prot_H-elongata_contig69825.14630.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig69825.14630.1
Unique Nameprot_H-elongata_contig69825.14630.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length297
Homology
[Close]
BLAST of mRNA_H-elongata_contig69825.14630.1 vs. uniprot
Match: D8LI48_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LI48_ECTSI)

HSP 1 Score: 126 bits (317), Expect = 6.710e-29
Identity = 120/289 (41.52%), Postives = 145/289 (50.17%), Query Frame = 0 
Query:   35 GLNRPRYADWGPKLEKLARLLQ--PTRHG--HDHTGEASAGLGPNGGKSNXXXXXXXVVKEXXXXXXXXXPEDYDCSIEALGDAGNADGAACLLRVMRRQGFHASPRAYRSVIYACARVGHLAEAVALAREMESSRKRAPIIVDSNGFPSPRRRQSSYVANRAGEENVSFPRVCFGTQTDADTHVAAGVQTSQSAAADV--EGMD--------------------VVAHGANEALSPQQQLSPPSGLDSAAGKSGAQEEIGDGDESEQREFELDVVYNCIVCNFARSVT 297
            G+NR RY DW P+L  +ARLLQ  P  HG                     XXXXXXX    XXXXXXXX PE+ DCSIEALGDA +A GA  LLRVMRR+GFHASPRAYRSV+YACARVG L EA+ LA+EM+SS   A           P +R        +  ++          +T AD   A G   S  AAA     G++                    V + GA       ++ S  +  D   G  GA  E  DG      EF+L +VYNCI+CNFAR+ T
Sbjct:  572 GINRRRYTDWAPELANIARLLQNGPGSHGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPEELDCSIEALGDADDAGGATNLLRVMRREGFHASPRAYRSVVYACARVGLLDEAMTLAKEMQSSSSSAFAAQRQQADVEPPKRLREQEPPSSFNDDCEVENRSIAEETRADEPPALGDGASLGAAASFAERGLEEETEREARNGGVASELVPRRVPSTGAASGEDCVEEGSLVASNDRGNGNLGAVNEDEDG-----AEFDLAMVYNCIICNFARAAT 855
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig69825.14630.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LI48_ECTSI6.710e-2941.52Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 1..25
e-value: 3.8E-4
score: 18.4
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 138..165
e-value: 0.039
score: 14.2
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 2..31
e-value: 8.1E-4
score: 19.4
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 1..24
score: 8.966
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 135..169
score: 8.747
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 100..134
score: 7.75
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 91..175
e-value: 1.5E-10
score: 42.7
coord: 1..43
e-value: 2.9E-7
score: 31.9

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig69825contigH-elongata_contig69825:414..1304 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig69825.14630.1mRNA_H-elongata_contig69825.14630.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig69825 414..1304 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig69825.14630.1 ID=prot_H-elongata_contig69825.14630.1|Name=mRNA_H-elongata_contig69825.14630.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=297bp
CSQAGHWERALSLLADMRRQGITPSRVTYNAAVAGLNRPRYADWGPKLEK
LARLLQPTRHGHDHTGEASAGLGPNGGKSNQDQDQGAVVKEGGGEGSGPS
PEDYDCSIEALGDAGNADGAACLLRVMRRQGFHASPRAYRSVIYACARVG
HLAEAVALAREMESSRKRAPIIVDSNGFPSPRRRQSSYVANRAGEENVSF
PRVCFGTQTDADTHVAAGVQTSQSAAADVEGMDVVAHGANEALSPQQQLS
PPSGLDSAAGKSGAQEEIGDGDESEQREFELDVVYNCIVCNFARSVT
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf