mRNA_H-elongata_contig69926.14638.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig69926.14638.1
Unique NamemRNA_H-elongata_contig69926.14638.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig69926.14638.1 vs. uniprot
Match: D8LHM0_ECTSI (Aryl sulfotransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHM0_ECTSI)

HSP 1 Score: 301 bits (771), Expect = 2.170e-97
Identity = 142/204 (69.61%), Postives = 169/204 (82.84%), Query Frame = 1
Query:    1 AKNWTLEALRSTPNRRFMKTHANLKDLPAGSAQGLKVIYVARNPKDTAVSLMHMADNRQGAKFR-NFSDMIRFFVQGRCENGSWFNHVLEWWEAANADPEHILFITYEGMLAAPEESIRKIADFIDINHTPEIIAKTTAASTFNAMKQNPKANVWGGNVHMRKGGAGGWRDIFSVRESEAFDKIYRNEMKGSGLKMDFGEGLVM 609
            A+ WTLE ++STPNRRF K+H+NLK LP GSA+GLKVIYVARNPKD +VSL H   ++Q A F  + SDMIR FVQGRC+NGSWFNHVLEWWEAA ADPEH+LF+ YE ML  PEE+IRKIADF  I HTPE IAKT AAST ++M+QNPKAN+     H+RKGGAGGWRD+++ RESEAFD+IY  +M+G+GL+MDFGEGLVM
Sbjct:  129 AQGWTLEKIKSTPNRRFFKSHSNLKQLPVGSAKGLKVIYVARNPKDVSVSLFHHVRHKQKAVFDGDQSDMIRCFVQGRCQNGSWFNHVLEWWEAAQADPEHVLFLHYENMLKEPEENIRKIADFAGIEHTPETIAKTAAASTIDSMRQNPKANIKPSENHLRKGGAGGWRDVYTARESEAFDEIYMQQMEGTGLRMDFGEGLVM 332          
BLAST of mRNA_H-elongata_contig69926.14638.1 vs. uniprot
Match: D8LJX5_ECTSI (Aryl sulfotransferase, C-terminal Aryl sulfotransferase, N-terminal n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJX5_ECTSI)

HSP 1 Score: 293 bits (750), Expect = 4.170e-94
Identity = 141/204 (69.12%), Postives = 167/204 (81.86%), Query Frame = 1
Query:    1 AKNWTLEALRSTPNRRFMKTHANLKDLPAGSAQGLKVIYVARNPKDTAVSLMHMADNRQGAKFRN-FSDMIRFFVQGRCENGSWFNHVLEWWEAANADPEHILFITYEGMLAAPEESIRKIADFIDINHTPEIIAKTTAASTFNAMKQNPKANVWGGNVHMRKGGAGGWRDIFSVRESEAFDKIYRNEMKGSGLKMDFGEGLVM 609
            AK WTL  ++STP+RRFMKTHANLK+LPAGSA+GLKVIYVARNPKD  VSL H   N++   F   FSD IR FV+G   NG WF+HVLEWWEAANADPEHILF+ YE MLA P+E IRKIA+F  IN+TP+I+AK  AAS+ +AMK+NPK N++    H+RKGGAGGWRD F+VRESEAFD+IYR +M+GSGL+MDFGEGLVM
Sbjct:  138 AKGWTLATIKSTPDRRFMKTHANLKNLPAGSAKGLKVIYVARNPKDVCVSLYHHVKNKRPDTFSGEFSDHIRSFVEGSQMNGPWFDHVLEWWEAANADPEHILFLHYEAMLAEPQEHIRKIAEFAGINYTPDILAKADAASSLSAMKRNPKTNLYPSKKHLRKGGAGGWRDSFTVRESEAFDEIYREQMEGSGLRMDFGEGLVM 341          
BLAST of mRNA_H-elongata_contig69926.14638.1 vs. uniprot
Match: D7G187_ECTSI (Aryl sulfotransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G187_ECTSI)

HSP 1 Score: 285 bits (728), Expect = 8.700e-91
Identity = 138/204 (67.65%), Postives = 160/204 (78.43%), Query Frame = 1
Query:    1 AKNWTLEALRSTPNRRFMKTHANLKDLPAGSAQGLKVIYVARNPKDTAVSLMHMADNRQGAKFR-NFSDMIRFFVQGRCENGSWFNHVLEWWEAANADPEHILFITYEGMLAAPEESIRKIADFIDINHTPEIIAKTTAASTFNAMKQNPKANVWGGNVHMRKGGAGGWRDIFSVRESEAFDKIYRNEMKGSGLKMDFGEGLVM 609
            AK WTLE ++S P RRF K+HANLK LP G+A+G+KVIYVARNPKD +VSL H   N+Q   F  + SDMIR FV+GRCENGSWFNHVLEWWEAA ADPEH+LF+ YE +L   E SIRKIA F  I HTPE IAKT  AST +AM+QN K N   G  H RKGGAGGWRD+++VRESEAFD+IY  +M+G+GLKMDFGEGLVM
Sbjct:  137 AKGWTLEKIKSNPERRFFKSHANLKQLPVGTAKGVKVIYVARNPKDVSVSLYHHVRNKQRDVFDGDESDMIRCFVKGRCENGSWFNHVLEWWEAAQADPEHVLFLHYENLLKDREGSIRKIAQFAGIEHTPETIAKTIQASTIDAMRQNAKVNTRPGENHFRKGGAGGWRDVYTVRESEAFDQIYMEQMEGTGLKMDFGEGLVM 340          
BLAST of mRNA_H-elongata_contig69926.14638.1 vs. uniprot
Match: A0A6H5K098_9PHAE (AST protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K098_9PHAE)

HSP 1 Score: 268 bits (684), Expect = 1.920e-84
Identity = 127/204 (62.25%), Postives = 156/204 (76.47%), Query Frame = 1
Query:    1 AKNWTLEALRSTPNRRFMKTHANLKDLPAGSAQGLKVIYVARNPKDTAVSLMHMADNRQGAKFR-NFSDMIRFFVQGRCENGSWFNHVLEWWEAANADPEHILFITYEGMLAAPEESIRKIADFIDINHTPEIIAKTTAASTFNAMKQNPKANVWGGNVHMRKGGAGGWRDIFSVRESEAFDKIYRNEMKGSGLKMDFGEGLVM 609
            A NWTL+ + +  ++RF KTHANLKDLP G A G+KVIYV RNPKD  VSL H A N+   ++  +FSDM+ FF +GRCENGSWF+HVLEW EA+ ADPEH++F+ YE +LA P   ++KIADF+ I  TPEII KT AAST +AMK +  AN      H+RKGGAGGWRD+F VRESEAFD++YR +MKGSGL+MDFGEGL M
Sbjct:  117 ATNWTLDKIVANSDKRFFKTHANLKDLPCGKAPGVKVIYVCRNPKDVCVSLQHHATNKPMFQYTGDFSDMLTFFAEGRCENGSWFDHVLEWHEASKADPEHVIFLRYEDILADPPTYVKKIADFVGIETTPEIIEKTVAASTISAMKSSANANTQKEVNHLRKGGAGGWRDVFKVRESEAFDRLYREQMKGSGLEMDFGEGLSM 320          
BLAST of mRNA_H-elongata_contig69926.14638.1 vs. uniprot
Match: D7G0M1_ECTSI (Aryl sulfotransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0M1_ECTSI)

HSP 1 Score: 262 bits (669), Expect = 9.140e-83
Identity = 130/203 (64.04%), Postives = 151/203 (74.38%), Query Frame = 1
Query:    1 AKNWTLEALRSTPNRRFMKTHANLKDLPAGSAQGLKVIYVARNPKDTAVSLMHMADNRQGAKFR-NFSDMIRFFVQGRCENGSWFNHVLEWWEAANADPEHILFITYEGMLAAPEESIRKIADFIDINHTPEIIAKTTAASTFNAMKQNPKANVWGGNVHMRKGGAGGWRDIFSVRESEAFDKIYRNEMKGSGLKMDFGEGLV 606
            A+NWTL+ L+STPNRRFMK+HANL DLP GSA GLKVIYVARNPKD  VSL H   N+    F  + SDMIR FVQGR  NG WF+HVLEWWEAANADPEHILF+ YE MLA P+E IRKIADF  I HTP+I+AK               AN++    H+RKGGAGGWRD F+  ESEAFD+IY  +M+GSGL+MDFG+GL+
Sbjct:   90 AQNWTLDKLKSTPNRRFMKSHANLTDLPVGSAMGLKVIYVARNPKDVVVSLYHHIKNKCPHTFSGDMSDMIRCFVQGREMNGPWFDHVLEWWEAANADPEHILFLHYEAMLAEPQEHIRKIADFAGIKHTPDILAK---------------ANIYNSKKHLRKGGAGGWRDAFTKVESEAFDRIYEEQMEGSGLQMDFGDGLI 277          
BLAST of mRNA_H-elongata_contig69926.14638.1 vs. uniprot
Match: F0YEU1_AURAN (Sulfotransfer_1 domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YEU1_AURAN)

HSP 1 Score: 200 bits (509), Expect = 6.800e-59
Identity = 96/204 (47.06%), Postives = 136/204 (66.67%), Query Frame = 1
Query:    1 AKNWTLEALRSTPNRRFMKTHANLKDLPAGSAQGLKVIYVARNPKDTAVSLMHMADNRQGAKFR-NFSDMIRFFVQGRCENGSWFNHVLEWWEAANADPEHILFITYEGMLAAPEESIRKIADFIDINHTPEIIAKTTAASTFNAMKQNPKANVWGGNVHMRKGGAGGWRDIFSVRESEAFDKIYRNEMKGSGLKMDFGEGLVM 609
            A  +TLE++ +  + RF K+HA   DLP G A G+KVI +ARNPKDT VSL H A ++    ++ +F+  ++ F+ G  ENGSWF HV+EW  A+ ADP+H+L++TYE M+     S+ KIA F+ +    +++AKT A ST  +M+ N KAN+  G  H+RKGG GGWRD F+V +S  FD +Y  +M G+GL  +FGEGL M
Sbjct:   64 APGYTLESIDAMADPRFFKSHATFGDLPRGKAPGVKVIAIARNPKDTVVSLFHHASSKPEFGYKGDFTTFLKVFLSGNAENGSWFKHVVEWHAASRADPDHVLWLTYEAMIDDHAGSVAKIAAFLGLPDAGDVVAKTVANSTMKSMQANKKANI--GMNHLRKGGVGGWRDYFTVTQSNLFDAVYAQKMAGTGLAFNFGEGLTM 265          
BLAST of mRNA_H-elongata_contig69926.14638.1 vs. uniprot
Match: A0A6S9GU12_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9GU12_HETAK)

HSP 1 Score: 201 bits (510), Expect = 4.100e-58
Identity = 102/206 (49.51%), Postives = 138/206 (66.99%), Query Frame = 1
Query:   13 TLEALRSTPNRRFMKTHANLKDLPAGSAQGLKVIYVARNPKDTAVSLMHMADNRQGAKFR-NFSDMIRFFVQGRCENGSWFNHVLEWWEAANADPEHILFITYEGMLAAPEESIRKIADFIDINHTPEIIAKTTAASTFNAMKQNP------KANVWGGNVHMRKGGAGGWRDIFSVRESEAFDKIYRNEMKGSGLKMDFGEGLVM 609
            T+E++  T   R+ KTHANL+DLP  S+   KVIYVARNPKD  VSL+H A ++    F  NFS M+ +F++G CENGSWF HVL+W+  +  +P ++LF+ YE M A P  +I+KIADF+++++TPE+I K T  S+   M+ N       KA +     H RKGGAGGW D F+VR+S AFD +YR  M+GSGL  +FG  LVM
Sbjct:  138 TVESIMETEGPRYFKTHANLQDLPGRSSANPKVIYVARNPKDVVVSLLHHAKDKPCFHFNGNFSKMLHYFMEGNCENGSWFKHVLDWYNESKQNP-NVLFLKYEDMTADPPGAIKKIADFLEMDYTPELIQKVTEKSSLKFMQSNTVNAEMKKAGI---KSHFRKGGAGGWVDHFNVRQSAAFDAVYRELMRGSGLTFNFGGDLVM 339          
BLAST of mRNA_H-elongata_contig69926.14638.1 vs. uniprot
Match: D8LJX4_ECTSI (Aryl sulfotransferase, C-terminal n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJX4_ECTSI)

HSP 1 Score: 187 bits (475), Expect = 1.130e-55
Identity = 85/124 (68.55%), Postives = 105/124 (84.68%), Query Frame = 1
Query:  238 NGSWFNHVLEWWEAANADPEHILFITYEGMLAAPEESIRKIADFIDINHTPEIIAKTTAASTFNAMKQNPKANVWGGNVHMRKGGAGGWRDIFSVRESEAFDKIYRNEMKGSGLKMDFGEGLVM 609
            NG WF+HVLEW EAANADPEHI+F+ YE MLA P+E IRKIA+F  IN+TP+I+AK  AAS+ +AMK+NPK N++    H+RKGGAGGWRD F+VRES AFD++YR +M+GSGL+MDFGEGLVM
Sbjct:    5 NGPWFDHVLEWREAANADPEHIMFLHYEAMLAEPQEHIRKIAEFAGINYTPDILAKADAASSLSAMKRNPKTNLYPSKKHLRKGGAGGWRDSFTVRESAAFDEVYREQMEGSGLRMDFGEGLVM 128          
BLAST of mRNA_H-elongata_contig69926.14638.1 vs. uniprot
Match: A0A7S2XZC3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZC3_9STRA)

HSP 1 Score: 193 bits (491), Expect = 2.740e-55
Identity = 103/199 (51.76%), Postives = 130/199 (65.33%), Query Frame = 1
Query:   13 TLEALRSTPNRRFMKTHANLKDLPAGSAQGLKVIYVARNPKDTAVSLMHMADNRQGAKFR-NFSDMIRFFVQGRCENGSWFNHVLEWWEAANADPEHILFITYEGMLAAPEESIRKIADFIDINHTPEIIAKTTAASTFNAMKQNP----KANVWGGNVHMRKGGAGGWRDIFSVRESEAFDKIYRNEMKGSGLKMDFG 594
            TLE +R     RF KTHANL DLP G A   KVIYVARNPKD  VSL H A ++   +F  +FS M+  FV+G  ENGSWF HVLEW E +    + ILF+ YE M+A P   + KIA FI ++ TPE+IA     ++ NAMK+N     +   +G N H+RKGGAGGW++ F+VR+SEAFD IY   MK +GL+ DFG
Sbjct:  139 TLETVRDLEGPRFFKTHANLGDLPKGQASP-KVIYVARNPKDVVVSLFHHAKDKPCFQFNGDFSKMLHMFVEGNAENGSWFKHVLEWHEESKKS-DRILFLQYEAMMADPATHVEKIARFIGLDPTPELIATVVEKTSINAMKKNAAVTDQMKKFGINAHIRKGGAGGWKNWFTVRQSEAFDSIYTEIMKDTGLQFDFG 335          
BLAST of mRNA_H-elongata_contig69926.14638.1 vs. uniprot
Match: A0A6V1XC27_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1XC27_HETAK)

HSP 1 Score: 191 bits (486), Expect = 8.060e-55
Identity = 93/200 (46.50%), Postives = 133/200 (66.50%), Query Frame = 1
Query:   13 TLEALRSTPNRRFMKTHANLKDLPAGSAQ--GLKVIYVARNPKDTAVSLMHMADNRQGAKFR-NFSDMIRFFVQGRCENGSWFNHVLEWWEAANADPEHILFITYEGMLAAPEESIRKIADFIDINHTPEIIAKTTAASTFNAMKQNPKANVWGGNVHMRKGGAGGWRDIFSVRESEAFDKIYRNEMKGSGLKMDFGEGL 603
            TLE++ +    RF K+HA L +LP G A   GLKV+YVARNPKDT VSL H A N+    +  +F   +  F+ G CENGSWF+HVL+WW  +  +P ++LF+ YE MLA P  ++ +IA+F  ++ +P  +AKT   S+   MK++ +AN      H+RKGG+GGW+D F+V  +E FD+IY  +M+GSGL  DFG+G+
Sbjct:  116 TLESIATMDGPRFFKSHATLANLPRGRAPAPGLKVLYVARNPKDTVVSLYHHAKNKPEFGYTGDFKTFVELFLAGACENGSWFSHVLDWWAESQRNP-NVLFLKYEDMLADPAAAVARIAEFCALDASPAAVAKTVQNSSMKKMKESAQANALAAFNHLRKGGSGGWKDSFTVATNELFDQIYAKKMEGSGLTFDFGDGV 314          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig69926.14638.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LHM0_ECTSI2.170e-9769.61Aryl sulfotransferase n=1 Tax=Ectocarpus siliculos... [more]
D8LJX5_ECTSI4.170e-9469.12Aryl sulfotransferase, C-terminal Aryl sulfotransf... [more]
D7G187_ECTSI8.700e-9167.65Aryl sulfotransferase n=2 Tax=Ectocarpus TaxID=287... [more]
A0A6H5K098_9PHAE1.920e-8462.25AST protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D7G0M1_ECTSI9.140e-8364.04Aryl sulfotransferase n=1 Tax=Ectocarpus siliculos... [more]
F0YEU1_AURAN6.800e-5947.06Sulfotransfer_1 domain-containing protein n=1 Tax=... [more]
A0A6S9GU12_HETAK4.100e-5849.51Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
D8LJX4_ECTSI1.130e-5568.55Aryl sulfotransferase, C-terminal n=1 Tax=Ectocarp... [more]
A0A7S2XZC3_9STRA2.740e-5551.76Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A6V1XC27_HETAK8.060e-5546.50Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig69926contigH-elongata_contig69926:1221..3199 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score273.5
Seed ortholog evalue7.4e-71
Seed eggNOG ortholog2880.D8LHM0
KEGG koko:K01025
EggNOG free text desc.sulfotransferase activity
EggNOG OGsKOG1584@1,KOG1584@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Hectar predicted targeting categoryother localisation
Exons4
Model size1084
Cds size561
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig69926.14638.1prot_H-elongata_contig69926.14638.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig69926 1693..3148 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931096.4937634-UTR-H-elongata_contig69926:1220..16921622931096.4937634-UTR-H-elongata_contig69926:1220..1692Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig69926 1221..1692 -
1691679696.360056-UTR-H-elongata_contig69926:1220..16921691679696.360056-UTR-H-elongata_contig69926:1220..1692Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig69926 1221..1692 -
1622931096.5784044-UTR-H-elongata_contig69926:3148..31991622931096.5784044-UTR-H-elongata_contig69926:3148..3199Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig69926 3149..3199 -
1691679696.4174967-UTR-H-elongata_contig69926:3148..31991691679696.4174967-UTR-H-elongata_contig69926:3148..3199Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig69926 3149..3199 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931096.51862-CDS-H-elongata_contig69926:1692..18991622931096.51862-CDS-H-elongata_contig69926:1692..1899Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69926 1693..1899 -
1691679696.3723283-CDS-H-elongata_contig69926:1692..18991691679696.3723283-CDS-H-elongata_contig69926:1692..1899Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69926 1693..1899 -
1622931096.5384028-CDS-H-elongata_contig69926:2303..24781622931096.5384028-CDS-H-elongata_contig69926:2303..2478Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69926 2304..2478 -
1691679696.386758-CDS-H-elongata_contig69926:2303..24781691679696.386758-CDS-H-elongata_contig69926:2303..2478Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69926 2304..2478 -
1622931096.5531497-CDS-H-elongata_contig69926:2645..27671622931096.5531497-CDS-H-elongata_contig69926:2645..2767Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69926 2646..2767 -
1691679696.397437-CDS-H-elongata_contig69926:2645..27671691679696.397437-CDS-H-elongata_contig69926:2645..2767Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69926 2646..2767 -
1622931096.5666919-CDS-H-elongata_contig69926:3091..31481622931096.5666919-CDS-H-elongata_contig69926:3091..3148Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69926 3092..3148 -
1691679696.4089973-CDS-H-elongata_contig69926:3091..31481691679696.4089973-CDS-H-elongata_contig69926:3091..3148Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69926 3092..3148 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig69926.14638.1

>prot_H-elongata_contig69926.14638.1 ID=prot_H-elongata_contig69926.14638.1|Name=mRNA_H-elongata_contig69926.14638.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=187bp
MKTHANLKDLPAGSAQGLKVIYVARNPKDTAVSLMHMADNRQGAKFRNFS
DMIRFFVQGRCENGSWFNHVLEWWEAANADPEHILFITYEGMLAAPEESI
RKIADFIDINHTPEIIAKTTAASTFNAMKQNPKANVWGGNVHMRKGGAGG
WRDIFSVRESEAFDKIYRNEMKGSGLKMDFGEGLVM*
back to top

mRNA from alignment at H-elongata_contig69926:1221..3199-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig69926.14638.1 ID=mRNA_H-elongata_contig69926.14638.1|Name=mRNA_H-elongata_contig69926.14638.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1979bp|location=Sequence derived from alignment at H-elongata_contig69926:1221..3199- (Himanthalia elongata Himel1 dioecious)
GCAAAAAACTGGACGCTGGAAGCACTGAGGTCGACACCAAACAGGCGCTT CATGAAAACGCACGCCAACTTGAAGGACTTGCCCGCGGGATCTGCTCAGG GTCTGAAGGTCAGGTTGAATACGGGAAAGTGATAGAAGTTCATCAATTCC GTCTGCCGGCATATTTGTGTATATTTTCGATGGTCAAGCCCAAGGCATCA TTAGGGAAAAATATAGCGGACATCATACGCGCCCAATACTCGCCATGAAG GAGTCAGTGATAAACAATAAAACATTCTTGAATCAGTGTAGCAACTCGTA CCGAGGAAAAGCCAATCAAATCGTCTAGGCCTATAGGAACAATGTGCGGC GTCTACAGTCCCCTCATTCATGGATCTTGACCAATCGCCGTTGGCCGCCC TCAAGTCTTTTCCCTGAACTTTCCTGTGTCAGGTAATCTATGTCGCGCGG AACCCGAAGGATACAGCAGTCAGTCTCATGCACATGGCTGACAACAGACA AGGCGCGAAATTTCGCAATTTCTCCGACATGATCCGATTCTTCGTTCAGG GAAGGTGAATCAAAAAGGTTCATGGAAATGCTTCATTTTGGCGAGGGTAC CGATCAACTCATACCCTTGTACCCGTTTTAAGAATTACTTTCGCCGTAGA TAATAAAAAAGTAACGTTTTACGCTTTTTGTTTGAAGTTTGAAGTGAATC GATCGATGATGGGGTACCCAGGTGCGAGAACGGATCGTGGTTTAACCACG TACTCGAGTGGTGGGAGGCCGCCAACGCCGACCCTGAACACATTTTATTC ATCACGTATGAGGGTATGCTAGCGGCGCCTGAGGAGAGCATCCGCAAAAT CGCAGACTTCATTGACATCAACCACACGCCGGAGATTATTGCTAAGGTCA GCTAGCCCTCACTCCGCAATCGACCATTAGGCGCAGAGATAAACACTCGA AAACCGTTGTGCCATGGGTATGCGCTGAAAAAACACCTGTGGTTAGAGGT AAGTTGGCAATCATGGACATGCATGTCTAATTGGAAATACCATTCCAAGC AAAATAGTGTTTGTATCCTCCGTCAATAACAAAAATGCCGACGAAAACCG GATGGATGAAATCGTTTGTCGTCCCTGTACCGTTTGGGATTCTCTGGTTT TACGGCTGCCGCTTCATTGATCGAACCGGGTTACACATGTTTTTATCAAG CAGGATAAGTATTTGTTACGCGCAGTGCTGAGGTTGCGTTGCCCTAGAAG CTTGACGATTGAATATCCCTCAAGTTGCGCCATTCGTCTTGTGCTTGCAG ACCACCGCCGCGTCGACCTTTAATGCCATGAAGCAAAACCCAAAGGCAAA CGTCTGGGGTGGCAATGTCCACATGCGTAAAGGTGGAGCTGGAGGATGGC GAGACATTTTTTCAGTCCGGGAGTCGGAGGCGTTTGACAAGATCTACAGG AATGAAATGAAAGGATCTGGCCTCAAGATGGATTTCGGGGAAGGGTTGGT AATGTAGACGGAAAATGTTGCCGCATTTTAGTTCGAGTTGCATTCTATCT CGTTCGCTCCTCCTGGCTATCTGGCTATCATACCTCATACACCTATAGCT GAGCGGTTTTTGACCTCAATACGCAATGAGTGTGAGAATTCGCTACCATG GCACCACACCGATGCTCTTGGGACGTGGGTGCGTCTCAGATATGGTTAGA GCGGAAAATAAGTATAGTTCCGTTTGCAGTAAAAACAGAGTGTGCTGATG CCGAAAAACGGATAAGGGTTATGACACCGAAGGATTAATGATTTAGAAAC GCCAAACGGTAACGATTTTGTGATTTGGAAATCCACGAGCTAGCCACAAC GTTTAACAAGGTTTTCATGAAATTGAGAATGAGTGAATTATTAGATTGAG AGTGAGAACCTAAAATAATTGCAAATTCTCATAGTTTTATCAAATGTCAT TTCGTGGGGAATCCTGTACCGAGCACGTC
back to top

Coding sequence (CDS) from alignment at H-elongata_contig69926:1221..3199-

>mRNA_H-elongata_contig69926.14638.1 ID=mRNA_H-elongata_contig69926.14638.1|Name=mRNA_H-elongata_contig69926.14638.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1122bp|location=Sequence derived from alignment at H-elongata_contig69926:1221..3199- (Himanthalia elongata Himel1 dioecious)
ATGAAAACGCACGCCAACTTGAAGGACTTGCCCGCGGGATCTGCTCAGGG
TCTGAAGATGAAAACGCACGCCAACTTGAAGGACTTGCCCGCGGGATCTG
CTCAGGGTCTGAAGGTAATCTATGTCGCGCGGAACCCGAAGGATACAGCA
GTCAGTCTCATGCACATGGCTGACAACAGACAAGGCGCGAAATTTCGCAA
TTTCTCCGACATGATCCGATTCTTCGTTCAGGGAAGGTAATCTATGTCGC
GCGGAACCCGAAGGATACAGCAGTCAGTCTCATGCACATGGCTGACAACA
GACAAGGCGCGAAATTTCGCAATTTCTCCGACATGATCCGATTCTTCGTT
CAGGGAAGGTGCGAGAACGGATCGTGGTTTAACCACGTACTCGAGTGGTG
GGAGGCCGCCAACGCCGACCCTGAACACATTTTATTCATCACGTATGAGG
GTATGCTAGCGGCGCCTGAGGAGAGCATCCGCAAAATCGCAGACTTCATT
GACATCAACCACACGCCGGAGATTATTGCTAAGGTGCGAGAACGGATCGT
GGTTTAACCACGTACTCGAGTGGTGGGAGGCCGCCAACGCCGACCCTGAA
CACATTTTATTCATCACGTATGAGGGTATGCTAGCGGCGCCTGAGGAGAG
CATCCGCAAAATCGCAGACTTCATTGACATCAACCACACGCCGGAGATTA
TTGCTAAGACCACCGCCGCGTCGACCTTTAATGCCATGAAGCAAAACCCA
AAGGCAAACGTCTGGGGTGGCAATGTCCACATGCGTAAAGGTGGAGCTGG
AGGATGGCGAGACATTTTTTCAGTCCGGGAGTCGGAGGCGTTTGACAAGA
TCTACAGGAATGAAATGAAAGGATCTGGCCTCAAGATGGATTTCGGGGAA
GGGTTGGTAATGTAGACCACCGCCGCGTCGACCTTTAATGCCATGAAGCA
AAACCCAAAGGCAAACGTCTGGGGTGGCAATGTCCACATGCGTAAAGGTG
GAGCTGGAGGATGGCGAGACATTTTTTCAGTCCGGGAGTCGGAGGCGTTT
GACAAGATCTACAGGAATGAAATGAAAGGATCTGGCCTCAAGATGGATTT
CGGGGAAGGGTTGGTAATGTAG
back to top