prot_H-elongata_contig11888.1462.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig11888.1462.1
Unique Nameprot_H-elongata_contig11888.1462.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length190
Homology
BLAST of mRNA_H-elongata_contig11888.1462.1 vs. uniprot
Match: A0A6H5JBE3_9PHAE (PSII_Pbs31 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JBE3_9PHAE)

HSP 1 Score: 255 bits (651), Expect = 5.980e-84
Identity = 142/191 (74.35%), Postives = 164/191 (85.86%), Query Frame = 0
Query:    1 MKTVCVALALSSPCAAFMNPMINVRPTTSSSMTMT-SSEPISRAQALNNVFASGAAVIAAAAVPGVAFADGASSLATKSRARGIYGSRIEALKGAVDKGDTATVLSEQNCFMLFNSGVYKSDKAKFAEAEKLARAVVSAASAGDASALKSSYASYMKYIDNKSGFNGAGDGQGFGSEFDYKNRTPLGTVYQ 190
            MKT CVALAL    +AF+ PM NVR T+SSS ++  SSEP++R+QAL+N+F + AAV AAAAVPGVAFADGA S AT++RARGIYG+RI ALKGAVDKGDTA +L+EQNCF LFNSGVY +DKAKFAEAE LA++VV AA AGDA ALK SYA+YMKY + KSG+NGAGDGQGFGSEFDYKNRTPLGTVYQ
Sbjct:    1 MKTACVALALLGSSSAFVVPMANVRTTSSSSTSLAMSSEPMTRSQALSNLFGATAAVAAAAAVPGVAFADGAKSPATQARARGIYGNRIAALKGAVDKGDTAAILAEQNCFRLFNSGVYSTDKAKFAEAEALAKSVVQAAGAGDAKALKDSYAAYMKYTEKKSGYNGAGDGQGFGSEFDYKNRTPLGTVYQ 191          
BLAST of mRNA_H-elongata_contig11888.1462.1 vs. uniprot
Match: A0A7S2S7V4_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S7V4_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 1.210e-19
Identity = 59/131 (45.04%), Postives = 85/131 (64.89%), Query Frame = 0
Query:   66 AFADGASSLATKSRARGIYGSRIEALKGAVDKGDTATVLSEQNCFMLFNSGVYKSDKAKFAEAEKLARAVVS----AASAGDASALKSSYASYMKYIDNKSGFNGAGDG--QGFGSEFDYKNRTPL-GTVY 189
            AFADGA SLAT +RARG+YG RI AL  +V+KGD   V +E+N F+LFNSGVY  +     + +K+A A  +    A S GD + +KS+YA +MK  D + G++G      QG+ +E+D+K + P  G++Y
Sbjct:   72 AFADGAVSLATVARARGLYGGRIAALSDSVNKGDLEAVEAEKNAFILFNSGVYARNGPVDRKNKKVAVAATNSLFDAVSKGDKAGVKSAYAEFMKVADIQPGYSGKDKDFTQGYSTEYDWKYKDPKKGSIY 202          
BLAST of mRNA_H-elongata_contig11888.1462.1 vs. uniprot
Match: A0A7S2C001_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C001_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 6.340e-19
Identity = 78/203 (38.42%), Postives = 115/203 (56.65%), Query Frame = 0
Query:    1 MKTVCVALALSSPCAAFMNPMINVRPTTSSSMTMTSSEPISR-------AQALNNVFASGAAVIAAAAVPGVAFADGASSLATKSRARGIYGSRIEALKGAVDKGDTATVLSEQNCFMLFNSGVYKSDKAKFAEAEKL----ARAVVSAASAGDASALKSSYASYMKYIDNKS-GFNG--AGDGQGFGSEFDYKNRTPLGTVY 189
            M++  VALAL +  +AF   ++  R T S S     +E + R       A  L  VFA   A          A ADGA SLAT +R+RGIYG+R+  L GAV+KGD   VL+E+N F+LFN+    +++ K  E +K+      AV++AA+ GD +ALK++YA Y+K     +  + G  A   QG+ +++D+K RT  GT+Y
Sbjct:   16 MRSFIVALALLASASAFSPTILRARSTVSMS-----AENVDRRGMITKTAGVLGGVFAGAQA----------ANADGAVSLATMARSRGIYGTRVADLAGAVEKGDFEAVLAEKNAFVLFNNS---NNRPKNKEEKKINAVKQEAVLAAAAKGDKAALKAAYADYIKTASLPNPAYKGRDADYSQGYSNDYDWKARTNRGTIY 200          
BLAST of mRNA_H-elongata_contig11888.1462.1 vs. uniprot
Match: A0A7S2FV99_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FV99_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 5.600e-17
Identity = 73/189 (38.62%), Postives = 108/189 (57.14%), Query Frame = 0
Query:    6 VALALSSPCAAFMNPMINVRPTTSSSMTMTSSEPISRAQALNNVFASGAAVIAAAAVPGVAFADGASSLATKSRARGIYGSRIEALKGAVDKGDTATVLSEQNCFMLFNSGVYKSDKAKFAEAEKLA--RAVVSAASAGDASALKSSYASYMKYIDNKSGFNGAGDG--QGFGSEFDYKNRTPLGTVYQ 190
            +AL L++  +AF  P+ N     + S  + S+E  SR   +  V A GA V A++A    A ADGA S++T+ R++GIYG+RI AL  AV  GD A V  ++N F+LF SG + +   K    E  A    + +A S  D +ALKSSYA ++K  D +  ++       QG+ +E+D+K  TP GT+YQ
Sbjct:   26 IALCLAASASAF-TPVFN----RAQSTVVMSAEQSSRRGFVQTVGAFGAMVGASSA----ALADGAQSMSTRQRSKGIYGARIVALDQAVAAGDFAAVEEQKNAFVLFVSGGFTTPSGKVIAKELKADYANIFAAVSNKDQAALKSSYAEFVKKADIRPLYDEKTKAYTQGYSTEYDWKAYTPKGTIYQ 205          
BLAST of mRNA_H-elongata_contig11888.1462.1 vs. uniprot
Match: A0A7S3PVM6_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PVM6_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 2.240e-16
Identity = 72/192 (37.50%), Postives = 107/192 (55.73%), Query Frame = 0
Query:    1 MKTVCVALALSSPCAAFMNPMINVRPTTSSSMTMTSSEPISRAQALNNVFASGAAVIAAAAVPGVAFADGASSLATKSRARGIYGSRIEALKGAVDKGDTATVLSEQNCFMLFNSGVYKSDKAKFAEAEKLARAVVSAASAGDASALKSSYASYMKYIDNKSGFN---GAGDGQGFGSEFDYKNRTPLGTVY 189
            MK +  ALAL+S  AAF  P    R TT+ SM         R  A   +  +GA +   A VP +A AD A+ +   +RARG+YGSRI  L GAV  GD + + +E++ F+LFNSG Y ++K     A     A+ +A  +GD +A+KS+Y +Y+    NK        + +GQG+ S+FD++ R+  G +Y
Sbjct:    1 MKFIVAALALTSV-AAFA-PSSLERSTTALSM--------DRRSAFGQIATAGAVL---AGVPAIASADVAAQI---NRARGLYGSRIANLAGAVAAGDYSAIAAEKSAFILFNSGAYPNNKPAQKNAVSQTNAIFAAIRSGDKAAVKSAYETYV--TTNKINILPTVDSNEGQGYCSDFDFRVRSSAGAIY 174          
BLAST of mRNA_H-elongata_contig11888.1462.1 vs. uniprot
Match: A0A448ZDN4_9STRA (PSII_Pbs31 domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZDN4_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 1.980e-15
Identity = 52/125 (41.60%), Postives = 76/125 (60.80%), Query Frame = 0
Query:   68 ADGASSLATKSRARGIYGSRIEALKGAVDKGDTATVLSEQNCFMLFNSGVYKSDKAKFAEAEKL--ARAVVSAASAGDASALKSSYASYMKYID-NKSGFNGAGDGQGFGSEFDYKNRTPLGTVY 189
            ADGA S AT  RA+  YGSRI ALK AV KGD   V +E+N F+L+NSG +   K K  +A  +    A+ +A  + DA ALK++YA+Y K ++ +      A  GQG+ S++DY+ +T    ++
Sbjct:   57 ADGAVSAATIQRAKFQYGSRIAALKDAVSKGDFGAVAAEKNAFILYNSGAFPGTKNKDKKAAAIQGTNAIFAAIRSKDAGALKTAYAAYTKTVELSDYAAISADQGQGYSSDYDYRVKTSQAAIW 181          
BLAST of mRNA_H-elongata_contig11888.1462.1 vs. uniprot
Match: A0A7S4A9M9_9STRA (Hypothetical protein n=2 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4A9M9_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 5.460e-15
Identity = 56/129 (43.41%), Postives = 75/129 (58.14%), Query Frame = 0
Query:   65 VAFADGASSLATKSRARGIYGSRIEALKGAVDKGDTATVLSEQNCFMLFNSGVY--KSDKAKFAEAEKLARAVVSAASAGDASALKSSYASYMKYIDNKSGFNG--AGDGQGFGSEFDYKNRTPLGTVY 189
            +A ADGA S AT  R +  YGSRI ALK AV  GD   V +E+N F+L+NSG Y    +KA+ AEA K    +  +    DA ALKS+YA Y K + N S +    A  GQG+ S++DY+  T    ++
Sbjct:   54 LALADGAVSTATMQRQKFRYGSRIAALKDAVASGDFVAVAAEKNAFILYNSGAYPGSKNKAQKAEAIKATNNLFKSIRDKDAGALKSAYADYAKVV-NLSDYAAISAEQGQGYSSDYDYRVGTKQAAIW 181          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11888.1462.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5JBE3_9PHAE5.980e-8474.35PSII_Pbs31 domain-containing protein n=2 Tax=Ectoc... [more]
A0A7S2S7V4_9STRA1.210e-1945.04Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2C001_9STRA6.340e-1938.42Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2FV99_9STRA5.600e-1738.62Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S3PVM6_9STRA2.240e-1637.50Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A448ZDN4_9STRA1.980e-1541.60PSII_Pbs31 domain-containing protein n=1 Tax=Pseud... [more]
A0A7S4A9M9_9STRA5.460e-1543.41Hypothetical protein n=2 Tax=Pseudo-nitzschia aust... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.20.120.1740coord: 69..190
e-value: 2.9E-42
score: 145.9
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 3..11
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..2
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 17..190
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 12..16
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..16
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..16
score: 0.514
IPR040933Photosystem II Psb31 proteinPFAMPF18240PSII_Pbs31coord: 71..159
e-value: 1.2E-32
score: 112.2

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig11888contigH-elongata_contig11888:5652..8479 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig11888.1462.1mRNA_H-elongata_contig11888.1462.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig11888 5652..8479 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig11888.1462.1 ID=prot_H-elongata_contig11888.1462.1|Name=mRNA_H-elongata_contig11888.1462.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=190bp
MKTVCVALALSSPCAAFMNPMINVRPTTSSSMTMTSSEPISRAQALNNVF
ASGAAVIAAAAVPGVAFADGASSLATKSRARGIYGSRIEALKGAVDKGDT
ATVLSEQNCFMLFNSGVYKSDKAKFAEAEKLARAVVSAASAGDASALKSS
YASYMKYIDNKSGFNGAGDGQGFGSEFDYKNRTPLGTVYQ
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR040933PSII_Pbs31