mRNA_H-elongata_contig11888.1462.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig11888.1462.1
Unique NamemRNA_H-elongata_contig11888.1462.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig11888.1462.1 vs. uniprot
Match: A0A6H5JBE3_9PHAE (PSII_Pbs31 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JBE3_9PHAE)

HSP 1 Score: 255 bits (651), Expect = 5.980e-84
Identity = 142/191 (74.35%), Postives = 164/191 (85.86%), Query Frame = 1 
Query:    1 MKTVCVALALSSPCAAFMNPMINVRPTTSSSMTMT-SSEPISRAQALNNVFASGAAVIAAAAVPGVAFADGASSLATKSRARGIYGSRIEALKGAVDKGDTATVLSEQNCFMLFNSGVYKSDKAKFAEAEKLARAVVSAASAGDASALKSSYASYMKYIDNKSGFNGAGDGQGFGSEFDYKNRTPLGTVYQ 570
            MKT CVALAL    +AF+ PM NVR T+SSS ++  SSEP++R+QAL+N+F + AAV AAAAVPGVAFADGA S AT++RARGIYG+RI ALKGAVDKGDTA +L+EQNCF LFNSGVY +DKAKFAEAE LA++VV AA AGDA ALK SYA+YMKY + KSG+NGAGDGQGFGSEFDYKNRTPLGTVYQ
Sbjct:    1 MKTACVALALLGSSSAFVVPMANVRTTSSSSTSLAMSSEPMTRSQALSNLFGATAAVAAAAAVPGVAFADGAKSPATQARARGIYGNRIAALKGAVDKGDTAAILAEQNCFRLFNSGVYSTDKAKFAEAEALAKSVVQAAGAGDAKALKDSYAAYMKYTEKKSGYNGAGDGQGFGSEFDYKNRTPLGTVYQ 191
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BLAST of mRNA_H-elongata_contig11888.1462.1 vs. uniprot
Match: A0A7S2S7V4_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S7V4_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 1.210e-19
Identity = 59/131 (45.04%), Postives = 85/131 (64.89%), Query Frame = 1 
Query:  196 AFADGASSLATKSRARGIYGSRIEALKGAVDKGDTATVLSEQNCFMLFNSGVYKSDKAKFAEAEKLARAVVS----AASAGDASALKSSYASYMKYIDNKSGFNGAGDG--QGFGSEFDYKNRTPL-GTVY 567
            AFADGA SLAT +RARG+YG RI AL  +V+KGD   V +E+N F+LFNSGVY  +     + +K+A A  +    A S GD + +KS+YA +MK  D + G++G      QG+ +E+D+K + P  G++Y
Sbjct:   72 AFADGAVSLATVARARGLYGGRIAALSDSVNKGDLEAVEAEKNAFILFNSGVYARNGPVDRKNKKVAVAATNSLFDAVSKGDKAGVKSAYAEFMKVADIQPGYSGKDKDFTQGYSTEYDWKYKDPKKGSIY 202
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BLAST of mRNA_H-elongata_contig11888.1462.1 vs. uniprot
Match: A0A7S2C001_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C001_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 6.340e-19
Identity = 78/203 (38.42%), Postives = 115/203 (56.65%), Query Frame = 1 
Query:    1 MKTVCVALALSSPCAAFMNPMINVRPTTSSSMTMTSSEPISR-------AQALNNVFASGAAVIAAAAVPGVAFADGASSLATKSRARGIYGSRIEALKGAVDKGDTATVLSEQNCFMLFNSGVYKSDKAKFAEAEKL----ARAVVSAASAGDASALKSSYASYMKYIDNKS-GFNG--AGDGQGFGSEFDYKNRTPLGTVY 567
            M++  VALAL +  +AF   ++  R T S S     +E + R       A  L  VFA   A          A ADGA SLAT +R+RGIYG+R+  L GAV+KGD   VL+E+N F+LFN+    +++ K  E +K+      AV++AA+ GD +ALK++YA Y+K     +  + G  A   QG+ +++D+K RT  GT+Y
Sbjct:   16 MRSFIVALALLASASAFSPTILRARSTVSMS-----AENVDRRGMITKTAGVLGGVFAGAQA----------ANADGAVSLATMARSRGIYGTRVADLAGAVEKGDFEAVLAEKNAFVLFNNS---NNRPKNKEEKKINAVKQEAVLAAAAKGDKAALKAAYADYIKTASLPNPAYKGRDADYSQGYSNDYDWKARTNRGTIY 200
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BLAST of mRNA_H-elongata_contig11888.1462.1 vs. uniprot
Match: A0A7S2FV99_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FV99_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 5.600e-17
Identity = 73/189 (38.62%), Postives = 108/189 (57.14%), Query Frame = 1 
Query:   16 VALALSSPCAAFMNPMINVRPTTSSSMTMTSSEPISRAQALNNVFASGAAVIAAAAVPGVAFADGASSLATKSRARGIYGSRIEALKGAVDKGDTATVLSEQNCFMLFNSGVYKSDKAKFAEAEKLA--RAVVSAASAGDASALKSSYASYMKYIDNKSGFNGAGDG--QGFGSEFDYKNRTPLGTVYQ 570
            +AL L++  +AF  P+ N     + S  + S+E  SR   +  V A GA V A++A    A ADGA S++T+ R++GIYG+RI AL  AV  GD A V  ++N F+LF SG + +   K    E  A    + +A S  D +ALKSSYA ++K  D +  ++       QG+ +E+D+K  TP GT+YQ
Sbjct:   26 IALCLAASASAF-TPVFN----RAQSTVVMSAEQSSRRGFVQTVGAFGAMVGASSA----ALADGAQSMSTRQRSKGIYGARIVALDQAVAAGDFAAVEEQKNAFVLFVSGGFTTPSGKVIAKELKADYANIFAAVSNKDQAALKSSYAEFVKKADIRPLYDEKTKAYTQGYSTEYDWKAYTPKGTIYQ 205
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BLAST of mRNA_H-elongata_contig11888.1462.1 vs. uniprot
Match: A0A7S3PVM6_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PVM6_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 2.240e-16
Identity = 72/192 (37.50%), Postives = 107/192 (55.73%), Query Frame = 1 
Query:    1 MKTVCVALALSSPCAAFMNPMINVRPTTSSSMTMTSSEPISRAQALNNVFASGAAVIAAAAVPGVAFADGASSLATKSRARGIYGSRIEALKGAVDKGDTATVLSEQNCFMLFNSGVYKSDKAKFAEAEKLARAVVSAASAGDASALKSSYASYMKYIDNKSGFN---GAGDGQGFGSEFDYKNRTPLGTVY 567
            MK +  ALAL+S  AAF  P    R TT+ SM         R  A   +  +GA +   A VP +A AD A+ +   +RARG+YGSRI  L GAV  GD + + +E++ F+LFNSG Y ++K     A     A+ +A  +GD +A+KS+Y +Y+    NK        + +GQG+ S+FD++ R+  G +Y
Sbjct:    1 MKFIVAALALTSV-AAFA-PSSLERSTTALSM--------DRRSAFGQIATAGAVL---AGVPAIASADVAAQI---NRARGLYGSRIANLAGAVAAGDYSAIAAEKSAFILFNSGAYPNNKPAQKNAVSQTNAIFAAIRSGDKAAVKSAYETYV--TTNKINILPTVDSNEGQGYCSDFDFRVRSSAGAIY 174
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11888.1462.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5JBE3_9PHAE5.980e-8474.35PSII_Pbs31 domain-containing protein n=2 Tax=Ectoc... [more]
A0A7S2S7V4_9STRA1.210e-1945.04Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2C001_9STRA6.340e-1938.42Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2FV99_9STRA5.600e-1738.62Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S3PVM6_9STRA2.240e-1637.50Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig11888contigH-elongata_contig11888:5652..8479 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score262.3
Seed ortholog evalue1.7e-67
Seed eggNOG ortholog2880.D7G7Q2
EggNOG OGs2BYH2@1,2S4K1@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorychloroplast
Ec32 ortholog descriptionimm downregulated 23
Ec32 orthologEc-06_000790.1
Exons3
Model size570
Cds size570
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig11888.1462.1prot_H-elongata_contig11888.1462.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig11888 5652..8479 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929695.65516-CDS-H-elongata_contig11888:5651..56761622929695.65516-CDS-H-elongata_contig11888:5651..5676Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11888 5652..5676 -
1691679122.2047806-CDS-H-elongata_contig11888:5651..56761691679122.2047806-CDS-H-elongata_contig11888:5651..5676Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11888 5652..5676 -
1622929695.6765177-CDS-H-elongata_contig11888:7597..80531622929695.6765177-CDS-H-elongata_contig11888:7597..8053Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11888 7598..8053 -
1691679122.2263827-CDS-H-elongata_contig11888:7597..80531691679122.2263827-CDS-H-elongata_contig11888:7597..8053Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11888 7598..8053 -
1622929695.6909144-CDS-H-elongata_contig11888:8390..84791622929695.6909144-CDS-H-elongata_contig11888:8390..8479Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11888 8391..8479 -
1691679122.2355053-CDS-H-elongata_contig11888:8390..84791691679122.2355053-CDS-H-elongata_contig11888:8390..8479Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11888 8391..8479 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig11888.1462.1

>prot_H-elongata_contig11888.1462.1 ID=prot_H-elongata_contig11888.1462.1|Name=mRNA_H-elongata_contig11888.1462.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=190bp
MKTVCVALALSSPCAAFMNPMINVRPTTSSSMTMTSSEPISRAQALNNVF
ASGAAVIAAAAVPGVAFADGASSLATKSRARGIYGSRIEALKGAVDKGDT
ATVLSEQNCFMLFNSGVYKSDKAKFAEAEKLARAVVSAASAGDASALKSS
YASYMKYIDNKSGFNGAGDGQGFGSEFDYKNRTPLGTVYQ
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mRNA from alignment at H-elongata_contig11888:5652..8479-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig11888.1462.1 ID=mRNA_H-elongata_contig11888.1462.1|Name=mRNA_H-elongata_contig11888.1462.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2828bp|location=Sequence derived from alignment at H-elongata_contig11888:5652..8479- (Himanthalia elongata Himel1 dioecious)
ATGAAGACTGTTTGCGTTGCTCTCGCCTTGTCCTCACCCTGTGCTGCGTT
CATGAACCCTATGATCAACGTGCGGCCGACTACTTCCAGGTGAGCACCTA
ATCCCGCCAAAGCGATCGCTTTATTCTGCGTTCCGCTCGTAAATGAAGAG
ATCGAGGAGGCTGAAATATGGGTGCTTTATGAGTGCCCTGCTCTCAGTGA
AGTTAATCAGAGGGTAGAGATCCTTGGGTTCAAGCAGTAAGAGGCTTTGT
AGCGTGCAAGGGTAGATTTCTGTCTTCAGGACTCTATCTACGAGTAAGGG
TAATCGAGGGGCCTTTCGCTTCATGAGTCAAATGTTTTAGGTGATTCAGA
TTTAGAGCTTCTGTACCTCAAATGCGCCTTCGTCGTGGCGCCTCCCTTTC
GTGCTCCTCTCCCTACCGCTACGCAGCTCGATGACCATGACTTCCAGTGA
GCCCATCTCGAGAGCACAGGCCCTCAATAACGTTTTCGCGTCGGGGGCCG
CGGTAATCGCCGCTGCCGCCGTACCCGGCGTCGCTTTCGCCGACGGTGCC
TCTTCCCTGGCTACCAAGTCCCGAGCGCGAGGGATCTACGGCTCCCGCAT
CGAGGCTCTCAAGGGCGCTGTCGACAAGGGAGACACGGCAACGGTGTTGA
GCGAGCAAAACTGCTTCATGCTCTTCAACTCGGGTGTGTACAAATCTGAC
AAGGCCAAGTTTGCTGAGGCGGAAAAGCTGGCAAGAGCCGTTGTCTCGGC
GGCTAGTGCAGGCGACGCTTCAGCTCTAAAGTCGTCGTACGCTTCGTACA
TGAAGTACATCGACAACAAGAGCGGCTTCAACGGAGCTGGGGATGGTCAG
GGCTTCGGATCTGAGTTCGACTACAAGAACAGGTGCTTGCCTTTCCGATC
CGCCGAAATCATTTTTCTGTAGGAATATCACTGCTGTTTTGTCCTTGCCT
TTGGATGTAGGGCCGAAGACTGGAAGGCTGAAGCACTACCCCCTCCCCGA
TAACGTTGTAGCGCGCGCATGTGTCAAAACTGATCCGTGAAAGATGAACG
TCAAGCGTACTTGCGTTTGTTATTATTTTCCTTTATATTTGAGTATATTT
TGAGGAGCGTTTTAAGCACAGAGGCTTCCTGCTGAGTCAGATTCGCGCGA
CGCTCAAAGCTACGAGATTTAATCTCTCTACCAAACATACATCGGAGAAT
GTTTTTGGAAATAAATCTCTGCAAACGTGCTGGTGCGTTAGTGGCTGCTT
CATTGCCCACTTCACCGAAGCTACTTCCAAGAGAAAACATGAAACTACCG
AAGATAATATAAACTTGTAATATTTATTACTAAAATGATAAATTGTACGG
TATGAATAGGAGTTAAAATTCGATGAAAACGTCGAAAAGACTTATTCCCG
GTAGGAGATTCCTTAATTTCTATAGGGGGCGCCGTGTCAACTGCAGCAAA
CGTAGTAATTTGTACACAGAGACATATCTATCGGGACTGACCAATATATT
ATCTAATTTGCCTACTATTCCTCTCTACCGCACCCTAATTCATATACATA
CGCCTAACAGCCCCTCCTAACTACTACTGCGATTCACTCTCCAGGCCCTA
GTTTGATGTCTGCGTTGATCGGTGTCGAGTCGATGACCCTCTAACGGCCT
CTCTGGATATTTTATTTTTATTTTTAAATCTTCAATTTATATAGTACAGT
AGTGAACTAGAATCAAAATGTTACTAGTGTAAAATGTAAAATCACCTAAT
AGGTTAGGCCATACGCTCCCAGAAAGGTATTCACGTTTTTCCAATAGCTA
ATAGCTACAATCCAAAATCAACCGAGATATACCTCTAAAAAAATAAGCAA
TTACTTATTTTCCTAATTTTTACCCTATATCTATTATCAACCCCCTATCT
AGTTCGCGGCTAATCTACGTAGATCAACTCACCAGCACTCTCTATACTGT
ACTCTGGCTTGGCGACATAGTCCCCACATGACGTCATGATGAATTATGTA
AGTGTACTGTACGGGATAATAATGGGAACATCGACATTACACCGTTTACC
CGATGAAATTACTATTGGGGAACACGAATTATCACATCTGACGATTTTGT
GCTCAAAGGTAGTGTTATCTACAAATTCGAACTTGACGATAGTTGATCCC
CTGGATTGCATCTCTCACGGTGCTACGAAGGCATGGATGTTCGGAGGGTT
GGAATATGAGTTCATATGTTTTTTTAAGAAAAAAACTCCAGAGTTCCAAT
TTCTTCAACTTCATTTTTTTTTCTTAAAGGTGTTGTTTTCATTTTTCTTA
CAAACTTTGAACTCAGTCAAACAGAAATATTGACAATTTCGCAATATTTA
CCGGCTTCTTCAGTAAAAAGCTAGGGACCAAGTTTCGCCATTTTCGAACG
ATAGCAGAGTAAATGTCGACAGCATTGTCTCGTTGGGGGTTTTTAGTCGT
GTATTTTTCTGAATATTCGTGTTAACACGCCACACTTCCCTCTAGCGAAA
CAGACACGGGCATGCGATCATTATGATACGAAGTCTTTCCCCCGTCCATA
TACCCAGTAGCGCAATGCCACTGATCGATGTGTCATCGTATTTGGGGTGA
GATGTTGGCTGTTTCGTACCTCTTTGCGGGCAACATCGTCGGAATGACAT
TGCGTCGCTCGTCTATAATAGCTCACGTTCTCAAAGCGATAATCCGCTGG
CGGCCCCGCTGTTGCTCTTCCCTCCCTCTGTTGCTTTTTCTTGTCCCCGT
GCTCACTCGGGGGATCGGCCTCTTCGGTGTCCATCCATTCCGCGATTCCA
CAGGACGCCGTTGGGCACCGTCTACCAG
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Coding sequence (CDS) from alignment at H-elongata_contig11888:5652..8479-

>mRNA_H-elongata_contig11888.1462.1 ID=mRNA_H-elongata_contig11888.1462.1|Name=mRNA_H-elongata_contig11888.1462.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1140bp|location=Sequence derived from alignment at H-elongata_contig11888:5652..8479- (Himanthalia elongata Himel1 dioecious)
ATGAAGACTGTTTGCGTTGCTCTCGCCTTGTCCTCACCCTGTGCTGCGTT
CATGAACCCTATGATCAACGTGCGGCCGACTACTTCCAGATGAAGACTGT
TTGCGTTGCTCTCGCCTTGTCCTCACCCTGTGCTGCGTTCATGAACCCTA
TGATCAACGTGCGGCCGACTACTTCCAGCTCGATGACCATGACTTCCAGT
GAGCCCATCTCGAGAGCACAGGCCCTCAATAACGTTTTCGCGTCGGGGGC
CGCGGTAATCGCCGCTGCCGCCGTACCCGGCGTCGCTTTCGCCGACGGTG
CCTCTTCCCTGGCTACCAAGTCCCGAGCGCGAGGGATCTACGGCTCCCGC
ATCGAGGCTCTCAAGGGCGCTGTCGACAAGGGAGACACGGCAACGGTGTT
GAGCGAGCAAAACTGCTTCATGCTCTTCAACTCGGGTGTGTACAAATCTG
ACAAGGCCAAGTTTGCTGAGGCGGAAAAGCTGGCAAGAGCCGTTGTCTCG
GCGGCTAGTGCAGGCGACGCTTCAGCTCTAAAGTCGTCGTACGCTTCGTA
CATGAAGTACATCGACAACAAGAGCGGCTTCAACGGAGCTGGGGATGGTC
AGGGCTTCGGATCTGAGTTCGACTACAAGAACAGCTCGATGACCATGACT
TCCAGTGAGCCCATCTCGAGAGCACAGGCCCTCAATAACGTTTTCGCGTC
GGGGGCCGCGGTAATCGCCGCTGCCGCCGTACCCGGCGTCGCTTTCGCCG
ACGGTGCCTCTTCCCTGGCTACCAAGTCCCGAGCGCGAGGGATCTACGGC
TCCCGCATCGAGGCTCTCAAGGGCGCTGTCGACAAGGGAGACACGGCAAC
GGTGTTGAGCGAGCAAAACTGCTTCATGCTCTTCAACTCGGGTGTGTACA
AATCTGACAAGGCCAAGTTTGCTGAGGCGGAAAAGCTGGCAAGAGCCGTT
GTCTCGGCGGCTAGTGCAGGCGACGCTTCAGCTCTAAAGTCGTCGTACGC
TTCGTACATGAAGTACATCGACAACAAGAGCGGCTTCAACGGAGCTGGGG
ATGGTCAGGGCTTCGGATCTGAGTTCGACTACAAGAACAGGACGCCGTTG
GGCACCGTCTACCAGGACGCCGTTGGGCACCGTCTACCAG
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