mRNA_H-elongata_contig69947.14639.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig69947.14639.1
Unique NamemRNA_H-elongata_contig69947.14639.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig69947.14639.1 vs. uniprot
Match: A0A6H5JTY8_9PHAE (CP-type G domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JTY8_9PHAE)

HSP 1 Score: 283 bits (724), Expect = 9.770e-90
Identity = 151/168 (89.88%), Postives = 162/168 (96.43%), Query Frame = 1 
Query:    4 HRDEDASVRHGQSSRRAYFRELKKVVETADVVLEVLDARDPLGSRAEAVEEAVSSKPGKKLVLVLNKVDLVPKHIVAKWLKHLRRSYPAIAFKASTQENASSSIKQTKGSAEKSADGMLNRSGAVGTEALMGLLKNYCRSLNLKTAISVGVVGYPNVGKSSLINSLKR 507
            H+DEDASVRHGQSSRRAYFRELKKVVETADV+LEVLDARDPLGSRA+AVE AV SK  KKLVLVLNKVDLVPK +VAKWLKHLRRS+PAIAFKASTQE+ SSSIKQTKGSA+K+ADGMLNRSGAVGTEALMG+LKNYCRSLNLKTAI+VGV+GYPNVGKSSLINSLKR
Sbjct:  124 HQDEDASVRHGQSSRRAYFRELKKVVETADVILEVLDARDPLGSRAQAVEAAVLSKASKKLVLVLNKVDLVPKDVVAKWLKHLRRSFPAIAFKASTQES-SSSIKQTKGSADKAADGMLNRSGAVGTEALMGVLKNYCRSLNLKTAITVGVIGYPNVGKSSLINSLKR 290
[Close]
BLAST of mRNA_H-elongata_contig69947.14639.1 vs. uniprot
Match: A0A836CE27_9STRA (Nug1, nuclear ribosome-associated GTPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CE27_9STRA)

HSP 1 Score: 216 bits (549), Expect = 1.200e-63
Identity = 113/160 (70.62%), Postives = 134/160 (83.75%), Query Frame = 1 
Query:   28 RHGQSSRRAYFRELKKVVETADVVLEVLDARDPLGSRAEAVEEAVSSKPGKKLVLVLNKVDLVPKHIVAKWLKHLRRSYPAIAFKASTQENASSSIKQTKGSAEKSADGMLNRSGAVGTEALMGLLKNYCRSLNLKTAISVGVVGYPNVGKSSLINSLKR 507
            RHG+ SRRAY REL+KVV+ +DVVL+VLDARDPLGSRA AVEEAV S+PGKKLVLVLNKVDLVPK +VA+WLK LR  +P +AFKASTQ     S +Q  G A K+    L+RSG++G EALM +LKNYCRSL++KTAI+VG++GYPNVGKSSLINSLKR
Sbjct:  132 RHGEQSRRAYLRELRKVVDHSDVVLQVLDARDPLGSRASAVEEAVLSRPGKKLVLVLNKVDLVPKEVVAQWLKVLREDHPTVAFKASTQ-GGGGSRQQVGGDANKAGAAALSRSGSIGAEALMNILKNYCRSLDIKTAITVGIIGYPNVGKSSLINSLKR 290
[Close]
BLAST of mRNA_H-elongata_contig69947.14639.1 vs. uniprot
Match: A0A7S2HHD9_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HHD9_9STRA)

HSP 1 Score: 197 bits (501), Expect = 2.800e-57
Identity = 103/158 (65.19%), Postives = 129/158 (81.65%), Query Frame = 1 
Query:   34 GQSSRRAYFRELKKVVETADVVLEVLDARDPLGSRAEAVEEAVSSKPGKKLVLVLNKVDLVPKHIVAKWLKHLRRSYPAIAFKASTQENASSSIKQTKGSAEKSADGMLNRSGAVGTEALMGLLKNYCRSLNLKTAISVGVVGYPNVGKSSLINSLKR 507
            GQSSRRA+ R+L+KV+ET+DV+LEVLDARDP GSRA A EEAV+  P K+L+LVLNKVDLVPK  VA WL  LRRS+P +AFKA TQ++ +S  +    +A ++    L RSG++G EAL+GLLKNYCRSL++KT+I+VGV+GYPN GKSSLINSLKR
Sbjct:  147 GQSSRRAFLRDLRKVIETSDVLLEVLDARDPEGSRALAAEEAVARHPNKRLILVLNKVDLVPKEAVAGWLARLRRSHPTVAFKACTQQSGASWQRGAPSNAAEATSDALARSGSLGGEALLGLLKNYCRSLDIKTSITVGVLGYPNTGKSSLINSLKR 304
[Close]
BLAST of mRNA_H-elongata_contig69947.14639.1 vs. uniprot
Match: A0A4D9DAV5_9STRA (CP-type G domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DAV5_9STRA)

HSP 1 Score: 199 bits (506), Expect = 2.820e-57
Identity = 107/158 (67.72%), Postives = 127/158 (80.38%), Query Frame = 1 
Query:   34 GQSSRRAYFRELKKVVETADVVLEVLDARDPLGSRAEAVEEAVSSKPGKKLVLVLNKVDLVPKHIVAKWLKHLRRSYPAIAFKASTQENASSSIKQTKGSAEKSADGMLNRSGAVGTEALMGLLKNYCRSLNLKTAISVGVVGYPNVGKSSLINSLKR 507
            GQ SRRA+ R+LK+VVE ADVVLEVLDARDPLGSR E VEE +  KP KKLVLVLNKVDLVP+ +V  WL +LRR +P +AFK++TQE     + Q  G A K+   +L+RSG+VG EAL+ LLKNY RSL++KT+ISVGVVGYPNVGKSSLINSLKR
Sbjct:  138 GQQSRRAFIRDLKEVVEQADVVLEVLDARDPLGSRGEGVEELILRKPNKKLVLVLNKVDLVPREVVGAWLAYLRRFHPTVAFKSATQEQRVQ-LAQHGGDASKAGANLLSRSGSVGAEALLQLLKNYSRSLDIKTSISVGVVGYPNVGKSSLINSLKR 294
[Close]
BLAST of mRNA_H-elongata_contig69947.14639.1 vs. uniprot
Match: H3GVP4_PHYRM (CP-type G domain-containing protein n=17 Tax=Phytophthora TaxID=4783 RepID=H3GVP4_PHYRM)

HSP 1 Score: 191 bits (484), Expect = 8.800e-55
Identity = 102/156 (65.38%), Postives = 125/156 (80.13%), Query Frame = 1 
Query:   40 SSRRAYFRELKKVVETADVVLEVLDARDPLGSRAEAVEEAVSSKPGKKLVLVLNKVDLVPKHIVAKWLKHLRRSYPAIAFKASTQENASSSIKQTKGSAEKSADGMLNRSGAVGTEALMGLLKNYCRSLNLKTAISVGVVGYPNVGKSSLINSLKR 507
            +SRRAY +EL+KVV+ ADVVLEVLDARDP+G R   +E+A+ ++ GKKLVLVLNKVDLVP H++  WLK+LR  YP +AFKASTQ N S  +    G A+K+A   +N S AVGT+ALM LLKNYCRS  +KTAI+VGV+GYPNVGKSS+INSLKR
Sbjct:  108 ASRRAYMKELRKVVDKADVVLEVLDARDPMGCRTLEMEDAIGNRHGKKLVLVLNKVDLVPPHVLQPWLKYLRGFYPTVAFKASTQ-NQSKHLSANFGRADKAAGEAVNGSKAVGTDALMQLLKNYCRSHGVKTAITVGVIGYPNVGKSSVINSLKR 262
[Close]
BLAST of mRNA_H-elongata_contig69947.14639.1 vs. uniprot
Match: A0A1V9YUQ5_9STRA (Guanine nucleotide-binding protein-like 3 (Fragment) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YUQ5_9STRA)

HSP 1 Score: 182 bits (461), Expect = 4.450e-54
Identity = 101/155 (65.16%), Postives = 120/155 (77.42%), Query Frame = 1 
Query:   43 SRRAYFRELKKVVETADVVLEVLDARDPLGSRAEAVEEAVSSKPGKKLVLVLNKVDLVPKHIVAKWLKHLRRSYPAIAFKASTQENASSSIKQTKGSAEKSADGMLNRSGAVGTEALMGLLKNYCRSLNLKTAISVGVVGYPNVGKSSLINSLKR 507
            S++ Y +ELKKVVE ADV+LEVLDARDP+G R   +E+ + SK GKK+VLVLNK+DLVP  I+  WL HLR  YP IAFKASTQ+   SS    KG  EK+   ++  S AVGTEALM LLKNYCRS N+KTAI+VGV+GYPNVGKSS+INSLKR
Sbjct:  116 SKKQYMKELKKVVERADVILEVLDARDPMGCRTMDMEDLMRSK-GKKVVLVLNKIDLVPSEILQPWLSHLRTFYPTIAFKASTQDKNISSSGINKG--EKAQGKLMTGSRAVGTEALMQLLKNYCRSSNIKTAITVGVIGYPNVGKSSVINSLKR 267
[Close]
BLAST of mRNA_H-elongata_contig69947.14639.1 vs. uniprot
Match: A0A6G0JUJ3_9STRA (CP-type G domain-containing protein n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6G0JUJ3_9STRA)

HSP 1 Score: 189 bits (479), Expect = 5.580e-54
Identity = 101/156 (64.74%), Postives = 125/156 (80.13%), Query Frame = 1 
Query:   40 SSRRAYFRELKKVVETADVVLEVLDARDPLGSRAEAVEEAVSSKPGKKLVLVLNKVDLVPKHIVAKWLKHLRRSYPAIAFKASTQENASSSIKQTKGSAEKSADGMLNRSGAVGTEALMGLLKNYCRSLNLKTAISVGVVGYPNVGKSSLINSLKR 507
            +SRRAY +EL+KVV+ ADVVLEVLDARDP+G R   +E+A+ ++ GKKLVLVLNKVDLVP H++  WLK+LR  YP +AFKASTQ N S  +    G A+K+A   ++ S AVGT+ALM LLKNYCRS  +KTAI+VGV+GYPNVGKSS+INSLKR
Sbjct:  111 ASRRAYMKELRKVVDKADVVLEVLDARDPMGCRTLDMEDAIGNRHGKKLVLVLNKVDLVPPHVLQPWLKYLRGFYPTVAFKASTQ-NQSKHLSANFGKADKAAGEAVSGSKAVGTDALMQLLKNYCRSHGVKTAITVGVIGYPNVGKSSVINSLKR 265
[Close]
BLAST of mRNA_H-elongata_contig69947.14639.1 vs. uniprot
Match: A0A8K1CQG3_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CQG3_PYTOL)

HSP 1 Score: 188 bits (478), Expect = 9.030e-54
Identity = 97/156 (62.18%), Postives = 126/156 (80.77%), Query Frame = 1 
Query:   40 SSRRAYFRELKKVVETADVVLEVLDARDPLGSRAEAVEEAVSSKPGKKLVLVLNKVDLVPKHIVAKWLKHLRRSYPAIAFKASTQENASSSIKQTKGSAEKSADGMLNRSGAVGTEALMGLLKNYCRSLNLKTAISVGVVGYPNVGKSSLINSLKR 507
            +SRRAY +EL+KVV+ ADV+LEVLDARDP+G R   +EEA+ ++ GKK+VLVLNK+DLVP H++  WL +LR  YP +AFKASTQ+  S     T G A+K++  M++ S AVGT+ALM LLKNYCR+ ++KTAI+VGV+GYPNVGKSS+INSLKR
Sbjct:  122 NSRRAYMKELRKVVDRADVILEVLDARDPMGCRTMDMEEAIGNRSGKKIVLVLNKIDLVPPHVLQPWLNYLRTFYPTVAFKASTQQQTSRLSANT-GRADKASTDMVSGSKAVGTDALMQLLKNYCRNNHIKTAITVGVIGYPNVGKSSVINSLKR 276
[Close]
BLAST of mRNA_H-elongata_contig69947.14639.1 vs. uniprot
Match: A0A1Y2EQC2_9FUNG (p-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Neocallimastix californiae TaxID=1754190 RepID=A0A1Y2EQC2_9FUNG)

HSP 1 Score: 182 bits (463), Expect = 1.390e-53
Identity = 97/166 (58.43%), Postives = 127/166 (76.51%), Query Frame = 1 
Query:   13 EDASVRHGQSSRRAYFRELKKVVETADVVLEVLDARDPLGSRAEAVEEAV-SSKPGKKLVLVLNKVDLVPKHIVAKWLKHLRRSYPAIAFKASTQENASSSIKQTKGSAEKSADGMLNRSGAVGTEALMGLLKNYCRSLNLKTAISVGVVGYPNVGKSSLINSLKR 507
            E A+     +SR+AYF+E KKV++ ADVVLEVLDARDPLG R + +E+ +  S   KK++L+LNK+DLVPK +V  WLK+LR  YP IAFKASTQ N  S++ Q   SAE ++D MLN S  +G + L+ LLKNYCR+ N+KT+I+VGV+G+PNVGKSS+INSLKR
Sbjct:   21 EGAATGQKDNSRKAYFKEFKKVLDNADVVLEVLDARDPLGCRTKRIEQDILESGVDKKIILILNKIDLVPKDVVNDWLKYLRNEYPTIAFKASTQ-NQRSNLGQLNVSAEAASDSMLNSSECIGADNLIKLLKNYCRNANIKTSITVGVIGFPNVGKSSVINSLKR 185
[Close]
BLAST of mRNA_H-elongata_contig69947.14639.1 vs. uniprot
Match: A0A0P1AHK5_PLAHL (Guanine nucleotide-binding 3 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AHK5_PLAHL)

HSP 1 Score: 187 bits (476), Expect = 1.430e-53
Identity = 100/156 (64.10%), Postives = 125/156 (80.13%), Query Frame = 1 
Query:   40 SSRRAYFRELKKVVETADVVLEVLDARDPLGSRAEAVEEAVSSKPGKKLVLVLNKVDLVPKHIVAKWLKHLRRSYPAIAFKASTQENASSSIKQTKGSAEKSADGMLNRSGAVGTEALMGLLKNYCRSLNLKTAISVGVVGYPNVGKSSLINSLKR 507
            +SRRAY +EL+KVV+ ADV+LEVLDARDP+G R   +E+ + ++ GKKLVLVLNKVDLVP H++  WLK+LR  YP +AFKASTQ N S  +  T G A+K+A   ++ S AVGT+ALM LLKNYCR+  LKTAI+VGV+GYPNVGKSS+INSLKR
Sbjct:  107 ASRRAYMKELRKVVDKADVILEVLDARDPMGCRTLDMEDTIGNRYGKKLVLVLNKVDLVPPHVLQPWLKYLRGYYPTVAFKASTQ-NQSKHLSATFGRADKAAVDAVSGSKAVGTDALMQLLKNYCRNHGLKTAITVGVIGYPNVGKSSVINSLKR 261
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig69947.14639.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JTY8_9PHAE9.770e-9089.88CP-type G domain-containing protein n=2 Tax=Ectoca... [more]
A0A836CE27_9STRA1.200e-6370.63Nug1, nuclear ribosome-associated GTPase n=1 Tax=T... [more]
A0A7S2HHD9_9STRA2.800e-5765.19Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A4D9DAV5_9STRA2.820e-5767.72CP-type G domain-containing protein n=3 Tax=Monodo... [more]
H3GVP4_PHYRM8.800e-5565.38CP-type G domain-containing protein n=17 Tax=Phyto... [more]
A0A1V9YUQ5_9STRA4.450e-5465.16Guanine nucleotide-binding protein-like 3 (Fragmen... [more]
A0A6G0JUJ3_9STRA5.580e-5464.74CP-type G domain-containing protein n=5 Tax=Phytop... [more]
A0A8K1CQG3_PYTOL9.030e-5462.18Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A1Y2EQC2_9FUNG1.390e-5358.43p-loop containing nucleoside triphosphate hydrolas... [more]
A0A0P1AHK5_PLAHL1.430e-5364.10Guanine nucleotide-binding 3 n=1 Tax=Plasmopara ha... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig69947contigH-elongata_contig69947:573..2842 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score290.0
Seed ortholog evalue7e-76
Seed eggNOG ortholog2880.D7G1C4
Preferred nameGNL3
KEGG koko:K14538
KEGG Pathwayko03008,map03008
GOsGO:0000003,GO:0000054,GO:0000055,GO:0000166,GO:0000226,GO:0000278,GO:0000280,GO:0000459,GO:0000460,GO:0000463,GO:0000466,GO:0000467,GO:0000469,GO:0000470,GO:0001652,GO:0001654,GO:0001882,GO:0001883,GO:0002119,GO:0002164,GO:0003006,GO:0003407,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003824,GO:0003924,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005697,GO:0005730,GO:0005737,GO:0005829,GO:0005911,GO:0006139,GO:0006355,GO:0006357,GO:0006364,GO:0006396,GO:0006403,GO:0006405,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007051,GO:0007052,GO:0007088,GO:0007096,GO:0007275,GO:0007276,GO:0007281,GO:0007346,GO:0007399,GO:0007423,GO:0008104,GO:0008150,GO:0008152,GO:0008283,GO:0009506,GO:0009653,GO:0009790,GO:0009791,GO:0009793,GO:0009888,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009908,GO:0009987,GO:0010073,GO:0010074,GO:0010077,GO:0010154,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010564,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010638,GO:0010639,GO:0015031,GO:0015833,GO:0015931,GO:0016043,GO:0016070,GO:0016072,GO:0016462,GO:0016604,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0017145,GO:0019001,GO:0019219,GO:0019222,GO:0019827,GO:0019953,GO:0022008,GO:0022402,GO:0022412,GO:0022414,GO:0022607,GO:0022613,GO:0030054,GO:0030154,GO:0030684,GO:0030687,GO:0030856,GO:0031123,GO:0031125,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031396,GO:0031397,GO:0031399,GO:0031400,GO:0031401,GO:0031503,GO:0031647,GO:0031974,GO:0031981,GO:0032091,GO:0032092,GO:0032204,GO:0032205,GO:0032206,GO:0032210,GO:0032211,GO:0032268,GO:0032269,GO:0032270,GO:0032501,GO:0032502,GO:0032504,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032879,GO:0032880,GO:0032991,GO:0033036,GO:0033043,GO:0033044,GO:0033233,GO:0033234,GO:0033235,GO:0033750,GO:0034470,GO:0034613,GO:0034641,GO:0034660,GO:0035639,GO:0036094,GO:0040008,GO:0040014,GO:0042127,GO:0042254,GO:0042273,GO:0042886,GO:0043010,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043393,GO:0043496,GO:0043628,GO:0044085,GO:0044092,GO:0044093,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044452,GO:0044464,GO:0044703,GO:0045184,GO:0045595,GO:0045604,GO:0045664,GO:0045682,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0045944,GO:0045995,GO:0046483,GO:0046907,GO:0048027,GO:0048285,GO:0048316,GO:0048366,GO:0048367,GO:0048437,GO:0048444,GO:0048468,GO:0048507,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048608,GO:0048609,GO:0048638,GO:0048699,GO:0048731,GO:0048825,GO:0048827,GO:0048831,GO:0048856,GO:0048869,GO:0050657,GO:0050658,GO:0050767,GO:0050789,GO:0050793,GO:0050794,GO:0051052,GO:0051053,GO:0051054,GO:0051098,GO:0051099,GO:0051100,GO:0051128,GO:0051129,GO:0051130,GO:0051168,GO:0051169,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051225,GO:0051234,GO:0051236,GO:0051239,GO:0051246,GO:0051247,GO:0051248,GO:0051252,GO:0051253,GO:0051254,GO:0051301,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0051704,GO:0051726,GO:0051783,GO:0051960,GO:0055044,GO:0060041,GO:0060255,GO:0060284,GO:0060341,GO:0061458,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070727,GO:0070925,GO:0071166,GO:0071426,GO:0071428,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0080090,GO:0090073,GO:0090304,GO:0090305,GO:0090307,GO:0090501,GO:0090503,GO:0090567,GO:0090696,GO:0090697,GO:0090698,GO:0097159,GO:0097367,GO:0098727,GO:0099402,GO:0140014,GO:1901265,GO:1901360,GO:1901363,GO:1901987,GO:1901990,GO:1902679,GO:1902680,GO:1902850,GO:1902893,GO:1902895,GO:1903047,GO:1903320,GO:1903321,GO:1903322,GO:1903506,GO:1903507,GO:1903508,GO:1903827,GO:1903829,GO:1904356,GO:1904357,GO:1904814,GO:1904816,GO:1905392,GO:1990904,GO:2000024,GO:2000026,GO:2000112,GO:2000113,GO:2000278,GO:2000279,GO:2001141,GO:2001251,GO:2001252
EggNOG free text desc.guanine nucleotide-binding protein-like
EggNOG OGsCOG1161@1,KOG2484@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009
Hectar predicted targeting categoryother localisation
Exons4
Model size510
Cds size510
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig69947.14639.1prot_H-elongata_contig69947.14639.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig69947 573..2842 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931096.620359-CDS-H-elongata_contig69947:572..6471622931096.620359-CDS-H-elongata_contig69947:572..647Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69947 573..647 +
1691679696.4296403-CDS-H-elongata_contig69947:572..6471691679696.4296403-CDS-H-elongata_contig69947:572..647Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69947 573..647 +
1622931096.634229-CDS-H-elongata_contig69947:1107..12361622931096.634229-CDS-H-elongata_contig69947:1107..1236Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69947 1108..1236 +
1691679696.4438012-CDS-H-elongata_contig69947:1107..12361691679696.4438012-CDS-H-elongata_contig69947:1107..1236Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69947 1108..1236 +
1622931096.6508586-CDS-H-elongata_contig69947:1831..19541622931096.6508586-CDS-H-elongata_contig69947:1831..1954Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69947 1832..1954 +
1691679696.453332-CDS-H-elongata_contig69947:1831..19541691679696.453332-CDS-H-elongata_contig69947:1831..1954Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69947 1832..1954 +
1622931096.6694844-CDS-H-elongata_contig69947:2659..28421622931096.6694844-CDS-H-elongata_contig69947:2659..2842Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69947 2660..2842 +
1691679696.4622974-CDS-H-elongata_contig69947:2659..28421691679696.4622974-CDS-H-elongata_contig69947:2659..2842Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69947 2660..2842 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig69947.14639.1

>prot_H-elongata_contig69947.14639.1 ID=prot_H-elongata_contig69947.14639.1|Name=mRNA_H-elongata_contig69947.14639.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=170bp
KHRDEDASVRHGQSSRRAYFRELKKVVETADVVLEVLDARDPLGSRAEAV
EEAVSSKPGKKLVLVLNKVDLVPKHIVAKWLKHLRRSYPAIAFKASTQEN
ASSSIKQTKGSAEKSADGMLNRSGAVGTEALMGLLKNYCRSLNLKTAISV
GVVGYPNVGKSSLINSLKR*
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mRNA from alignment at H-elongata_contig69947:573..2842+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig69947.14639.1 ID=mRNA_H-elongata_contig69947.14639.1|Name=mRNA_H-elongata_contig69947.14639.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2270bp|location=Sequence derived from alignment at H-elongata_contig69947:573..2842+ (Himanthalia elongata Himel1 dioecious)
AAGCACCGAGACGAAGATGCCAGCGTACGACACGGGCAGAGCTCGCGCAG
GGCATACTTCCGAGAGCTCAAAAAGGTGAGGGGCGCGCGCTCCTGTATTC
GCAATAACTGCAATCAAGACAATCGACCGGGGCGAATGGCCCCGCGAGTG
ACTCGCCTTCACCAATTCGGCTGGGAGGAGGGAGAGTTCGAGTCGATTTG
CTAGCTTCGGGTTTAGGGTTCAGGTTCAGGTTCCAATCTGAGAAGCATAC
ACAAAAATTCAGGTGTTAAGTGTGTGCTGAAAACCAAGAGACTAAAAATA
AATAAATACAATTGGGCCATAACCTAAAAAAAAACACCCCCATAACCAGC
GAACGATCGATATCGGATCCCAATCGTCTTTCTCGCAAATGGGTAAGGCT
AGATGCGGTATAAGGAGAGCATCGTTGTCTCGGCATCGATATGAAATTTC
CTTGTCGAAGAGATCATATTATTGTACCATGAATTCATTCTCACTCTATC
CAAGTAATTTTTGTCGTTTTCTTTATTTTCGGCAGGTGGTGGAGACCGCG
GATGTCGTGCTAGAAGTGTTGGACGCGAGGGATCCCTTGGGCAGTCGCGC
GGAAGCCGTGGAAGAGGCGGTGTCGTCCAAGCCGGGCAAGAAGCTCGTTC
TGGTTCTCAACAAGGTTTGGATGGGGGAAGAAGGGTGGGGGGGAGTCTGA
GGGGTTTTCGTCCAACTAACCTACTATTAATAATACAGGAGTAGAGGTAG
TGGGAGCAGAGTGGATAAGACTGAAGCGTGTGCGGGTCTGATGATGGTGC
TCGCGTTCTTTGTGGGTTTGGACGGTAGGCGTGGATGTTTCAAAAGCGTA
GTGGCAGTTGTAGCACGAACAGCGGCGATAGAGCTCGAACTGTAAGTCTA
AAGAGTCAGTCTACAATCTTTATGGCGAGTGTCGTGGACTGTATACCCCC
GAGGGTTCAGCACACGGAGGGGAAAGCGCATTCTTGGTAATAATTAAAGC
ACAGGTGCTGCAACGCGAACGCTCTAACCCGACCAAAATATGCAGAGTTG
CGCACACATGCACGCACTGATTTGGCAACGCCCACCTGCCGAATTCGCCA
CGGTACTAAAAATAAAATGCGTTTTTTTTAAATAGAATAAAACAAAACAA
TTTATAACAAGACGGAAAATAACGTAACGTTATATAGCGTAACGAACTGT
GAAAAAAACCCTTCTCGCGCGTGCGGGCTAAGAATCTAACCCGACTGGTC
GCGACACAGGTGGATCTCGTGCCGAAGCACATCGTTGCCAAGTGGCTCAA
GCACCTCCGGCGATCGTACCCCGCGATCGCGTTTAAGGCCTCCACTCAAG
AAAACGCCTCCTCTTCCATCAAGCAAACCAAGGTAAGGGACCCGAGCGTG
GCGTGTGGTGTTGATAATAGCAAGCGAAGTACAGTATCTCTTTTTTATTT
TTAGCTTTTTTTTTTGGGGGGGGGGGGCAGTGGCGTGATACTGTGACCCT
CGACCGACGAGTTTCCATGCCTGCGGTGGGGCGCGCGTGCTTGCTTGCGT
TCGTGCGTGCCCCGGTGATGTATGTGTTTTCGGAGCAGCAAGGAACCGCT
TTTTCGCGGAGGCTTTTAAACCCGATCGGGGATGGAAATCATTCGGCACT
GATGATGTTTTCACTCTTAAAAACAAAAGAAAACGTGTGTTGCGATTACG
AACCTACACGTATTGAAATGCAGTGCCGCAAAGCCATTTTTTCCGAGGAC
GAGCGCGGACAAGTCGACGAAGTGTCCTTGTTATTATTTTCTCACATTGC
GTGGATCGGGGTGATTTGTAGTCAAGAGCGGAAGGGAATCAGTCGATCGT
TACGTCAAGGGTGTTTCCCTTTACCACCGCGATGTCCTTTTCACCCTTCA
AGCTGTTGCCACATGGCGTCGGTGAAAACGAGAGCGGCGTTACTGTTCAC
CACAGATAAAACAGCAACACACACGAACTGGAAAGTAGGAGCGTGAGATC
GATTGAGGTGAACGCGGAATTAAGGAAACGGGAAACAGTTGTCTATCCGC
CTCGTCGACACTGCGACACTATGCCTTTCGATTCTAGGGCTCTGCGGAAA
AGTCGGCAGATGGGATGCTGAACCGCTCGGGGGCGGTGGGCACCGAGGCC
CTCATGGGCTTGCTCAAGAATTACTGCCGCAGCCTCAACCTCAAGACGGC
CATCTCGGTCGGGGTGGTGGGATACCCTAACGTTGGGAAGTCGTCGCTCA
TCAATTCGCTCAAGAGGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig69947:573..2842+

>mRNA_H-elongata_contig69947.14639.1 ID=mRNA_H-elongata_contig69947.14639.1|Name=mRNA_H-elongata_contig69947.14639.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1020bp|location=Sequence derived from alignment at H-elongata_contig69947:573..2842+ (Himanthalia elongata Himel1 dioecious)
AAGCACCGAGACGAAGATGCCAGCGTACGACACGGGCAGAGCTCGCGCAG
GGCATACTTCCGAGAGCTCAAAAAGAAGCACCGAGACGAAGATGCCAGCG
TACGACACGGGCAGAGCTCGCGCAGGGCATACTTCCGAGAGCTCAAAAAG
GTGGTGGAGACCGCGGATGTCGTGCTAGAAGTGTTGGACGCGAGGGATCC
CTTGGGCAGTCGCGCGGAAGCCGTGGAAGAGGCGGTGTCGTCCAAGCCGG
GCAAGAAGCTCGTTCTGGTTCTCAACAAGGTGGTGGAGACCGCGGATGTC
GTGCTAGAAGTGTTGGACGCGAGGGATCCCTTGGGCAGTCGCGCGGAAGC
CGTGGAAGAGGCGGTGTCGTCCAAGCCGGGCAAGAAGCTCGTTCTGGTTC
TCAACAAGGTGGATCTCGTGCCGAAGCACATCGTTGCCAAGTGGCTCAAG
CACCTCCGGCGATCGTACCCCGCGATCGCGTTTAAGGCCTCCACTCAAGA
AAACGCCTCCTCTTCCATCAAGCAAACCAAGGTGGATCTCGTGCCGAAGC
ACATCGTTGCCAAGTGGCTCAAGCACCTCCGGCGATCGTACCCCGCGATC
GCGTTTAAGGCCTCCACTCAAGAAAACGCCTCCTCTTCCATCAAGCAAAC
CAAGGGCTCTGCGGAAAAGTCGGCAGATGGGATGCTGAACCGCTCGGGGG
CGGTGGGCACCGAGGCCCTCATGGGCTTGCTCAAGAATTACTGCCGCAGC
CTCAACCTCAAGACGGCCATCTCGGTCGGGGTGGTGGGATACCCTAACGT
TGGGAAGTCGTCGCTCATCAATTCGCTCAAGAGGTAAGGCTCTGCGGAAA
AGTCGGCAGATGGGATGCTGAACCGCTCGGGGGCGGTGGGCACCGAGGCC
CTCATGGGCTTGCTCAAGAATTACTGCCGCAGCCTCAACCTCAAGACGGC
CATCTCGGTCGGGGTGGTGGGATACCCTAACGTTGGGAAGTCGTCGCTCA
TCAATTCGCTCAAGAGGTAA
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