prot_H-elongata_contig6967.14616.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig6967.14616.1
Unique Nameprot_H-elongata_contig6967.14616.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length377
Homology
BLAST of mRNA_H-elongata_contig6967.14616.1 vs. uniprot
Match: D8LS07_ECTSI (RING-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LS07_ECTSI)

HSP 1 Score: 125 bits (314), Expect = 1.310e-28
Identity = 52/66 (78.79%), Postives = 57/66 (86.36%), Query Frame = 0
Query:  197 GGQVVRACELNPSCSICLFEYYLDEEVTLLPCGHLYHTECIDIWMSDHVDCPYCRADINVWATIGG 262
            G QV+RA ELN SCS+CLF Y++DE VTLLPCGHLYHTECIDIWM DHVDCPYCRAD+NVW   GG
Sbjct:  309 GRQVIRASELNASCSVCLFGYFVDEAVTLLPCGHLYHTECIDIWMRDHVDCPYCRADMNVWCNSGG 374          
BLAST of mRNA_H-elongata_contig6967.14616.1 vs. uniprot
Match: D8LAX1_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAX1_ECTSI)

HSP 1 Score: 77.8 bits (190), Expect = 5.260e-12
Identity = 30/57 (52.63%), Postives = 40/57 (70.18%), Query Frame = 0
Query:  200 VVRACELNPSCSICLFEYYLDEEVTLLPCGHLYHTECIDIWMSDHVDCPYCRADINV 256
            VVR  EL   C+ICL +Y   EEV +LPC H++H EC+D+W+  H  CPYC+ D+NV
Sbjct:  313 VVRVSELPDVCAICLGQYATGEEVHVLPCLHIFHAECLDVWIRGHPSCPYCKGDLNV 369          
BLAST of mRNA_H-elongata_contig6967.14616.1 vs. uniprot
Match: A0A6H5JT04_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT04_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 6.400e-12
Identity = 30/57 (52.63%), Postives = 40/57 (70.18%), Query Frame = 0
Query:  200 VVRACELNPSCSICLFEYYLDEEVTLLPCGHLYHTECIDIWMSDHVDCPYCRADINV 256
            VVR  EL   C+ICL +Y   EEV +LPC H++H EC+D+W+  H  CPYC+ D+NV
Sbjct:  407 VVRVSELPDVCAICLGQYATGEEVHVLPCLHIFHAECLDVWICGHPSCPYCKGDLNV 463          
BLAST of mRNA_H-elongata_contig6967.14616.1 vs. uniprot
Match: A0A7S2HAW0_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HAW0_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 3.020e-10
Identity = 28/47 (59.57%), Postives = 34/47 (72.34%), Query Frame = 0
Query:  208 PSCSICLFEYYLDEEVTLLPCGHLYHTECIDIWMSDHVDCPYCRADI 254
            PSCSICL EY   E +T LPCGH+YH EC+  W+S+HV CP C  D+
Sbjct:  372 PSCSICLCEYEEGESLTRLPCGHVYHEECVSAWVSNHVRCPLCNYDL 418          
BLAST of mRNA_H-elongata_contig6967.14616.1 vs. uniprot
Match: A0A7S1VRK2_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VRK2_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 4.730e-10
Identity = 26/47 (55.32%), Postives = 34/47 (72.34%), Query Frame = 0
Query:  208 PSCSICLFEYYLDEEVTLLPCGHLYHTECIDIWMSDHVDCPYCRADI 254
            PSC+ICL EY   E++  LPCGH+YH EC+D W ++HV CP C  D+
Sbjct:  148 PSCTICLGEYEEGEKLVKLPCGHVYHEECVDSWTTNHVRCPLCNFDL 194          
BLAST of mRNA_H-elongata_contig6967.14616.1 vs. uniprot
Match: D8SNW3_SELML (RING-type domain-containing protein (Fragment) n=3 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8SNW3_SELML)

HSP 1 Score: 64.3 bits (155), Expect = 1.280e-9
Identity = 23/48 (47.92%), Postives = 35/48 (72.92%), Query Frame = 0
Query:  208 PSCSICLFEYYLDEEVTLLP-CGHLYHTECIDIWMSDHVDCPYCRADI 254
            P C++CL ++  +E+V LLP CGHL+H +CID+W+  H  CP CR ++
Sbjct:   28 PECTVCLLQFEENEQVRLLPDCGHLFHADCIDMWLETHSTCPLCRRNL 75          
BLAST of mRNA_H-elongata_contig6967.14616.1 vs. uniprot
Match: A0A7R9Z645_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9Z645_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 1.380e-9
Identity = 30/58 (51.72%), Postives = 37/58 (63.79%), Query Frame = 0
Query:  208 PSCSICLFEYYLDEEVTLLPCGHLYHTECIDIWMSDHVDCPYCRADINVWATIGGHAA 265
            PSCSICL +Y   E +  LPCGH+YH EC+  W+S+HV CP C  D+      GGH A
Sbjct:  332 PSCSICLGDYEEGERLIRLPCGHVYHEECVSAWVSNHVRCPLCNYDLEA----GGHEA 385          
BLAST of mRNA_H-elongata_contig6967.14616.1 vs. uniprot
Match: A0A804JMS8_MUSAM ((wild Malaysian banana) hypothetical protein n=1 Tax=Musa acuminata subsp. malaccensis TaxID=214687 RepID=A0A804JMS8_MUSAM)

HSP 1 Score: 68.9 bits (167), Expect = 2.400e-9
Identity = 28/54 (51.85%), Postives = 40/54 (74.07%), Query Frame = 0
Query:  210 CSICLFEYYLDEEVTLLP-CGHLYHTECIDIWMSDHVDCPYCRADINVWATIGG 262
            C++CL E+  D+E+ LLP C HL+HT+CID+W++ HV CP CRA++   AT  G
Sbjct:  143 CAVCLSEFDDDDELRLLPRCSHLFHTDCIDVWLASHVTCPVCRANLAEPATADG 196          
BLAST of mRNA_H-elongata_contig6967.14616.1 vs. uniprot
Match: A0A7S2UAS3_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UAS3_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 6.110e-9
Identity = 26/57 (45.61%), Postives = 35/57 (61.40%), Query Frame = 0
Query:  198 GQVVRACELNPSCSICLFEYYLDEEVTLLPCGHLYHTECIDIWMSDHVDCPYCRADI 254
            G    A E  PSCSICL EY + + +  LPCGH+YH +C+  W  +HV CP C  ++
Sbjct:  315 GLTTIALEEAPSCSICLSEYEVGDSMVKLPCGHVYHADCVSAWTQNHVRCPLCNFNL 371          
BLAST of mRNA_H-elongata_contig6967.14616.1 vs. uniprot
Match: A0A0D3E8S7_BRAOL (RING-type domain-containing protein n=8 Tax=Brassica TaxID=3705 RepID=A0A0D3E8S7_BRAOL)

HSP 1 Score: 64.3 bits (155), Expect = 6.110e-9
Identity = 26/48 (54.17%), Postives = 35/48 (72.92%), Query Frame = 0
Query:  210 CSICLFEYYLDEEVTL-LPCGHLYHTECIDIWMSDHVDCPYCRADINV 256
            C++CL EY  DE + L LPCGH++H +C+DIW+S    CP CRAD+ V
Sbjct:   87 CAVCLNEYKEDEMLRLILPCGHVFHVDCVDIWLSYRSTCPICRADVIV 134          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6967.14616.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LS07_ECTSI1.310e-2878.79RING-type domain-containing protein n=2 Tax=Ectoca... [more]
D8LAX1_ECTSI5.260e-1252.63RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JT04_9PHAE6.400e-1252.63RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A7S2HAW0_9STRA3.020e-1059.57Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A7S1VRK2_9STRA4.730e-1055.32Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
D8SNW3_SELML1.280e-947.92RING-type domain-containing protein (Fragment) n=3... [more]
A0A7R9Z645_9STRA1.380e-951.72Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A804JMS8_MUSAM2.400e-951.85(wild Malaysian banana) hypothetical protein n=1 T... [more]
A0A7S2UAS3_9STRA6.110e-945.61Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A0D3E8S7_BRAOL6.110e-954.17RING-type domain-containing protein n=8 Tax=Brassi... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 210..250
e-value: 8.8E-7
score: 38.5
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 209..251
e-value: 2.5E-11
score: 43.7
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 210..251
score: 12.593
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 178..256
e-value: 3.1E-16
score: 60.8
NoneNo IPR availablePANTHERPTHR45676FAMILY NOT NAMEDcoord: 207..264
NoneNo IPR availablePANTHERPTHR45676:SF33RING-H2 FINGER PROTEIN ATL54coord: 207..264
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 206..257

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig6967contigH-elongata_contig6967:1359..6148 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig6967.14616.1mRNA_H-elongata_contig6967.14616.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig6967 1317..7006 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig6967.14616.1 ID=prot_H-elongata_contig6967.14616.1|Name=mRNA_H-elongata_contig6967.14616.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=377bp
MTVDEGEMNGLHGVTRKARASCVDFKFDPMATFQEKPLGRGFEPYPPPPE
ATAEAEAPNSPDGDGDDGDDGKSAGRKRRRGIIPWLSWWGRNDQEIFPEE
MSMSSDEPSTSASYPSGAIVADGEEIAVPSCGESASHDDLSRAFCSVSVE
AGPVVEAVMTGSASGGDAGVEAAEAGASVSEGAWEATETRTGPGARGGQV
VRACELNPSCSICLFEYYLDEEVTLLPCGHLYHTECIDIWMSDHVDCPYC
RADINVWATIGGHAAANGAGAGSSPNRAGPETAAAVSGRVFTAPVSAVPA
SAGASTTILRARPALPVEVARETDADSREVDIPLAAGWRFGLPEGCRPIG
WCCDFGHPFSGRQARRPARTAHLSTP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD