mRNA_H-elongata_contig69738.14622.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig69738.14622.1
Unique NamemRNA_H-elongata_contig69738.14622.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig69738.14622.1 vs. uniprot
Match: A0A6H5KYQ8_9PHAE (3'-5' exonuclease domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KYQ8_9PHAE)

HSP 1 Score: 159 bits (402), Expect = 5.090e-37
Identity = 117/286 (40.91%), Postives = 142/286 (49.65%), Query Frame = 2 
Query:  344 RACMSPRQETLSAASSEPPHAALRFDRHLSFVEFHNGYALLMNCLGSVAREREQASGFLNEDGSYVAWFLQGRLAPERI-----AAE-----------------------AGGKA-------------------------RSNAVGRFFERLEVSSGASSSIWGALPNDCGNAHDAANLNAASRAYGEVVAAGTSRASSATNLD-------LVLFARSKGRPFVYCGAVECVAQEYAWNTGSSRLGAVRFILALRDWRRASARTAPGGEDDGDGEGAPSFGQVVRE 1021
            RAC+ PR E     S E P   LRFDRH SFVEF NGYALLMNC GS+  +RE ASGFLNE G+  AW+L+G+L+ +       AAE                       +GG+                            +A+G+F +RL  +SG  SS+ G LP D     D      A +  G   AAG        + +       LVLFAR KGRPFVYCGAV+CVAQEY W+ GSS LG VRF LALR+W  A+    P G    + EGAP    VV E
Sbjct: 1099 RACIFPRGEM--PTSGELP-TVLRFDRHQSFVEFGNGYALLMNCGGSI--DREHASGFLNESGTMAAWYLEGKLSSDAAFVDNEAAEYQRQQQDSLRQERQGTTAIVTPPSGGREVAEIFTGRGAPSSTGTGDAADGXXXXGDAIGKFLQRLADASGTPSSMLGGLPED-----DPPAFMEAPQRGGAGPAAGVGAGGEGADQEQQQHPPHLVLFARVKGRPFVYCGAVDCVAQEYVWSAGSS-LGRVRFTLALREWHEAATAVVPAGASRRE-EGAPRRSSVVGE 1372
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig69738.14622.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KYQ8_9PHAE5.090e-3740.913'-5' exonuclease domain-containing protein n=2 Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig69738contigH-elongata_contig69738:247..3157 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score152.9
Seed ortholog evalue1.8e-34
Seed eggNOG ortholog2880.D8LQE1
EggNOG free text desc.3'-5'-exoribonuclease activity involved in mature miRNA 3'-end processing
EggNOG OGsKOG2207@1,KOG2207@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size1913
Cds size705
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig69738.14622.1prot_H-elongata_contig69738.14622.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig69738 1103..2805 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931094.8171933-UTR-H-elongata_contig69738:246..11021622931094.8171933-UTR-H-elongata_contig69738:246..1102Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig69738 247..1102 -
1691679695.6851075-UTR-H-elongata_contig69738:246..11021691679695.6851075-UTR-H-elongata_contig69738:246..1102Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig69738 247..1102 -
1622931094.9023473-UTR-H-elongata_contig69738:2805..31571622931094.9023473-UTR-H-elongata_contig69738:2805..3157Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig69738 2806..3157 -
1691679695.7377079-UTR-H-elongata_contig69738:2805..31571691679695.7377079-UTR-H-elongata_contig69738:2805..3157Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig69738 2806..3157 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931094.832713-CDS-H-elongata_contig69738:1102..16491622931094.832713-CDS-H-elongata_contig69738:1102..1649Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69738 1103..1649 -
1691679695.7115233-CDS-H-elongata_contig69738:1102..16491691679695.7115233-CDS-H-elongata_contig69738:1102..1649Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69738 1103..1649 -
1622931094.8888724-CDS-H-elongata_contig69738:2647..28051622931094.8888724-CDS-H-elongata_contig69738:2647..2805Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69738 2648..2805 -
1691679695.7224562-CDS-H-elongata_contig69738:2647..28051691679695.7224562-CDS-H-elongata_contig69738:2647..2805Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69738 2648..2805 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig69738.14622.1

>prot_H-elongata_contig69738.14622.1 ID=prot_H-elongata_contig69738.14622.1|Name=mRNA_H-elongata_contig69738.14622.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=235bp
MSPRQETLSAASSEPPHAALRFDRHLSFVEFHNGYALLMNCLGSVARERE
QASGFLNEDGSYVAWFLQGRLAPERIAAEAGGKARSNAVGRFFERLEVSS
GASSSIWGALPNDCGNAHDAANLNAASRAYGEVVAAGTSRASSATNLDLV
LFARSKGRPFVYCGAVECVAQEYAWNTGSSRLGAVRFILALRDWRRASAR
TAPGGEDDGDGEGAPSFGQVVREGLKSESSPNRF*
back to top

mRNA from alignment at H-elongata_contig69738:247..3157-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig69738.14622.1 ID=mRNA_H-elongata_contig69738.14622.1|Name=mRNA_H-elongata_contig69738.14622.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2911bp|location=Sequence derived from alignment at H-elongata_contig69738:247..3157- (Himanthalia elongata Himel1 dioecious)
AACCCAACTGGGCAGTAGTGTGGAACTTATGATCGCGATGGTTGTGGGAG
GAGGAGGAGGAGGAGGCTAGACGCTTATACGGAGGCGTTATCATTGTTCA
TGATGGAGGAACAAAGGGAGAGAGAGTGAAAGGCACAGTACGTTCCTCCT
CGAAGCCCCGACCTGAAGAAAGCCCCCTCCCTGTGTGTCCTATATTTTCA
AAAGATTGAAGATATTTTTTCATCAGCGATCGTGAGGGGTTCGGCCCGAA
TCCACCACCCGCACACAACCTATTTGCCTCTTTTCACGCCTTCGATTCTC
TATCTTATCATCTCTTGTTTCCTCTCGTCTCGGCGAGCGGCACAGGGCGT
GCATGTCCCCCCGACAGGAGACGCTCTCCGCCGCCAGCAGTGAGCCGCCC
CACGCCGCCCTTCGCTTCGATCGGCACCTAAGTTTCGTGGAGTTCCATAA
CGGTTACGCGCTGCTGATGAACTGCCTGGGAAGCGTCGCGAGAGAGCGAG
AGCAAGCTAGGTGCGTCGCTTCGCTTCGCTCCCCGCGCGGTAAACATGTC
GCGATAGAGCCCCCCCCCCTCTCTCATTAGTCTAACAGCTACGGTATACA
AAGCTTAACTATATCTCCCTCGCCATCACCATATATTTCCCCTCCCCCCC
CCGCCTCTACGCCCTTCCTCTCGTCTCGTTCTAGTGGAAACCCCTACGGC
AGAGCTCCTGGCCGCCGATTTATTTCTGTGCGTTCCATTTAAATTGTTTT
GTGGTGTATATTCCAGGGCGAGAGAACTCTAGCCGCCGATTTCTCCCTAT
CCTCGTCATCTTCCGAATGGTTCGCAGTTCTTGGAAGCGACCCTGATACA
GGCGTATTTATCTTAGCAATACCCAGTATGGGATGGCATGGTATTGGGGG
GATCTTCGTACTCGTTGTGCTAAGATTTGTCGATGTATGTTGTTTGAAGT
TGACGAAATCCCGGCCCGTTTGAGTTTTGAGTCGTTTAACGATGAGCGGA
TGGGGGTGAGGAATTTTGGACGAGGGGGAACGGTATTAAAAAAAAATCCC
GGGGATGGGACAACGCATCCCCTTTTACCTCACACAGACTGATATGCCTC
AAATGCGCAATTCACTCCACTAGATAGAACGGAATGATGGATAAATTGTA
TCCTCAGAAGGGGCTGTGTTTTTACACTACCACCCCGTGAACTCGGGGGC
ATATTATTCAAATCCCCTCTCCCCCCCTACTCTTTACATTTGACCCACCT
CTTTCACAGCCGCTTACGGATCAAAAATCCTGAACCATGTCATGGCTCGA
ACATCCTTCCTCGCGTCTTTTTCTTTCGCCCTCGTTTTATTTCCAAACCC
AGAGGCTTAAAAAATAATCACATCACATCTCTTGATTTTGATGCAGTCGA
TGCACTGTTAGCCCCCAGGATAAAATCGGATCGCGCGCTCCCTCGGTCTC
GTTCGATGCCGCGCCCCTCCTCCCTACCTCCCTCTACGTCATGACGTCAT
GGCGTCAGTGGCTTTCTGAATGAGGATGGCTCTTATGTGGCGTGGTTCCT
TCAGGGTCGTCTCGCTCCCGAGCGAATCGCCGCCGAAGCCGGCGGAAAGG
CCAGAAGCAATGCCGTCGGCAGATTTTTCGAGCGACTCGAGGTCTCGTCG
GGCGCGTCTTCCTCGATATGGGGGGCCTTGCCCAACGATTGCGGCAATGC
TCACGACGCCGCCAACCTGAATGCGGCTTCCAGAGCATACGGGGAGGTAG
TGGCGGCGGGGACCTCAAGAGCCTCGTCTGCAACGAACCTTGATCTCGTC
CTGTTCGCCAGGTCCAAGGGTCGACCGTTCGTGTACTGCGGGGCCGTGGA
GTGCGTCGCGCAGGAGTACGCGTGGAACACCGGTTCTTCCCGCCTTGGCG
CTGTGCGGTTCATACTTGCCCTGAGAGACTGGCGACGAGCCTCCGCCAGA
ACCGCTCCTGGCGGAGAGGATGACGGTGATGGCGAAGGCGCGCCCTCTTT
CGGACAGGTCGTGCGCGAGGGACTCAAGTCCGAATCGAGTCCGAATCGTT
TTTAACATTTTTATCATGGTCGCTTCGCTACGGTGAGAGTAGGTAGGCGG
TAAGAGGGCGAGGGCTTGGAGGCGCATGAAGCAGGAGTATGGAGGTGGCG
AGCTTATTAAATGCGCCGATGCTGTGATCTCGCACGCGCTTGTGTGTGTG
GACCGTTTGTGCAAGAGCTAACCATATGTGGCAAGATATTGTTGAGGGAA
AATAGCTTATCGTATCCTGCGTGTAAATATTGTACAGCGGACCCCTGTCC
TGAGAGGTAAATTCCGTGAACGAAGGGGGCGGGCATCTACTGTAGGTGGC
CCTTTACATAAGTATCTCGGAGTAAGGAATTGCGCTATATAAGGTACCTA
AAATTATCCCCCACCAGTTGTCTCGATGGAAGGTACTTTGGATACCTTAC
GCAGTGATTTATCTGAAAAAGTTATTTTCAGTATATTATTCAAATACGCG
GCCTAATAGCTGATGCTTCGAGCCCTGTCTTGGAACCATCTGCTAAGCGC
ACATAGTAGCTATAATGCACAGTTGGCATTGTCACAGCACAGCCATGCCT
TGCGCGGCAGGATCAACTTGCAAGCTTCCGGAAAGACACCCCAAATACTC
CAGACTTCACGGGTCACACTTCCCGCAGGGAATTCGGAGGCTACCTGCAC
GGCTTGTGTAGTTACCAGGACCCTACCAGCGACAAATGAAATTTATCGCG
TTTGCCCCGCTTGTTCTTCCAAGGCGGGGGCTGGCACTACCACTGCCTCC
CGTCTTTGCATAGGTCTGATTCCGTAAGGTGTGACACATCGAGGTTGAAT
ACATGTCTTTCTTATATTGGGAGAGAAAAGACGAAGTGCCAAATCAGGCA
ACAGAAAAGGG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig69738:247..3157-

>mRNA_H-elongata_contig69738.14622.1 ID=mRNA_H-elongata_contig69738.14622.1|Name=mRNA_H-elongata_contig69738.14622.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1410bp|location=Sequence derived from alignment at H-elongata_contig69738:247..3157- (Himanthalia elongata Himel1 dioecious)
ATGTCCCCCCGACAGGAGACGCTCTCCGCCGCCAGCAGTGAGCCGCCCCA
CGCCGCCCTTCGCTTCGATCGGCACCTAAGTTTCGTGGAGTTCCATAACG
GTTACGCGCTGCTGATGAACTGCCTGGGAAGCGTCGCGAGAGAGCGAGAG
CAAGCTAGATGTCCCCCCGACAGGAGACGCTCTCCGCCGCCAGCAGTGAG
CCGCCCCACGCCGCCCTTCGCTTCGATCGGCACCTAAGTTTCGTGGAGTT
CCATAACGGTTACGCGCTGCTGATGAACTGCCTGGGAAGCGTCGCGAGAG
AGCGAGAGCAAGCTAGTGGCTTTCTGAATGAGGATGGCTCTTATGTGGCG
TGGTTCCTTCAGGGTCGTCTCGCTCCCGAGCGAATCGCCGCCGAAGCCGG
CGGAAAGGCCAGAAGCAATGCCGTCGGCAGATTTTTCGAGCGACTCGAGG
TCTCGTCGGGCGCGTCTTCCTCGATATGGGGGGCCTTGCCCAACGATTGC
GGCAATGCTCACGACGCCGCCAACCTGAATGCGGCTTCCAGAGCATACGG
GGAGGTAGTGGCGGCGGGGACCTCAAGAGCCTCGTCTGCAACGAACCTTG
ATCTCGTCCTGTTCGCCAGGTCCAAGGGTCGACCGTTCGTGTACTGCGGG
GCCGTGGAGTGCGTCGCGCAGGAGTACGCGTGGAACACCGGTTCTTCCCG
CCTTGGCGCTGTGCGGTTCATACTTGCCCTGAGAGACTGGCGACGAGCCT
CCGCCAGAACCGCTCCTGGCGGAGAGGATGACGGTGATGGCGAAGGCGCG
CCCTCTTTCGGACAGGTCGTGCGCGAGGGACTCAAGTCCGAATCGAGTCC
GAATCGTTTTTAATGGCTTTCTGAATGAGGATGGCTCTTATGTGGCGTGG
TTCCTTCAGGGTCGTCTCGCTCCCGAGCGAATCGCCGCCGAAGCCGGCGG
AAAGGCCAGAAGCAATGCCGTCGGCAGATTTTTCGAGCGACTCGAGGTCT
CGTCGGGCGCGTCTTCCTCGATATGGGGGGCCTTGCCCAACGATTGCGGC
AATGCTCACGACGCCGCCAACCTGAATGCGGCTTCCAGAGCATACGGGGA
GGTAGTGGCGGCGGGGACCTCAAGAGCCTCGTCTGCAACGAACCTTGATC
TCGTCCTGTTCGCCAGGTCCAAGGGTCGACCGTTCGTGTACTGCGGGGCC
GTGGAGTGCGTCGCGCAGGAGTACGCGTGGAACACCGGTTCTTCCCGCCT
TGGCGCTGTGCGGTTCATACTTGCCCTGAGAGACTGGCGACGAGCCTCCG
CCAGAACCGCTCCTGGCGGAGAGGATGACGGTGATGGCGAAGGCGCGCCC
TCTTTCGGACAGGTCGTGCGCGAGGGACTCAAGTCCGAATCGAGTCCGAA
TCGTTTTTAA
back to top