mRNA_H-elongata_contig69639.14612.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-elongata_contig69639.14612.1
Unique Name	mRNA_H-elongata_contig69639.14612.1
Type	mRNA
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)

Homology

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BLAST of mRNA_H-elongata_contig69639.14612.1 vs. uniprot
Match: A0A6V1P6C6_HETAK (Histone H3 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1P6C6_HETAK)

HSP 1 Score: 251 bits (641), Expect = 5.460e-84
Identity = 134/141 (95.04%), Postives = 139/141 (98.58%), Query Frame = 1

Query:    1 LLQDPMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 423
            ++ + MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLR+QGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:    2 IITETMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRYQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 142

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BLAST of mRNA_H-elongata_contig69639.14612.1 vs. uniprot
Match: W4GZ05_9STRA (Histone H3 n=38 Tax=Oomycota TaxID=4762 RepID=W4GZ05_9STRA)

HSP 1 Score: 251 bits (640), Expect = 6.340e-84
Identity = 135/136 (99.26%), Postives = 136/136 (100.00%), Query Frame = 1

Query:   16 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 423
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 136

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BLAST of mRNA_H-elongata_contig69639.14612.1 vs. uniprot
Match: A0A1Z5K8H0_FISSO (Histone H3 n=2 Tax=Bacillariophyta TaxID=2836 RepID=A0A1Z5K8H0_FISSO)

HSP 1 Score: 249 bits (636), Expect = 2.580e-83
Identity = 134/136 (98.53%), Postives = 135/136 (99.26%), Query Frame = 1

Query:   16 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 423
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHRYRPGTVALREIRRYQKST+LLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRRYQKSTDLLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 136

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BLAST of mRNA_H-elongata_contig69639.14612.1 vs. uniprot
Match: A0A7S1BJN3_9STRA (Histone H3 n=22 Tax=Eukaryota TaxID=2759 RepID=A0A7S1BJN3_9STRA)

HSP 1 Score: 249 bits (637), Expect = 2.910e-83
Identity = 134/136 (98.53%), Postives = 136/136 (100.00%), Query Frame = 1

Query:   16 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 423
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKST+LLIRKLPFQRLVREIAQDFK+DLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:   15 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTDLLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 150

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BLAST of mRNA_H-elongata_contig69639.14612.1 vs. uniprot
Match: K0S7I6_THAOC (Histone domain-containing protein n=8 Tax=Bacillariophyta TaxID=2836 RepID=K0S7I6_THAOC)

HSP 1 Score: 251 bits (640), Expect = 7.390e-83
Identity = 135/136 (99.26%), Postives = 136/136 (100.00%), Query Frame = 1

Query:   16 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 423
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKST+LLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:   74 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTDLLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 209

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BLAST of mRNA_H-elongata_contig69639.14612.1 vs. uniprot
Match: D7G4I9_ECTSI (Similar to histone H3.2 n=2 Tax=PX clade TaxID=569578 RepID=D7G4I9_ECTSI)

HSP 1 Score: 247 bits (631), Expect = 1.490e-82
Identity = 134/136 (98.53%), Postives = 135/136 (99.26%), Query Frame = 1

Query:   16 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 423
            MARTKQTARKSTG +APRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:    1 MARTKQTARKSTGRQAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 136

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BLAST of mRNA_H-elongata_contig69639.14612.1 vs. uniprot
Match: A7RJG4_NEMVE (Predicted protein n=6 Tax=Eumetazoa TaxID=6072 RepID=A7RJG4_NEMVE)

HSP 1 Score: 247 bits (630), Expect = 2.120e-82
Identity = 132/136 (97.06%), Postives = 135/136 (99.26%), Query Frame = 1

Query:   16 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 423
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRL+REIAQDFK+DLRFQ SAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLIREIAQDFKTDLRFQSSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136

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BLAST of mRNA_H-elongata_contig69639.14612.1 vs. uniprot
Match: A0A2G5ECG9_AQUCA (Histone domain-containing protein (Fragment) n=2 Tax=Aquilegia coerulea TaxID=218851 RepID=A0A2G5ECG9_AQUCA)

HSP 1 Score: 248 bits (632), Expect = 2.690e-82
Identity = 132/141 (93.62%), Postives = 137/141 (97.16%), Query Frame = 1

Query:    1 LLQDPMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 423
            +  DPMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHR+RPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFK+DLRFQ SAV ALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:   24 IFLDPMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 164

[Close]

BLAST of mRNA_H-elongata_contig69639.14612.1 vs. uniprot
Match: A0A0C9RCG0_9HYME (Histone H3 (Fragment) n=2 Tax=Bilateria TaxID=33213 RepID=A0A0C9RCG0_9HYME)

HSP 1 Score: 247 bits (630), Expect = 2.770e-82
Identity = 132/138 (95.65%), Postives = 136/138 (98.55%), Query Frame = 1

Query:   10 DPMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 423
            D MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQ SAV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:    7 DAMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 144

[Close]

BLAST of mRNA_H-elongata_contig69639.14612.1 vs. uniprot
Match: A0A0C9RWZ2_9HYME (Histone H3 (Fragment) n=3 Tax=Endopterygota TaxID=33392 RepID=A0A0C9RWZ2_9HYME)

HSP 1 Score: 247 bits (630), Expect = 2.870e-82
Identity = 132/138 (95.65%), Postives = 136/138 (98.55%), Query Frame = 1

Query:   10 DPMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 423
            D MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQ SAV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:    8 DAMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 145

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig69639.14612.1 vs. uniprot

BLAST of mRNA_H-elongata_contig69639.14612.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6V1P6C6_HETAK	5.460e-84	95.04	Histone H3 n=1 Tax=Heterosigma akashiwo TaxID=2829...	[more]
W4GZ05_9STRA	6.340e-84	99.26	Histone H3 n=38 Tax=Oomycota TaxID=4762 RepID=W4GZ...	[more]
A0A1Z5K8H0_FISSO	2.580e-83	98.53	Histone H3 n=2 Tax=Bacillariophyta TaxID=2836 RepI...	[more]
A0A7S1BJN3_9STRA	2.910e-83	98.53	Histone H3 n=22 Tax=Eukaryota TaxID=2759 RepID=A0A...	[more]
K0S7I6_THAOC	7.390e-83	99.26	Histone domain-containing protein n=8 Tax=Bacillar...	[more]
D7G4I9_ECTSI	1.490e-82	98.53	Similar to histone H3.2 n=2 Tax=PX clade TaxID=569...	[more]
A7RJG4_NEMVE	2.120e-82	97.06	Predicted protein n=6 Tax=Eumetazoa TaxID=6072 Rep...	[more]
A0A2G5ECG9_AQUCA	2.690e-82	93.62	Histone domain-containing protein (Fragment) n=2 T...	[more]
A0A0C9RCG0_9HYME	2.770e-82	95.65	Histone H3 (Fragment) n=2 Tax=Bilateria TaxID=3321...	[more]
A0A0C9RWZ2_9HYME	2.870e-82	95.65	Histone H3 (Fragment) n=3 Tax=Endopterygota TaxID=...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig69639	contig	H-elongata_contig69639:1256..1681 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	256.5
Seed ortholog evalue	6.9e-66
Seed eggNOG ortholog	2880.D7FWI7
KEGG ko	ko:K11253
KEGG Pathway	ko05034,ko05202,ko05322,map05034,map05202,map05322
GOs	GO:0000785,GO:0000786,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006996,GO:0008150,GO:0009987,GO:0016043,GO:0022607,GO:0031490,GO:0031491,GO:0031492,GO:0031497,GO:0032991,GO:0032993,GO:0034622,GO:0034728,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044427,GO:0044446,GO:0044464,GO:0044815,GO:0044877,GO:0051276,GO:0065003,GO:0065004,GO:0071103,GO:0071824,GO:0071840,GO:0097159,GO:1901363
EggNOG free text desc.	protein heterodimerization activity
EggNOG OGs	COG2036@1,KOG1745@2759
COG Functional cat.	B
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko03036,ko04147
Hectar predicted targeting category	other localisation
Exons	1
Model size	426
Cds size	411
Stop	1
Start	1

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622931093.9448848-CDS-H-elongata_contig69639:1255..1666	1622931093.9448848-CDS-H-elongata_contig69639:1255..1666	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig69639 1256..1666 -
1691679695.279543-CDS-H-elongata_contig69639:1255..1666	1691679695.279543-CDS-H-elongata_contig69639:1255..1666	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig69639 1256..1666 -

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622931093.9589615-UTR-H-elongata_contig69639:1666..1681	1622931093.9589615-UTR-H-elongata_contig69639:1666..1681	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig69639 1667..1681 -
1691679695.2896252-UTR-H-elongata_contig69639:1666..1681	1691679695.2896252-UTR-H-elongata_contig69639:1666..1681	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig69639 1667..1681 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig69639.14612.1	prot_H-elongata_contig69639.14612.1	Himanthalia elongata Himel1 dioecious	polypeptide	H-elongata_contig69639 1256..1666 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-elongata_contig69639:1256..1681-
coding sequence from alignment at H-elongata_contig69639:1256..1681-

protein sequence of mRNA_H-elongata_contig69639.14612.1

>prot_H-elongata_contig69639.14612.1 ID=prot_H-elongata_contig69639.14612.1|Name=mRNA_H-elongata_contig69639.14612.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=137bp
MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALR
EIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAY
LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS*

mRNA from alignment at H-elongata_contig69639:1256..1681-

Legend: UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-elongata_contig69639.14612.1 ID=mRNA_H-elongata_contig69639.14612.1|Name=mRNA_H-elongata_contig69639.14612.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=426bp|location=Sequence derived from alignment at H-elongata_contig69639:1256..1681- (Himanthalia elongata Himel1 dioecious)
TTGCTTCAGGATCCAATGGCTCGCACGAAGCAGACCGCTCGTAAGTCAAC
CGGAGGCAAGGCTCCGCGCAAGCAGCTGGCAACAAAGGCTGCGCGAAAGT
CTGCCCCCGCAACAGGTGGTGTGAAGAAGCCCCACCGCTACAGACCAGGC
ACCGTGGCCTTGCGTGAAATCCGCCGTTATCAGAAGTCAACTGAGCTCCT
AATTCGCAAGTTGCCGTTCCAGCGTTTGGTGCGCGAGATCGCCCAGGACT
TCAAGAGTGACCTGCGTTTTCAGGGCTCCGCCGTGTTGGCTCTACAGGAG
GCCGCCGAGGCCTACCTTGTTGGTCTGTTTGAAGACACCAACCTGTGCGC
CATCCACGCCAAGCGAGTAACGATCATGCCCAAGGACATCCAGCTGGCCA
GGCGCATCCGCGGAGAGCGCTCGTAG

Coding sequence (CDS) from alignment at H-elongata_contig69639:1256..1681-

>mRNA_H-elongata_contig69639.14612.1 ID=mRNA_H-elongata_contig69639.14612.1|Name=mRNA_H-elongata_contig69639.14612.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=822bp|location=Sequence derived from alignment at H-elongata_contig69639:1256..1681- (Himanthalia elongata Himel1 dioecious)
ATGGCTCGCACGAAGCAGACCGCTCGTAAGTCAACCGGAGGCAAGGCTCC
GCGCAAGCAGCTGGCAACAAAGGCTGCGCGAAAGTCTGCCCCCGCAACAG
GTGGTGTGAAGAAGCCCCACCGCTACAGACCAGGCACCGTGGCCTTGCGT
GAAATCCGCCGTTATCAGAAGTCAACTGAGCTCCTAATTCGCAAGTTGCC
GTTCCAGCGTTTGGTGCGCGAGATCGCCCAGGACTTCAAGAGTGACCTGC
GTTTTCAGGGCTCCGCCGTGTTGGCTCTACAGGAGGCCGCCGAGGCCTAC
CTTGTTGGTCTGTTTGAAGACACCAACCTGTGCGCCATCCACGCCAAGCG
AGTAACGATCATGCCCAAGGACATCCAGCTGGCCAGGCGCATCCGCGGAG
AGCGCTCGTAGATGGCTCGCACGAAGCAGACCGCTCGTAAGTCAACCGGA
GGCAAGGCTCCGCGCAAGCAGCTGGCAACAAAGGCTGCGCGAAAGTCTGC
CCCCGCAACAGGTGGTGTGAAGAAGCCCCACCGCTACAGACCAGGCACCG
TGGCCTTGCGTGAAATCCGCCGTTATCAGAAGTCAACTGAGCTCCTAATT
CGCAAGTTGCCGTTCCAGCGTTTGGTGCGCGAGATCGCCCAGGACTTCAA
GAGTGACCTGCGTTTTCAGGGCTCCGCCGTGTTGGCTCTACAGGAGGCCG
CCGAGGCCTACCTTGTTGGTCTGTTTGAAGACACCAACCTGTGCGCCATC
CACGCCAAGCGAGTAACGATCATGCCCAAGGACATCCAGCTGGCCAGGCG
CATCCGCGGAGAGCGCTCGTAG