mRNA_H-elongata_contig6989.14637.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig6989.14637.1
Unique NamemRNA_H-elongata_contig6989.14637.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig6989.14637.1 vs. uniprot
Match: D7FVZ9_ECTSI (Poly [ADP-ribose] polymerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVZ9_ECTSI)

HSP 1 Score: 90.5 bits (223), Expect = 1.240e-15
Identity = 45/83 (54.22%), Postives = 60/83 (72.29%), Query Frame = 1 
Query:  355 ARTPFSRTNYDARPL---QMIMAKVLVGEFTKGNKSMARPPRMNCLSNDQLYDSTTDNDHSPTVVVTYTDWQAYPMYLITFGP 594
            AR       Y A+P    QMIMAKVLVGEF +G+ SM  PP+M   + ++ YD+TT++D++P+++VTY DWQAYPMYLITF P
Sbjct:  580 ARDALLAAQYMAKPPCGGQMIMAKVLVGEFVRGDASMLIPPKMG--TGERHYDTTTNDDYAPSLIVTYKDWQAYPMYLITFAP 660
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BLAST of mRNA_H-elongata_contig6989.14637.1 vs. uniprot
Match: H3DNG3_TETNG (Poly [ADP-ribose] polymerase n=1 Tax=Tetraodon nigroviridis TaxID=99883 RepID=H3DNG3_TETNG)

HSP 1 Score: 69.7 bits (169), Expect = 4.400e-9
Identity = 32/63 (50.79%), Postives = 45/63 (71.43%), Query Frame = 1 
Query:  400 QMIMAKVLVGEFTKGNKSMARPPRMNCLSNDQLYDSTTDNDHSPTVVVTYTDWQAYPMYLITF 588
            +M +A+VLVG+FTKG +S+A PP  +      LYDS TDN+ +P++ V + D QAYP +LITF
Sbjct:  435 RMYLARVLVGDFTKGQQSIAAPPARDQARPSDLYDSVTDNEATPSMFVIFHDAQAYPEFLITF 497
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BLAST of mRNA_H-elongata_contig6989.14637.1 vs. uniprot
Match: A0A7D9JCW8_PARCT (Poly [ADP-ribose] polymerase (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9JCW8_PARCT)

HSP 1 Score: 69.7 bits (169), Expect = 5.370e-9
Identity = 34/69 (49.28%), Postives = 45/69 (65.22%), Query Frame = 1 
Query:  385 DARPLQ-MIMAKVLVGEFTKGNKSMARPPRMNCLSNDQLYDSTTDNDHSPTVVVTYTDWQAYPMYLITF 588
            D+R L+ M  A+VLVG++TKGN SM  PP  N     + YDS  DN  +PT+ VT+ D++ Y  YLITF
Sbjct:  558 DSRGLRYMYYARVLVGDYTKGNSSMLVPPNKNTADTYETYDSVVDNTANPTIYVTFQDYEYYTEYLITF 626
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BLAST of mRNA_H-elongata_contig6989.14637.1 vs. uniprot
Match: A0A672TCU9_SINGR (Poly [ADP-ribose] polymerase n=7 Tax=Sinocyclocheilus TaxID=75365 RepID=A0A672TCU9_SINGR)

HSP 1 Score: 67.4 bits (163), Expect = 7.200e-9
Identity = 33/63 (52.38%), Postives = 42/63 (66.67%), Query Frame = 1 
Query:  400 QMIMAKVLVGEFTKGNKSMARPPRMNCLSNDQLYDSTTDNDHSPTVVVTYTDWQAYPMYLITF 588
            +M +AKVLVGEFTKG K +  PP+ +      LYDS TD   +P++ V + D QAYP YLITF
Sbjct:  208 RMYLAKVLVGEFTKGKKGLRTPPKRSSKGV-HLYDSVTDKTKNPSMFVVFNDVQAYPEYLITF 269
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BLAST of mRNA_H-elongata_contig6989.14637.1 vs. uniprot
Match: A0A3M6U319_POCDA (Poly [ADP-ribose] polymerase (Fragment) n=2 Tax=Pocillopora damicornis TaxID=46731 RepID=A0A3M6U319_POCDA)

HSP 1 Score: 69.3 bits (168), Expect = 9.970e-9
Identity = 32/62 (51.61%), Postives = 41/62 (66.13%), Query Frame = 1 
Query:  403 MIMAKVLVGEFTKGNKSMARPPRMNCLSNDQLYDSTTDNDHSPTVVVTYTDWQAYPMYLITF 588
            M +AKVLVGE+  G +SM  PP  N    + LYDS  DN  SP++ V ++D+Q YP YLITF
Sbjct: 1444 MYLAKVLVGEYCIGKRSMVAPPPKNPSKPEILYDSMVDNQSSPSIFVVFSDYQCYPEYLITF 1505
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BLAST of mRNA_H-elongata_contig6989.14637.1 vs. uniprot
Match: UPI00148F52D9 (protein mono-ADP-ribosyltransferase PARP14-like isoform X1 n=2 Tax=Notolabrus celidotus TaxID=1203425 RepID=UPI00148F52D9)

HSP 1 Score: 69.3 bits (168), Expect = 1.040e-8
Identity = 31/63 (49.21%), Postives = 42/63 (66.67%), Query Frame = 1 
Query:  400 QMIMAKVLVGEFTKGNKSMARPPRMNCLSNDQLYDSTTDNDHSPTVVVTYTDWQAYPMYLITF 588
            +M +AKVLVG+ TKG++ +  PP  N  +   LYDS TDN + PT+ + + D  AYP YLITF
Sbjct: 1837 RMYLAKVLVGDHTKGSRGLLTPPSKNSGNASDLYDSVTDNTNPPTMFIVFNDSHAYPEYLITF 1899
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BLAST of mRNA_H-elongata_contig6989.14637.1 vs. uniprot
Match: A0A673KEP4_9TELE (Poly [ADP-ribose] polymerase n=1 Tax=Sinocyclocheilus rhinocerous TaxID=307959 RepID=A0A673KEP4_9TELE)

HSP 1 Score: 67.4 bits (163), Expect = 1.380e-8
Identity = 33/63 (52.38%), Postives = 43/63 (68.25%), Query Frame = 1 
Query:  400 QMIMAKVLVGEFTKGNKSMARPPRMNCLSNDQLYDSTTDNDHSPTVVVTYTDWQAYPMYLITF 588
            +M +AKVLVGEFTKG K +  PP+ +    + LYDS TD   +P++ V + D QAYP YLITF
Sbjct:  283 RMYLAKVLVGEFTKGKKGLRTPPKRSSKGVN-LYDSVTDKTKNPSMFVVFNDVQAYPEYLITF 344
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BLAST of mRNA_H-elongata_contig6989.14637.1 vs. uniprot
Match: A0A8M6Z8E6_DANRE (poly [ADP-ribose] polymerase 14 isoform X1 n=1 Tax=Danio rerio TaxID=7955 RepID=A0A8M6Z8E6_DANRE)

HSP 1 Score: 68.6 bits (166), Expect = 1.660e-8
Identity = 34/63 (53.97%), Postives = 45/63 (71.43%), Query Frame = 1 
Query:  400 QMIMAKVLVGEFTKGNKSMARPPRMNCLSNDQLYDSTTDNDHSPTVVVTYTDWQAYPMYLITF 588
            +M +AKVLVG+FT+GN  +  PP  +  S D LY+S TDN ++PT+ V + D QAYP YLITF
Sbjct: 1160 RMYLAKVLVGDFTRGNPGLLVPPAKSSSSAD-LYNSVTDNVNNPTMFVIFNDVQAYPEYLITF 1221
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BLAST of mRNA_H-elongata_contig6989.14637.1 vs. uniprot
Match: A0A2R8Q9E4_DANRE (Poly [ADP-ribose] polymerase n=4 Tax=Danio rerio TaxID=7955 RepID=A0A2R8Q9E4_DANRE)

HSP 1 Score: 68.6 bits (166), Expect = 1.800e-8
Identity = 34/63 (53.97%), Postives = 45/63 (71.43%), Query Frame = 1 
Query:  400 QMIMAKVLVGEFTKGNKSMARPPRMNCLSNDQLYDSTTDNDHSPTVVVTYTDWQAYPMYLITF 588
            +M +AKVLVG+FT+GN  +  PP  +  S D LY+S TDN ++PT+ V + D QAYP YLITF
Sbjct: 1735 RMYLAKVLVGDFTRGNPGLLVPPAKSSSSAD-LYNSVTDNVNNPTMFVIFNDVQAYPEYLITF 1796
[Close]
BLAST of mRNA_H-elongata_contig6989.14637.1 vs. uniprot
Match: A0A6J2WXF0_CHACN (Poly [ADP-ribose] polymerase n=1 Tax=Chanos chanos TaxID=29144 RepID=A0A6J2WXF0_CHACN)

HSP 1 Score: 67.8 bits (164), Expect = 3.160e-8
Identity = 32/63 (50.79%), Postives = 43/63 (68.25%), Query Frame = 1 
Query:  400 QMIMAKVLVGEFTKGNKSMARPPRMNCLSNDQLYDSTTDNDHSPTVVVTYTDWQAYPMYLITF 588
            +M +A+VLVG++TKG   M  PP  N  +   LYDS TDN ++P++ V + D QAYP YLITF
Sbjct: 1813 RMYLARVLVGDYTKGAGGMLVPPAKNSGNAADLYDSVTDNPNNPSMFVIFNDVQAYPEYLITF 1875
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6989.14637.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVZ9_ECTSI1.240e-1554.22Poly [ADP-ribose] polymerase n=2 Tax=Ectocarpus Ta... [more]
H3DNG3_TETNG4.400e-950.79Poly [ADP-ribose] polymerase n=1 Tax=Tetraodon nig... [more]
A0A7D9JCW8_PARCT5.370e-949.28Poly [ADP-ribose] polymerase (Fragment) n=1 Tax=Pa... [more]
A0A672TCU9_SINGR7.200e-952.38Poly [ADP-ribose] polymerase n=7 Tax=Sinocyclochei... [more]
A0A3M6U319_POCDA9.970e-951.61Poly [ADP-ribose] polymerase (Fragment) n=2 Tax=Po... [more]
UPI00148F52D91.040e-849.21protein mono-ADP-ribosyltransferase PARP14-like is... [more]
A0A673KEP4_9TELE1.380e-852.38Poly [ADP-ribose] polymerase n=1 Tax=Sinocyclochei... [more]
A0A8M6Z8E6_DANRE1.660e-853.97poly [ADP-ribose] polymerase 14 isoform X1 n=1 Tax... [more]
A0A2R8Q9E4_DANRE1.800e-853.97Poly [ADP-ribose] polymerase n=4 Tax=Danio rerio T... [more]
A0A6J2WXF0_CHACN3.160e-850.79Poly [ADP-ribose] polymerase n=1 Tax=Chanos chanos... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig6989contigH-elongata_contig6989:4226..6103 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score87.8
Seed ortholog evalue2e-15
Seed eggNOG ortholog2880.D7FVZ9
KEGG koko:K15261
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005911,GO:0008150,GO:0009506,GO:0010035,GO:0010038,GO:0016740,GO:0016757,GO:0030054,GO:0042221,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0046686,GO:0050896,GO:0055044
EggNOG free text desc.ADP-D-ribose binding
EggNOG OGsCOG2110@1,KOG2633@2759
Ec32 ortholog descriptionPoly(ADP-ribose) polymerase, catalytic domain
Ec32 orthologEc-01_002790.1
EC2.4.2.30
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Hectar predicted targeting categoryother localisation
Exons2
Model size1396
Cds size195
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig6989.14637.1prot_H-elongata_contig6989.14637.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig6989 5025..5701 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931096.3925176-UTR-H-elongata_contig6989:4225..50241622931096.3925176-UTR-H-elongata_contig6989:4225..5024Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6989 4226..5024 -
1691679696.3102949-UTR-H-elongata_contig6989:4225..50241691679696.3102949-UTR-H-elongata_contig6989:4225..5024Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6989 4226..5024 -
1622931096.444605-UTR-H-elongata_contig6989:5701..61031622931096.444605-UTR-H-elongata_contig6989:5701..6103Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6989 5702..6103 -
1691679696.34929-UTR-H-elongata_contig6989:5701..61031691679696.34929-UTR-H-elongata_contig6989:5701..6103Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6989 5702..6103 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931096.4099047-CDS-H-elongata_contig6989:5024..50811622931096.4099047-CDS-H-elongata_contig6989:5024..5081Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6989 5025..5081 -
1691679696.3224914-CDS-H-elongata_contig6989:5024..50811691679696.3224914-CDS-H-elongata_contig6989:5024..5081Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6989 5025..5081 -
1622931096.4282348-CDS-H-elongata_contig6989:5563..57011622931096.4282348-CDS-H-elongata_contig6989:5563..5701Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6989 5564..5701 -
1691679696.3325803-CDS-H-elongata_contig6989:5563..57011691679696.3325803-CDS-H-elongata_contig6989:5563..5701Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6989 5564..5701 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig6989.14637.1

>prot_H-elongata_contig6989.14637.1 ID=prot_H-elongata_contig6989.14637.1|Name=mRNA_H-elongata_contig6989.14637.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=65bp
MIMAKVLVGEFTKGNKSMARPPRMNCLSNDQLYDSTTDNDHSPTVVVTYT
DWQAYPMYLITFGP*
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mRNA from alignment at H-elongata_contig6989:4226..6103-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig6989.14637.1 ID=mRNA_H-elongata_contig6989.14637.1|Name=mRNA_H-elongata_contig6989.14637.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1878bp|location=Sequence derived from alignment at H-elongata_contig6989:4226..6103- (Himanthalia elongata Himel1 dioecious)
GACAGGAATTTGTTTTTTGCAAGTCGTATTAGAGGACACGTTAGAAACTC
TCCTGTTAACCACAAAAACCAGTACACGGAAACGCCTGCTAGGAGTTCGC
TGTCTTCGCAATGGGGTAGATTTCGTCATCATGGGGGATGTCCCCTTGAG
CATGAGACTGGTTCATAATACCTTCTGTCCCTTGCCACTGTTCCTCCTTA
TGGAACGGCTGAATGAGCAGCATGATAATGATGCATAGACCTCGCCCGTG
ATCCGAAGTATCTCGCCCTTAGATAGATGCGGTGATACCCTCGTCTGCAG
AGGTGTTTCTTTCAACGGGTATCCTCAGCCTGTGTGTGTCGACCCCGCAA
CCAGGCGCGGACACCCTTTTCCAGAACGAATTACGACGCGCGCCCCCTGC
AGATGATTATGGCGAAGGTGCTGGTCGGCGAATTCACAAAGGGGAACAAA
TCAATGGCTAGGCCGCCGAGAATGAACTGCCTCAGTAACGATCAATTATA
CGATTCCACCACCGACAATGATCACTCCCCGACGGTCGTTGTGAGTGCGC
TTGACGAGCAACGCCCTTTCGAGTGGTTCCTGGGAAGGCTTTGGAAGGGG
GGGGGGGGGGCGTGGAGGGAAAGCAGGCACAACAGGCAACGTCGCACTGC
GCAGACTAGAGGCATCTGCTGCTTGTGTTTTTCCCACACGAAAGTGACAG
TTCAGTTCGTGGATATTCCACGTTTGCCGCATCTAGGGATAATTGGAATT
TTCCCCCGACATAATAACAGCAGCGCGCGTTCCACGTACCGAGGGAGGCA
TGCGTAGACGGGGGGAAGGGTGTCGGGAATGTCCCTACGCGATTCCGCTT
AACCACTCGCTGAAATACCTGATTGTACTGTATTAAACATATCTCCGTGT
AACATCCACGTGCCGCGTTGATGAGGTTATTGGGGTTTGTCTCATTCAGC
TACAAAAAGCTCCACGCAGACGGATGTCGATCTTATCACCACCCCCACTC
CTTGCCGGGATGGGTAACGCAGGTGACGTACACAGATTGGCAAGCCTATC
CTATGTACCTCATTACGTTCGGTCCCTAGTGGTGGGGCTGCCGAAGATCA
TCCCGTCGAAGAAGTGGTCGCAGAATTGAGTGCAAGACTCAAGATTACGC
CCCCCTGGGCATTAGCAACAATGGAAGGGGACGTCAGTTTGCGGCAGGAT
TTTCGTACAAGCGGACTGTAGAGTTGATTCGTTCGTGGCAGCTTCTACAA
CATCGATATGAATCGTCTGGCACCACGTTGATGATGACACATCGTCCTTG
CTCTCTTCCACCATGCTCTCGCCAAGATCGAGGCTCGCGAGTGGTGTCGA
GGTCGTAGTCAGTGAGATCTATTTCTGGTGTACGTGTTTCTGTCGAAGGC
GTCTTCTTCGTAGCAGTGCTGGAGCTCTGGCGACGGGGGAAGCTGGACGT
CCCTCGCCCTCTGCCGCTGCTCACTTCGGTTGCTTGTTTTAGTTTCATTT
TCGGCCGACGAGGTCATTCAGCGTGCTACACGTTACCAATGCCACTTACT
CCAACCCTTTCATCCCGCCTTCCCATCTCTCTAAGGTTTTGTCGACTGCT
TTACATTTTATTATCACCATGCACGCCAAGCGCTTGATAACACTGTGTTT
CCTAGATTTACGAAGTATTCCGTGGAATAATGTAGAAAGGTCATGAAATA
CCCCCTCTCCCCGCCGTTCACCCTCGGTTTTCCGTGGAATAATGAATAAT
GTATACTGAATAATGTAAACAGAATAATGTACATTGAATAATGTATAATG
AACAATGAATGCTGAATAATGAATGCTGAACAATGAAGGGTAGAAGGACG
GGCTTTGGTTTTCTTGCAAGTTTAACAC
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Coding sequence (CDS) from alignment at H-elongata_contig6989:4226..6103-

>mRNA_H-elongata_contig6989.14637.1 ID=mRNA_H-elongata_contig6989.14637.1|Name=mRNA_H-elongata_contig6989.14637.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=390bp|location=Sequence derived from alignment at H-elongata_contig6989:4226..6103- (Himanthalia elongata Himel1 dioecious)
ATGATTATGGCGAAGGTGCTGGTCGGCGAATTCACAAAGGGGAACAAATC
AATGGCTAGGCCGCCGAGAATGAACTGCCTCAGTAACGATCAATTATACG
ATTCCACCACCGACAATGATCACTCCCCGACGGTCGTTATGATTATGGCG
AAGGTGCTGGTCGGCGAATTCACAAAGGGGAACAAATCAATGGCTAGGCC
GCCGAGAATGAACTGCCTCAGTAACGATCAATTATACGATTCCACCACCG
ACAATGATCACTCCCCGACGGTCGTTGTGACGTACACAGATTGGCAAGCC
TATCCTATGTACCTCATTACGTTCGGTCCCTAGGTGACGTACACAGATTG
GCAAGCCTATCCTATGTACCTCATTACGTTCGGTCCCTAG
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