mRNA_H-elongata_contig69824.14629.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig69824.14629.1
Unique NamemRNA_H-elongata_contig69824.14629.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig69824.14629.1 vs. uniprot
Match: D8LTJ3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTJ3_ECTSI)

HSP 1 Score: 165 bits (418), Expect = 3.270e-47
Identity = 99/193 (51.30%), Postives = 115/193 (59.59%), Query Frame = 1 
Query:    1 LDGQSGDLLWGAQFGSGQDDQAVGLVLGPNSAPPPSHHSHLSDRWDGNPPLYLTGWTRGALYSSVPARWQDGWVVKLSNPPPETLRVAGASYGDHGGGGGTEVVPTPGTTGAGTSAASDAARGAVTLGFVSTLTGMATLVLGALCIFLRRATNSGGALAPSRQEQLKGSLFRRRNRANTQDAGAMKGAGGNGK 579
            LDG+SG L+WG QFGSG DDQAVGLVLGP S+        L     G  PLYLTGWTRGAL+S  PARWQDGW VKL NPPP TL VA A   +       E +P P  +GA  +  + A RGAVT G V T+TGM  +V   L   LR+A  +GGAL+  +       +FRRR R    D G  KG GG GK
Sbjct:   57 LDGESGGLVWGEQFGSGADDQAVGLVLGPVSSAAADAVGSLEQEQGGGSPLYLTGWTRGALFSKQPARWQDGWAVKLPNPPPSTLGVADAGAWE-------EPLPVPIGSGAAEAQQAAAERGAVTAGLVGTVTGMLVVVSICLYFVLRKANMAGGALSALKDPDPTKGMFRRRGRPMLHDGGG-KGVGGAGK 241
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BLAST of mRNA_H-elongata_contig69824.14629.1 vs. uniprot
Match: A0A6H5KWN4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWN4_9PHAE)

HSP 1 Score: 161 bits (407), Expect = 4.510e-43
Identity = 99/198 (50.00%), Postives = 117/198 (59.09%), Query Frame = 1 
Query:    1 LDGQSGDLLWGAQFGSGQDDQAVGLVLGPNSAPPPSHHSHLSDRWDGNPPLYLTGWTRGALYSSVPARWQDGWVVKLSNPPPETLRVAGASYGDHGGGGGTEVVPTPGTTGAGTSAASDAARGAVTLGFVSTLTGMATLVLGALCIFLRRATNSGGALAPSRQEQLKG-----SLFRRRNRANTQDAGAMKGAGGNGK 579
            LDG+SG L+WG QFGSG DDQAVGLVLGP S         L     G  PLYLTGWTRGAL+S  PARWQDGW VKL NPPP TL VA     +       + +P P  +GA  +  + A RGAVT G V T+TGM  +V   L   LR+A  +GGAL+  R + +K       +FRRR R    D+G  KG GG GK
Sbjct:  362 LDGESGALVWGEQFGSGADDQAVGLVLGPVSFAAGDAVGSLEQEKGGGSPLYLTGWTRGALFSKEPARWQDGWAVKLPNPPPSTLGVADTGAWE-------KPLPVPIGSGAAEAQQAAAERGAVTAGLVGTVTGMLVVVSICLYFVLRKANMTGGALSAPRYDSVKDLDPTKGMFRRRGRPMLHDSGG-KGQGGGGK 551
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig69824.14629.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LTJ3_ECTSI3.270e-4751.30Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KWN4_9PHAE4.510e-4350.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig69824contigH-elongata_contig69824:249..2323 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionBeta-propeller repeat
Ec32 orthologEc-02_005830.1
Hectar predicted targeting categoryother localisation
Exons4
Model size579
Cds size579
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig69824.14629.1prot_H-elongata_contig69824.14629.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig69824 249..2323 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931095.6714609-CDS-H-elongata_contig69824:248..3731622931095.6714609-CDS-H-elongata_contig69824:248..373Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69824 249..373 +
1691679696.0707753-CDS-H-elongata_contig69824:248..3731691679696.0707753-CDS-H-elongata_contig69824:248..373Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69824 249..373 +
1622931095.687733-CDS-H-elongata_contig69824:436..5101622931095.687733-CDS-H-elongata_contig69824:436..510Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69824 437..510 +
1691679696.0799623-CDS-H-elongata_contig69824:436..5101691679696.0799623-CDS-H-elongata_contig69824:436..510Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69824 437..510 +
1622931095.702366-CDS-H-elongata_contig69824:1256..15261622931095.702366-CDS-H-elongata_contig69824:1256..1526Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69824 1257..1526 +
1691679696.0885358-CDS-H-elongata_contig69824:1256..15261691679696.0885358-CDS-H-elongata_contig69824:1256..1526Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69824 1257..1526 +
1622931095.7234719-CDS-H-elongata_contig69824:2213..23231622931095.7234719-CDS-H-elongata_contig69824:2213..2323Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69824 2214..2323 +
1691679696.097214-CDS-H-elongata_contig69824:2213..23231691679696.097214-CDS-H-elongata_contig69824:2213..2323Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69824 2214..2323 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig69824.14629.1

>prot_H-elongata_contig69824.14629.1 ID=prot_H-elongata_contig69824.14629.1|Name=mRNA_H-elongata_contig69824.14629.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=193bp
LDGQSGDLLWGAQFGSGQDDQAVGLVLGPNSAPPPSHHSHLSDRWDGNPP
LYLTGWTRGALYSSVPARWQDGWVVKLSNPPPETLRVAGASYGDHGGGGG
TEVVPTPGTTGAGTSAASDAARGAVTLGFVSTLTGMATLVLGALCIFLRR
ATNSGGALAPSRQEQLKGSLFRRRNRANTQDAGAMKGAGGNGK
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mRNA from alignment at H-elongata_contig69824:249..2323+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig69824.14629.1 ID=mRNA_H-elongata_contig69824.14629.1|Name=mRNA_H-elongata_contig69824.14629.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2075bp|location=Sequence derived from alignment at H-elongata_contig69824:249..2323+ (Himanthalia elongata Himel1 dioecious)
CTGGACGGTCAATCCGGCGATCTGCTCTGGGGAGCCCAGTTCGGTTCTGG
ACAGGACGATCAGGCGGTTGGGCTCGTGCTCGGACCGAATTCCGCCCCCC
CTCCGTCCCACCACTCCCATCTATCGTCCTCATCCTCTGGGGACGGAGGC
GGCTCACGGGCGGCAATACCAATATCAATACCTAACAGGGATAGATGGGA
CGGCAATCCCCCGCTGTACCTGACTGGATGGACCAGAGGGGCTCTTTATT
CTAGCGTTCCAGGTAGGGGAATAGGCGGATAGGCGGATGATCTCCAAAAT
AAGCAGCTTGTTGTGGCTGTTGTTTTCTTTGATGTTGTGTGTGCACCTGT
GTTTTTGTAGTCCATGCATGTGTACATCGTGGTGCGTGATACTATAGCGG
AAGGCGATAGGCGATGGCCGTGTCAGAGAAGCTTGATGGTGTGAGGACGC
CGCGTGTCGACTTCGATGTAGAACCTTTCTTTGTTTTCTCTCCTTTTTAT
GTTTTCTCTCCTTTTTATCTCTCTTTTTTAGGTTTCTTTCTTGTTTGTCT
TCAAACTTTTTTTACTTTTTTTTTCCCCCCCTTTTGACGTTTTTTGTCTA
AATTTTGTCTCTTTTATTTAGTTTTATTTACAAGTTATATAAAACGCTTT
TCATCCTTACTATCTTTATTACCATCACTACCGTTTTATCTTCACCACGG
TACCAGTATTTTACTTTTGTTACGGTTATTACCCATATTTTCCTTTTATT
ATCATTATTATCTTATTGTACTGTATTCATTACTCATATAACTTTACTGC
CATGATTATCTTTATTATCATCATAGTCTAAACTAATACAGGTATTACGA
ATATTTTGCTACGAGAAAAGAATATAGGGAAGGAAACGAGGCATGAGCAT
GGGCATCGGAGCGCTTTGCCACACACGCAACATGTTCGTCTAAATATTGC
GAGATAAGTGACGTCAAAACGCCGGCTCTCTGTCGCGATCACGAACTGAC
GCCCGCAGCGCGCTGGCAGGACGGGTGGGTTGTAAAGCTCTCCAACCCCC
CACCCGAAACCCTGAGGGTAGCCGGGGCTTCATACGGCGATCATGGTGGC
GGCGGAGGGACTGAAGTGGTGCCGACCCCGGGCACGACAGGGGCAGGGAC
TTCGGCTGCTTCGGACGCCGCGCGGGGAGCGGTGACCCTGGGCTTCGTAA
GTACACTGACGGGGATGGCGACGCTCGTGCTGGGAGCGCTTTGTATCTTC
CTTCGACGCGCCACAAACAGCGGGGGAGGTGAGATATAGTAGACGTTTGT
CTCTGTGTGTGTGGGTCTTTTGTGTGTAATTATTAAATTGCACATAACCG
CGCAATCCGGTCCTGTTGTGTGTGTGTGTGTGTGTGTTTATGAAATTTCA
CATAATCACACAATCCGGCCCTGTCGTGTGTGTGTGTGTGTGTGTGTGTA
TTTATTAAATTGCACATAACCGCTAAGGCAATCCGGTCCTGCAATCTACT
CATTCTATGCTACTAATACTGCATGTAACCAGCCTAGGGGTTACTTTCCG
TGAATACATTTTTGGCTGGACATACGCGTGCATCCAGCCACATCGCCTTT
GCAGTGTTCGTGTGTGTGTTTGTATAATCGGAGTCGGAGAGTGGGATCTG
CGATCGATTGTGGATCCAACACGGCAATCAGAGGAAGAAAGGGGACGTAG
AGGGAGGCATACCAGCAAACACGGCATGACCATCTGCGCCGTGCGGAGTC
CAGAGTTTGAAGTGTTTTATGTCGGTATTGCTTTTTCTCCTTGTCCTGCT
TCCAACGTCGACGTAGGAGGGAATCAACCCTCCCCCTTACCCCCTGTCTC
TTCGAGGGTATAACCCTACTGCAAAGACAATTCCATGCATCTCATATCCT
TTTTTGCTTTCCTTTTTCGGCACACAACCGCCCCACGTCGCACCGCCTTG
CTTTCGTTACCAAAGCCCTCGCGCCGTCGAGACAAGAGCAGCTAAAGGGG
TCATTATTCAGGCGGCGCAATCGTGCGAACACGCAAGACGCAGGCGCTAT
GAAGGGGGCGGGAGGCAATGGAAAA
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Coding sequence (CDS) from alignment at H-elongata_contig69824:249..2323+

>mRNA_H-elongata_contig69824.14629.1 ID=mRNA_H-elongata_contig69824.14629.1|Name=mRNA_H-elongata_contig69824.14629.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1158bp|location=Sequence derived from alignment at H-elongata_contig69824:249..2323+ (Himanthalia elongata Himel1 dioecious)
CTGGACGGTCAATCCGGCGATCTGCTCTGGGGAGCCCAGTTCGGTTCTGG
ACAGGACGATCAGGCGGTTGGGCTCGTGCTCGGACCGAATTCCGCCCCCC
CTCCGTCCCACCACTCCCATCTATCCTGGACGGTCAATCCGGCGATCTGC
TCTGGGGAGCCCAGTTCGGTTCTGGACAGGACGATCAGGCGGTTGGGCTC
GTGCTCGGACCGAATTCCGCCCCCCCTCCGTCCCACCACTCCCATCTATC
GGATAGATGGGACGGCAATCCCCCGCTGTACCTGACTGGATGGACCAGAG
GGGCTCTTTATTCTAGCGTTCCAGGGATAGATGGGACGGCAATCCCCCGC
TGTACCTGACTGGATGGACCAGAGGGGCTCTTTATTCTAGCGTTCCAGCG
CGCTGGCAGGACGGGTGGGTTGTAAAGCTCTCCAACCCCCCACCCGAAAC
CCTGAGGGTAGCCGGGGCTTCATACGGCGATCATGGTGGCGGCGGAGGGA
CTGAAGTGGTGCCGACCCCGGGCACGACAGGGGCAGGGACTTCGGCTGCT
TCGGACGCCGCGCGGGGAGCGGTGACCCTGGGCTTCGTAAGTACACTGAC
GGGGATGGCGACGCTCGTGCTGGGAGCGCTTTGTATCTTCCTTCGACGCG
CCACAAACAGCGGGGGAGCGCGCTGGCAGGACGGGTGGGTTGTAAAGCTC
TCCAACCCCCCACCCGAAACCCTGAGGGTAGCCGGGGCTTCATACGGCGA
TCATGGTGGCGGCGGAGGGACTGAAGTGGTGCCGACCCCGGGCACGACAG
GGGCAGGGACTTCGGCTGCTTCGGACGCCGCGCGGGGAGCGGTGACCCTG
GGCTTCGTAAGTACACTGACGGGGATGGCGACGCTCGTGCTGGGAGCGCT
TTGTATCTTCCTTCGACGCGCCACAAACAGCGGGGGAGCCCTCGCGCCGT
CGAGACAAGAGCAGCTAAAGGGGTCATTATTCAGGCGGCGCAATCGTGCG
AACACGCAAGACGCAGGCGCTATGAAGGGGGCGGGAGGCAATGGAAAACC
CTCGCGCCGTCGAGACAAGAGCAGCTAAAGGGGTCATTATTCAGGCGGCG
CAATCGTGCGAACACGCAAGACGCAGGCGCTATGAAGGGGGCGGGAGGCA
ATGGAAAA
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