mRNA_H-elongata_contig69825.14630.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig69825.14630.1
Unique NamemRNA_H-elongata_contig69825.14630.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig69825.14630.1 vs. uniprot
Match: D8LI48_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LI48_ECTSI)

HSP 1 Score: 126 bits (317), Expect = 6.710e-29
Identity = 120/289 (41.52%), Postives = 145/289 (50.17%), Query Frame = 1 
Query:  103 GLNRPRYADWGPKLEKLARLLQ--PTRHG--HDHTGEASAGLGPNGGKSNXXXXXXXVVKEXXXXXXXXXPEDYDCSIEALGDAGNADGAACLLRVMRRQGFHASPRAYRSVIYACARVGHLAEAVALAREMESSRKRAPIIVDSNGFPSPRRRQSSYVANRAGEENVSFPRVCFGTQTDADTHVAAGVQTSQSAAADV--EGMD--------------------VVAHGANEALSPQQQLSPPSGLDSAAGKSGAQEEIGDGDESEQREFELDVVYNCIVCNFARSVT 891
            G+NR RY DW P+L  +ARLLQ  P  HG                     XXXXXXX    XXXXXXXX PE+ DCSIEALGDA +A GA  LLRVMRR+GFHASPRAYRSV+YACARVG L EA+ LA+EM+SS   A           P +R        +  ++          +T AD   A G   S  AAA     G++                    V + GA       ++ S  +  D   G  GA  E  DG      EF+L +VYNCI+CNFAR+ T
Sbjct:  572 GINRRRYTDWAPELANIARLLQNGPGSHGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPEELDCSIEALGDADDAGGATNLLRVMRREGFHASPRAYRSVVYACARVGLLDEAMTLAKEMQSSSSSAFAAQRQQADVEPPKRLREQEPPSSFNDDCEVENRSIAEETRADEPPALGDGASLGAAASFAERGLEEETEREARNGGVASELVPRRVPSTGAASGEDCVEEGSLVASNDRGNGNLGAVNEDEDG-----AEFDLAMVYNCIICNFARAAT 855
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig69825.14630.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LI48_ECTSI6.710e-2941.52Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig69825contigH-elongata_contig69825:414..1304 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score133.7
Seed ortholog evalue1.5e-28
Seed eggNOG ortholog2880.D8LI48
EggNOG free text desc.endonuclease activity
EggNOG OGsKOG4197@1,KOG4197@2759
Ec32 ortholog descriptionPentatricopeptide repeat
Ec32 orthologEc-26_005210.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size891
Cds size891
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931095.7643266-CDS-H-elongata_contig69825:413..13041622931095.7643266-CDS-H-elongata_contig69825:413..1304Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69825 414..1304 +
1691679696.1071503-CDS-H-elongata_contig69825:413..13041691679696.1071503-CDS-H-elongata_contig69825:413..1304Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69825 414..1304 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig69825.14630.1prot_H-elongata_contig69825.14630.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig69825 414..1304 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig69825.14630.1

>prot_H-elongata_contig69825.14630.1 ID=prot_H-elongata_contig69825.14630.1|Name=mRNA_H-elongata_contig69825.14630.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=297bp
CSQAGHWERALSLLADMRRQGITPSRVTYNAAVAGLNRPRYADWGPKLEK
LARLLQPTRHGHDHTGEASAGLGPNGGKSNQDQDQGAVVKEGGGEGSGPS
PEDYDCSIEALGDAGNADGAACLLRVMRRQGFHASPRAYRSVIYACARVG
HLAEAVALAREMESSRKRAPIIVDSNGFPSPRRRQSSYVANRAGEENVSF
PRVCFGTQTDADTHVAAGVQTSQSAAADVEGMDVVAHGANEALSPQQQLS
PPSGLDSAAGKSGAQEEIGDGDESEQREFELDVVYNCIVCNFARSVT
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mRNA from alignment at H-elongata_contig69825:414..1304+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig69825.14630.1 ID=mRNA_H-elongata_contig69825.14630.1|Name=mRNA_H-elongata_contig69825.14630.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=891bp|location=Sequence derived from alignment at H-elongata_contig69825:414..1304+ (Himanthalia elongata Himel1 dioecious)
TGTTCGCAAGCAGGACATTGGGAGCGCGCGCTGTCGCTCCTCGCCGACAT
GAGAAGACAGGGTATAACGCCGAGCAGGGTGACGTATAACGCGGCCGTTG
CGGGGCTGAATCGCCCTCGCTACGCTGACTGGGGTCCGAAGCTGGAAAAG
CTCGCGCGACTGCTTCAGCCCACGAGGCATGGGCACGACCACACGGGAGA
GGCTTCTGCTGGCCTTGGGCCGAACGGAGGAAAAAGTAACCAAGATCAAG
ATCAAGGCGCGGTTGTGAAGGAGGGAGGGGGGGAAGGGAGCGGACCATCC
CCTGAAGACTACGACTGTTCGATCGAAGCCCTCGGAGACGCTGGCAACGC
GGATGGCGCCGCCTGCCTTCTGAGGGTCATGCGCCGGCAGGGTTTCCACG
CTTCTCCAAGGGCGTATCGATCGGTAATCTACGCGTGCGCCAGGGTGGGA
CATCTCGCGGAAGCCGTTGCGCTGGCGAGGGAGATGGAAAGCTCTCGCAA
AAGGGCGCCGATCATCGTCGATTCGAACGGTTTTCCATCGCCGAGGCGTC
GCCAGTCGTCTTACGTCGCCAACCGCGCCGGCGAGGAAAACGTCTCGTTC
CCCCGTGTCTGCTTTGGGACACAGACTGACGCGGACACGCACGTCGCCGC
GGGCGTCCAGACATCACAGTCGGCGGCGGCGGATGTCGAGGGAATGGATG
TGGTGGCGCACGGAGCAAATGAAGCGCTGTCGCCACAGCAGCAACTGTCA
CCACCATCGGGACTAGATTCAGCCGCAGGGAAAAGTGGGGCCCAAGAGGA
GATAGGGGACGGCGACGAATCCGAACAAAGAGAGTTCGAACTGGATGTGG
TGTATAATTGCATCGTATGCAACTTTGCCCGGTCGGTGACG
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Coding sequence (CDS) from alignment at H-elongata_contig69825:414..1304+

>mRNA_H-elongata_contig69825.14630.1 ID=mRNA_H-elongata_contig69825.14630.1|Name=mRNA_H-elongata_contig69825.14630.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1782bp|location=Sequence derived from alignment at H-elongata_contig69825:414..1304+ (Himanthalia elongata Himel1 dioecious)
TGTTCGCAAGCAGGACATTGGGAGCGCGCGCTGTCGCTCCTCGCCGACAT
GAGAAGACAGGGTATAACGCCGAGCAGGGTGACGTATAACGCGGCCGTTG
CGGGGCTGAATCGCCCTCGCTACGCTGACTGGGGTCCGAAGCTGGAAAAG
CTCGCGCGACTGCTTCAGCCCACGAGGCATGGGCACGACCACACGGGAGA
GGCTTCTGCTGGCCTTGGGCCGAACGGAGGAAAAAGTAACCAAGATCAAG
ATCAAGGCGCGGTTGTGAAGGAGGGAGGGGGGGAAGGGAGCGGACCATCC
CCTGAAGACTACGACTGTTCGATCGAAGCCCTCGGAGACGCTGGCAACGC
GGATGGCGCCGCCTGCCTTCTGAGGGTCATGCGCCGGCAGGGTTTCCACG
CTTCTCCAAGGGCGTATCGATCGGTAATCTACGCGTGCGCCAGGGTGGGA
CATCTCGCGGAAGCCGTTGCGCTGGCGAGGGAGATGGAAAGCTCTCGCAA
AAGGGCGCCGATCATCGTCGATTCGAACGGTTTTCCATCGCCGAGGCGTC
GCCAGTCGTCTTACGTCGCCAACCGCGCCGGCGAGGAAAACGTCTCGTTC
CCCCGTGTCTGCTTTGGGACACAGACTGACGCGGACACGCACGTCGCCGC
GGGCGTCCAGACATCACAGTCGGCGGCGGCGGATGTCGAGGGAATGGATG
TGGTGGCGCACGGAGCAAATGAAGCGCTGTCGCCACAGCAGCAACTGTCA
CCACCATCGGGACTAGATTCAGCCGCAGGGAAAAGTGGGGCCCAAGAGGA
GATAGGGGACGGCGACGAATCCGAACAAAGAGAGTTCGAACTGGATGTGG
TGTATAATTGCATCGTATGCAACTTTGCCCGGTCGGTGACGTGTTCGCAA
GCAGGACATTGGGAGCGCGCGCTGTCGCTCCTCGCCGACATGAGAAGACA
GGGTATAACGCCGAGCAGGGTGACGTATAACGCGGCCGTTGCGGGGCTGA
ATCGCCCTCGCTACGCTGACTGGGGTCCGAAGCTGGAAAAGCTCGCGCGA
CTGCTTCAGCCCACGAGGCATGGGCACGACCACACGGGAGAGGCTTCTGC
TGGCCTTGGGCCGAACGGAGGAAAAAGTAACCAAGATCAAGATCAAGGCG
CGGTTGTGAAGGAGGGAGGGGGGGAAGGGAGCGGACCATCCCCTGAAGAC
TACGACTGTTCGATCGAAGCCCTCGGAGACGCTGGCAACGCGGATGGCGC
CGCCTGCCTTCTGAGGGTCATGCGCCGGCAGGGTTTCCACGCTTCTCCAA
GGGCGTATCGATCGGTAATCTACGCGTGCGCCAGGGTGGGACATCTCGCG
GAAGCCGTTGCGCTGGCGAGGGAGATGGAAAGCTCTCGCAAAAGGGCGCC
GATCATCGTCGATTCGAACGGTTTTCCATCGCCGAGGCGTCGCCAGTCGT
CTTACGTCGCCAACCGCGCCGGCGAGGAAAACGTCTCGTTCCCCCGTGTC
TGCTTTGGGACACAGACTGACGCGGACACGCACGTCGCCGCGGGCGTCCA
GACATCACAGTCGGCGGCGGCGGATGTCGAGGGAATGGATGTGGTGGCGC
ACGGAGCAAATGAAGCGCTGTCGCCACAGCAGCAACTGTCACCACCATCG
GGACTAGATTCAGCCGCAGGGAAAAGTGGGGCCCAAGAGGAGATAGGGGA
CGGCGACGAATCCGAACAAAGAGAGTTCGAACTGGATGTGGTGTATAATT
GCATCGTATGCAACTTTGCCCGGTCGGTGACG
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