.09%), Postives = 83/151 (54.97%), Query Frame = 1 
Query:    1 VFTGAFFICALVVASIDNAGFDVVLTGLILCVWE--LGAMWLLKK---GPHETSL-------GFLIGVTIVLNMITLMTAIYWGQLANCETEYDGDYDQYSCSNRSAMRGVAAFASIIWVLQLPFIFILIQRRGVLTREDFDAAGGSYGDY 417
            V T  FFICA VV+S  NAG +VVLT ++   +   L  ++  K+   G  +T++       G LIG+T ++  ++LMTA+YWGQ++ CE + D D D YSC N   M  VA FAS + + +   +  LI     L +ED     G Y ++
Sbjct:   28 VLTICFFICACVVSSNANAGLNVVLTAMMYVAYVGLLAVVFNRKRATDGGMDTAMAIEPIVGGGLIGITTMMCFLSLMTAVYWGQMSGCEDDTD-DVDGYSCYNSFGMAAVAWFASFLLISEAVTLAALI-----LWKEDMFFVDGGYDNF 172
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BLAST of mRNA_H-elongata_contig6997.14643.1 vs. uniprot
Match: A0A7R9U3K6_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U3K6_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 5.840e-12
Identity = 40/109 (36.70%), Postives = 61/109 (55.96%), Query Frame = 1 
Query:    4 FTGAFFICALVVASIDNAGFDVVLTGLILCVWELGAMWLLKKGPHETSLGFLIGVTIVLNMITLMTAIYWGQLANCETEYDGDYDQYSCSNRSAMRGVAAFASIIWVLQ 330
            F   FFICA VV+S  NAGF+   T L+  ++ +  +  +  G +      L+GV   + ++   TAI+WGQLA+CE   + +   YSCS RSA     AFA ++++ Q
Sbjct:   47 FAFCFFICACVVSSTANAGFNAFTTALLNIIFCVVMIRAINFGRNALLSNVLVGVGYTMMLMNFQTAIFWGQLADCEKVKE-EIPGYSCSTRSAYGATCAFAVLLFLAQ 154
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BLAST of mRNA_H-elongata_contig6997.14643.1 vs. uniprot
Match: A0A2D4BZK0_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BZK0_PYTIN)

HSP 1 Score: 57.8 bits (138), Expect = 2.760e-7
Identity = 35/118 (29.66%), Postives = 63/118 (53.39%), Query Frame = 1 
Query:   25 CALVVASI-----DNAGFDVVLTGLILCVWELGAMWLLKKGPHETSLGFLIGVTIVLNMITLMTAIYWGQLANCETEYDGDYDQYSCSNRSAMRGVAAFASIIWVLQLPFIFILIQRR 363
            C L VA++        GF+  LT  +  V+  GA+ +L K P   S+G LIG ++++ +++L  AIYWG +A           + + +  SA    + F S+I+V+QL   +I+++ +
Sbjct:   21 CGLXVATLFLLETPYVGFNAFLTASLHVVYAFGAIVILNKSPSAYSIGILIGASLLILVLSLEGAIYWGLVA-----------RDNLNRESASIAASGFHSLIFVIQLAVTWIVVKAK 127
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6997.14643.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D7FPE0_ECTSI4.860e-8870.88Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z3N9_9STRA4.110e-3249.19Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A7S2V692_9STRA1.360e-2752.73Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
W7TS32_9STRA7.610e-2439.86Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A7S2S6Q8_9STRA3.000e-1640.91Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
D8LG48_ECTSI1.530e-1537.09Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7R9U3K6_9STRA5.840e-1236.70Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A2D4BZK0_PYTIN2.760e-729.66Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig6997contigH-elongata_contig6997:5143..7024 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-14_004580.1
Exons5
Model size529
Cds size528
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig6997.14643.1prot_H-elongata_contig6997.14643.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig6997 5143..7024 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931097.0439646-CDS-H-elongata_contig6997:5142..52761622931097.0439646-CDS-H-elongata_contig6997:5142..5276Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6997 5143..5276 -
1691679696.6017401-CDS-H-elongata_contig6997:5142..52761691679696.6017401-CDS-H-elongata_contig6997:5142..5276Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6997 5143..5276 -
1622931097.0591035-CDS-H-elongata_contig6997:5560..56241622931097.0591035-CDS-H-elongata_contig6997:5560..5624Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6997 5561..5624 -
1691679696.609875-CDS-H-elongata_contig6997:5560..56241691679696.609875-CDS-H-elongata_contig6997:5560..5624Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6997 5561..5624 -
1622931097.0788834-CDS-H-elongata_contig6997:5959..60761622931097.0788834-CDS-H-elongata_contig6997:5959..6076Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6997 5960..6076 -
1691679696.6182466-CDS-H-elongata_contig6997:5959..60761691679696.6182466-CDS-H-elongata_contig6997:5959..6076Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6997 5960..6076 -
1622931097.096797-CDS-H-elongata_contig6997:6422..64881622931097.096797-CDS-H-elongata_contig6997:6422..6488Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6997 6423..6488 -
1691679696.6274164-CDS-H-elongata_contig6997:6422..64881691679696.6274164-CDS-H-elongata_contig6997:6422..6488Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6997 6423..6488 -
1622931097.1129785-CDS-H-elongata_contig6997:6877..70241622931097.1129785-CDS-H-elongata_contig6997:6877..7024Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6997 6878..7024 -
1691679696.6369743-CDS-H-elongata_contig6997:6877..70241691679696.6369743-CDS-H-elongata_contig6997:6877..7024Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6997 6878..7024 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig6997.14643.1

>prot_H-elongata_contig6997.14643.1 ID=prot_H-elongata_contig6997.14643.1|Name=mRNA_H-elongata_contig6997.14643.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=176bp
VFTGAFFICALVVASIDNAGFDVVLTGLILCVWELGAMWLLKKGPHETSL
GFLIGVTIVLNMITLMTAIYWGQLANCETEYDGDYDQYSCSNRSAMRGVA
AFASIIWVLQLPFIFILIQRRGVLTREDFDAAGGSYGDYGDGAYDRWVRP
PADEHLGAAEGLGATVTPVPETSDL*
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mRNA from alignment at H-elongata_contig6997:5143..7024-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig6997.14643.1 ID=mRNA_H-elongata_contig6997.14643.1|Name=mRNA_H-elongata_contig6997.14643.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1882bp|location=Sequence derived from alignment at H-elongata_contig6997:5143..7024- (Himanthalia elongata Himel1 dioecious)
GTTTTCACGGGGGCGTTCTTCATCTGCGCTCTCGTTGTGGCGTCGATAGA
CAACGCCGGGTTCGACGTCGTGCTGACGGGCCTGATTCTCTGCGTGTGGG
AGTTAGGCGCCATGTGGCTCCTCAAGAAGGGACCGCATGAAACTTCGGTG
AGGATTTGAAAAGACCGTCCAATATTCGCATGGCGCTCTCGTTCGTCGTG
GAAGGCGTAGAGCGAAGTCTGAATACCCTAGTATCGATGCTGATAGAGTC
GATGAGATCGAAGCCACGGCTGTGACCCTTTGCTGGTTCTGTGTAGGTTG
ATGGCGGACGCGAGTTGCCACCCGAAAACCCTTTTGTGAATATGCTAGTT
GCGTCGATTGACGCGCACACCGGCAAAAAATTCGCTGCATCAATCTGAAC
ACCGATGCCTCCCAGCTTGATCGTTGAACCTCACGAGGGATGTGTGCGGT
GTATTTCATTATTGTCTGTATGGGTTTCGTCATCTACACGGACGCCTCTC
GGGTCTTACTGGGTGTGATCGCACCGGTTCTCACAGCTCGGATTCCTGAT
CGGAGTGACGATCGTGCTGAACATGATCACCCTCATGACGGCCATCTACT
GGGTGAGTCTCGATGGCCGACGAAGGCTGTCCAGATCGAATACCGGTTGC
ATTTTGCCACCAGTTGGGTGGTTTTTTAAGAAGTGCTGGACCATTTGGCT
ACATCCGGGAGGGATCGACGGCTTTATAGCTTCTGCCTCGAGTCGAGGGA
GCTCTGCACACCGAAAGGCAACCACACGAATATGGTGCTGCTGTACTCCC
TGTCCTTGTGCTTCGCCACGTCGTTGCCAGACCGCACCGGACCATGTCTT
CCAACCGCGAGGGAACGATAGCGTTAGCGTATGCATCTCCCTTCCCATTG
CCCCTTGTCGGTACCCTTTGTGTGATCGTGCTCTCGTCTCGGCCGCAGGG
GCAACTGGCGAATTGCGAAACCGAATACGACGGTGACTACGACCAGTACT
CGTGTAGCAACCGCTCGGCAATGAGGGGCGTCGCCGCATTCGCCTCAATC
ATCTGGGTGCTTCAGGTGCCTCTATTCCTAGAGCGCGCCCGGCGTCTTCT
TGGTTGCTCTTTAGCCGACGAAAGCAGGGTCCAGACATTGGAATATTAGA
GTCGAGATAAAGGCGGTACCTCTGTCCCTGGGCTCGGTGATCACCAATGG
AGTCCCGTGGGTGGTAATTCTTCAAACTCCAAGGGATAATTGCGACGCCT
GACACTATAGGCTTGTTGTGTCTACTTAAGTACTTCGAACGTACGTTTGC
GAATACAAACGTTTTGTGTGCCGTTGAATGCCTTCCCGTCTTGACAGCGA
TCTTGAGTCGCGTTCCCCTCGTGATATCGGCCGATTTTCCCCTCCATCAG
CTCCCGTTCATCTTCATCCTGATCCAACGAAGGGGAGTGCTCACCCGAGA
AGACTTCGATGCCGGTGCGTGGTAGATGGGACGGACGGACGGCCTCGCGC
TCACGGTACGGGGATGTGTTGTGTTTGCTTTCCGATGTTCAAATACGGCG
TATCTAAGATCTCACTGAGCGCCGTTCCCAAAACCAATCGAGTCCCCGAG
ATGCATACGCTCGGGCGTGTACATTTATACGGTGCTCCTCTCTCTTACTC
TTAAAACAAACCCTTGAAACCCATTTCGGTTGGTTCACGTTTTGTGAATA
TATTATACTGCGCGTCGCGCTTCCCCTCTTTGTTGGCACAAATAGGAGCA
GGCGGGAGCTACGGCGACTACGGCGATGGAGCCTACGACCGCTGGGTAAG
GCCGCCAGCGGACGAACATCTCGGCGCAGCAGAAGGCTTGGGCGCCACCG
TCACCCCTGTACCCGAAACCTCGGACCTTTGA
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Coding sequence (CDS) from alignment at H-elongata_contig6997:5143..7024-

>mRNA_H-elongata_contig6997.14643.1 ID=mRNA_H-elongata_contig6997.14643.1|Name=mRNA_H-elongata_contig6997.14643.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1056bp|location=Sequence derived from alignment at H-elongata_contig6997:5143..7024- (Himanthalia elongata Himel1 dioecious)
GTTTTCACGGGGGCGTTCTTCATCTGCGCTCTCGTTGTGGCGTCGATAGA
CAACGCCGGGTTCGACGTCGTGCTGACGGGCCTGATTCTCTGCGTGTGGG
AGTTAGGCGCCATGTGGCTCCTCAAGAAGGGACCGCATGAAACTTCGGTT
TTCACGGGGGCGTTCTTCATCTGCGCTCTCGTTGTGGCGTCGATAGACAA
CGCCGGGTTCGACGTCGTGCTGACGGGCCTGATTCTCTGCGTGTGGGAGT
TAGGCGCCATGTGGCTCCTCAAGAAGGGACCGCATGAAACTTCGCTCGGA
TTCCTGATCGGAGTGACGATCGTGCTGAACATGATCACCCTCATGACGGC
CATCTACTGGCTCGGATTCCTGATCGGAGTGACGATCGTGCTGAACATGA
TCACCCTCATGACGGCCATCTACTGGGGGCAACTGGCGAATTGCGAAACC
GAATACGACGGTGACTACGACCAGTACTCGTGTAGCAACCGCTCGGCAAT
GAGGGGCGTCGCCGCATTCGCCTCAATCATCTGGGTGCTTCAGGGGCAAC
TGGCGAATTGCGAAACCGAATACGACGGTGACTACGACCAGTACTCGTGT
AGCAACCGCTCGGCAATGAGGGGCGTCGCCGCATTCGCCTCAATCATCTG
GGTGCTTCAGCTCCCGTTCATCTTCATCCTGATCCAACGAAGGGGAGTGC
TCACCCGAGAAGACTTCGATGCCGCTCCCGTTCATCTTCATCCTGATCCA
ACGAAGGGGAGTGCTCACCCGAGAAGACTTCGATGCCGCAGGCGGGAGCT
ACGGCGACTACGGCGATGGAGCCTACGACCGCTGGGTAAGGCCGCCAGCG
GACGAACATCTCGGCGCAGCAGAAGGCTTGGGCGCCACCGTCACCCCTGT
ACCCGAAACCTCGGACCTTTGACAGGCGGGAGCTACGGCGACTACGGCGA
TGGAGCCTACGACCGCTGGGTAAGGCCGCCAGCGGACGAACATCTCGGCG
CAGCAGAAGGCTTGGGCGCCACCGTCACCCCTGTACCCGAAACCTCGGAC
CTTTGA
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