mRNA_H-elongata_contig69543.14601.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig69543.14601.1
Unique NamemRNA_H-elongata_contig69543.14601.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig69543.14601.1 vs. uniprot
Match: A0A6H5JVI3_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVI3_9PHAE)

HSP 1 Score: 136 bits (343), Expect = 4.400e-33
Identity = 84/206 (40.78%), Postives = 124/206 (60.19%), Query Frame = 1 
Query:  121 ETKRDGASEITAPGYRVYFSGDCSGIKWEKGQHQVGLVIKEDIVNKAGKDGIAIECISACLLKVRISIKSNI-VTFVVAYAPTE--EATEG----QKAKCIAALTSTVSLVSAREKVFILTDANARTGKRGEEGGEAESKVLGAYDRYVLNKNSKLLPGFAEENKLALLNTFYVNRLQNRLSYTFQSANRGKWQARLDYILTKQTN 717
            ET+R+G   I   GY + +SG  +G K  +G H VG+ IKE +    G++G  +ECIS  L+KVR+ I     VTFVV YAPTE    T G     K     AL + +  V +R+ + +  DANARTG+R    G  ++K++GAY+R ++N N + L G A +N+L+L NT Y    +  + +TFQS+N+GK + RLD+IL +Q +
Sbjct:  136 ETRREGQGSIAHDGYVIIWSGARAGTKDNRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLIVPMDANARTGRRRH--GCCDAKIMGAYERDIINNNGERLLGLASDNQLSLTNT-YFRTPKGGVQHTFQSSNKGKEKYRLDFILMRQAD 338
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BLAST of mRNA_H-elongata_contig69543.14601.1 vs. uniprot
Match: A0A6H5JBD7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBD7_9PHAE)

HSP 1 Score: 131 bits (330), Expect = 2.300e-31
Identity = 93/241 (38.59%), Postives = 131/241 (54.36%), Query Frame = 1 
Query:    1 LTFGTFNVRTAAVNFVNCIGHIDSLLRPCAARGCHVIGLQETKRDGASEITAPGYRVYFSGDCSGIKWEKGQHQVGLVIKEDIVNKAGKDGIAIECISACLLKVRISIKSN--IVTFVVAYAPTEEATEGQKAKCIAALTSTVSLVSAREKVFILTDANARTGKRGEEGGEAESKVLGAYDRYVLNKNSKLLPGFAEENKLALLNTFYVNRLQNRLSYTFQSANRGKWQARLDYILTKQTN 717
            L   T+NVRT AV  VN  G   S+L   A +   V+G+QET+R G +E  A G+RV+  G  +G     G H VG+ +KE +   +       E I   L+ +R+ +  +   V FV A APTE +T   K      L S V  + ++E V++L DANARTG R + G   + +V+G Y R  LN N  LL  FA EN+LAL NTF+  R +  + +T+   + G    RLDYILT+Q +
Sbjct:   58 LRVATWNVRTLAVIGVNGYGRAYSVLHEAARQDVSVVGMQETRRAGRTEFAAAGFRVFCCGTETG-----GVHGVGIAVKESLCKTST---FTTEFIDERLMAMRLLLAGHRGAVNFVAASAPTEPSTASSKRVFWGKLDSLVRRIPSKECVYVLLDANARTGDRLDGG---DGRVIGMYGRDELNDNGMLLLNFATENRLALTNTFFETR-KGGIWHTYNGVS-GNDCKRLDYILTRQAH 285
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BLAST of mRNA_H-elongata_contig69543.14601.1 vs. uniprot
Match: A0A6H5LI16_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LI16_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 6.530e-23
Identity = 71/182 (39.01%), Postives = 98/182 (53.85%), Query Frame = 1 
Query:   13 TFNVRTAAVNFVNCIGHIDSLLRPCAARGCHVIGLQETKRDGASEITAPGYRVYFSGDCSGIKWEKGQHQVGLVIKEDIVNKAGKDGIAIECISACLLKVRISIKSN--IVTFVVAYAPTEEATEGQKAKCIAALTSTVSLVSAREKVFILTDANARTGKRGEEGGEAESKVLGAYDRYVLN 552
            T+NVRT AVN  N  G  DS+L   A +G   +GLQE +R G +E  A G+RV+  G   G     G H VG+ ++E +  KA +     E +   L+ +R  +  +   V FV AYAPT+ AT   K      L S V  + A+E++F+L DANA+TG  G + GE E   +G Y R  LN
Sbjct:   60 TYNVRTLAVNGANGYGRADSVLHEAAKQGISFVGLQEVRRPGRTEFAASGFRVFTCGTDKG-----GTHGVGIAVQEALC-KASQ--YTTEYVDKRLMAMRFEMTGHRGAVNFVAAYAPTDVATADSKRMFWEKLDSLVRRIPAKERLFVLMDANAQTG--GGKAGENEG-TMGEYGRNELN 230
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BLAST of mRNA_H-elongata_contig69543.14601.1 vs. uniprot
Match: A0A1S4ERN9_DIACI (craniofacial development protein 2-like n=1 Tax=Diaphorina citri TaxID=121845 RepID=A0A1S4ERN9_DIACI)

HSP 1 Score: 53.1 bits (126), Expect = 7.410e-5
Identity = 49/181 (27.07%), Postives = 82/181 (45.30%), Query Frame = 1 
Query:   10 GTFNVRTAAVNFVNCIGHIDSLLRPCAARGCHVIGLQETKRDGASEITAPG-YRVYFSGDCSGIKWEKGQHQVGLVIKEDIVNKAGKDGIAIECISACLLKVRISIKSNIVTFVVAYAPTEEATEGQKAKCIAALTSTVSLVSAREK-VFILTDANARTGKR------GEEGGEAESKVLG 528
            GT+N+++         G    L+         ++GL E K+ G  EIT    YR+ +SG     + ++G   VGLV  E+I  K     +  E +++ ++   + ++  + T +  YAPTE+A+ G K      L   +     R + V ++ D NAR GK+      G+ GGE      G
Sbjct:   53 GTWNIKSIT-------GKEAELVEEMKRYKVKILGLSEVKKKGKGEITIEDRYRLKYSGTAIDARAKEG---VGLVWPEEIERKC----LRWEAVNSRIITADLQLEEKL-TIIQIYAPTEDASTGDKDTFYQELDKEIEKAQDRSRHVIVMGDWNARIGKQPIPNIIGKFGGETTRNTNG 218
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig69543.14601.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JVI3_9PHAE4.400e-3340.78Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JBD7_9PHAE2.300e-3138.59Reverse transcriptase domain-containing protein n=... [more]
A0A6H5LI16_9PHAE6.530e-2339.01Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A1S4ERN9_DIACI7.410e-527.07craniofacial development protein 2-like n=1 Tax=Di... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig69543contigH-elongata_contig69543:699..1415 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size717
Cds size717
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931093.0200632-CDS-H-elongata_contig69543:698..14151622931093.0200632-CDS-H-elongata_contig69543:698..1415Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69543 699..1415 +
1691679694.896595-CDS-H-elongata_contig69543:698..14151691679694.896595-CDS-H-elongata_contig69543:698..1415Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69543 699..1415 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig69543.14601.1prot_H-elongata_contig69543.14601.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig69543 699..1415 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig69543.14601.1

>prot_H-elongata_contig69543.14601.1 ID=prot_H-elongata_contig69543.14601.1|Name=mRNA_H-elongata_contig69543.14601.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=239bp
LTFGTFNVRTAAVNFVNCIGHIDSLLRPCAARGCHVIGLQETKRDGASEI
TAPGYRVYFSGDCSGIKWEKGQHQVGLVIKEDIVNKAGKDGIAIECISAC
LLKVRISIKSNIVTFVVAYAPTEEATEGQKAKCIAALTSTVSLVSAREKV
FILTDANARTGKRGEEGGEAESKVLGAYDRYVLNKNSKLLPGFAEENKLA
LLNTFYVNRLQNRLSYTFQSANRGKWQARLDYILTKQTN
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mRNA from alignment at H-elongata_contig69543:699..1415+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig69543.14601.1 ID=mRNA_H-elongata_contig69543.14601.1|Name=mRNA_H-elongata_contig69543.14601.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=717bp|location=Sequence derived from alignment at H-elongata_contig69543:699..1415+ (Himanthalia elongata Himel1 dioecious)
CTTACCTTCGGCACTTTCAACGTTCGCACAGCAGCTGTTAACTTCGTCAA
TTGCATTGGTCATATCGACTCCCTCCTGAGACCCTGTGCTGCGAGGGGGT
GTCATGTAATTGGACTGCAGGAGACAAAACGAGACGGAGCATCTGAAATA
ACTGCACCTGGATACCGGGTCTACTTCAGTGGTGACTGCAGCGGGATCAA
ATGGGAAAAGGGGCAACATCAGGTCGGACTAGTGATAAAGGAAGACATCG
TTAACAAGGCCGGCAAGGACGGTATCGCAATCGAGTGCATCAGCGCATGT
CTCCTGAAGGTCCGAATATCCATTAAATCAAATATCGTTACGTTTGTGGT
AGCCTACGCTCCGACCGAGGAAGCGACGGAGGGGCAGAAGGCGAAGTGCA
TCGCAGCCCTAACCAGCACCGTATCATTAGTATCCGCTCGGGAAAAAGTC
TTCATTTTGACCGACGCGAATGCCAGGACAGGGAAAAGGGGTGAGGAAGG
CGGGGAAGCAGAAAGCAAGGTATTGGGCGCATATGACCGATACGTGCTCA
ACAAAAACAGCAAACTACTGCCGGGTTTCGCAGAAGAGAACAAGCTCGCT
CTTCTGAACACCTTTTATGTTAACCGCCTCCAAAATAGGTTATCCTACAC
ATTCCAAAGCGCCAACCGCGGCAAATGGCAAGCACGCCTGGACTATATCC
TGACAAAGCAGACGAAC
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Coding sequence (CDS) from alignment at H-elongata_contig69543:699..1415+

>mRNA_H-elongata_contig69543.14601.1 ID=mRNA_H-elongata_contig69543.14601.1|Name=mRNA_H-elongata_contig69543.14601.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1434bp|location=Sequence derived from alignment at H-elongata_contig69543:699..1415+ (Himanthalia elongata Himel1 dioecious)
CTTACCTTCGGCACTTTCAACGTTCGCACAGCAGCTGTTAACTTCGTCAA
TTGCATTGGTCATATCGACTCCCTCCTGAGACCCTGTGCTGCGAGGGGGT
GTCATGTAATTGGACTGCAGGAGACAAAACGAGACGGAGCATCTGAAATA
ACTGCACCTGGATACCGGGTCTACTTCAGTGGTGACTGCAGCGGGATCAA
ATGGGAAAAGGGGCAACATCAGGTCGGACTAGTGATAAAGGAAGACATCG
TTAACAAGGCCGGCAAGGACGGTATCGCAATCGAGTGCATCAGCGCATGT
CTCCTGAAGGTCCGAATATCCATTAAATCAAATATCGTTACGTTTGTGGT
AGCCTACGCTCCGACCGAGGAAGCGACGGAGGGGCAGAAGGCGAAGTGCA
TCGCAGCCCTAACCAGCACCGTATCATTAGTATCCGCTCGGGAAAAAGTC
TTCATTTTGACCGACGCGAATGCCAGGACAGGGAAAAGGGGTGAGGAAGG
CGGGGAAGCAGAAAGCAAGGTATTGGGCGCATATGACCGATACGTGCTCA
ACAAAAACAGCAAACTACTGCCGGGTTTCGCAGAAGAGAACAAGCTCGCT
CTTCTGAACACCTTTTATGTTAACCGCCTCCAAAATAGGTTATCCTACAC
ATTCCAAAGCGCCAACCGCGGCAAATGGCAAGCACGCCTGGACTATATCC
TGACAAAGCAGACGAACCTTACCTTCGGCACTTTCAACGTTCGCACAGCA
GCTGTTAACTTCGTCAATTGCATTGGTCATATCGACTCCCTCCTGAGACC
CTGTGCTGCGAGGGGGTGTCATGTAATTGGACTGCAGGAGACAAAACGAG
ACGGAGCATCTGAAATAACTGCACCTGGATACCGGGTCTACTTCAGTGGT
GACTGCAGCGGGATCAAATGGGAAAAGGGGCAACATCAGGTCGGACTAGT
GATAAAGGAAGACATCGTTAACAAGGCCGGCAAGGACGGTATCGCAATCG
AGTGCATCAGCGCATGTCTCCTGAAGGTCCGAATATCCATTAAATCAAAT
ATCGTTACGTTTGTGGTAGCCTACGCTCCGACCGAGGAAGCGACGGAGGG
GCAGAAGGCGAAGTGCATCGCAGCCCTAACCAGCACCGTATCATTAGTAT
CCGCTCGGGAAAAAGTCTTCATTTTGACCGACGCGAATGCCAGGACAGGG
AAAAGGGGTGAGGAAGGCGGGGAAGCAGAAAGCAAGGTATTGGGCGCATA
TGACCGATACGTGCTCAACAAAAACAGCAAACTACTGCCGGGTTTCGCAG
AAGAGAACAAGCTCGCTCTTCTGAACACCTTTTATGTTAACCGCCTCCAA
AATAGGTTATCCTACACATTCCAAAGCGCCAACCGCGGCAAATGGCAAGC
ACGCCTGGACTATATCCTGACAAAGCAGACGAAC
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