prot_H-elongata_contig69543.14601.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig69543.14601.1
Unique Nameprot_H-elongata_contig69543.14601.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length239
Homology
BLAST of mRNA_H-elongata_contig69543.14601.1 vs. uniprot
Match: A0A6H5JVI3_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVI3_9PHAE)

HSP 1 Score: 136 bits (343), Expect = 4.400e-33
Identity = 84/206 (40.78%), Postives = 124/206 (60.19%), Query Frame = 0
Query:   41 ETKRDGASEITAPGYRVYFSGDCSGIKWEKGQHQVGLVIKEDIVNKAGKDGIAIECISACLLKVRISIKSNI-VTFVVAYAPTE--EATEG----QKAKCIAALTSTVSLVSAREKVFILTDANARTGKRGEEGGEAESKVLGAYDRYVLNKNSKLLPGFAEENKLALLNTFYVNRLQNRLSYTFQSANRGKWQARLDYILTKQTN 239
            ET+R+G   I   GY + +SG  +G K  +G H VG+ IKE +    G++G  +ECIS  L+KVR+ I     VTFVV YAPTE    T G     K     AL + +  V +R+ + +  DANARTG+R    G  ++K++GAY+R ++N N + L G A +N+L+L NT Y    +  + +TFQS+N+GK + RLD+IL +Q +
Sbjct:  136 ETRREGQGSIAHDGYVIIWSGARAGTKDNRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLIVPMDANARTGRRRH--GCCDAKIMGAYERDIINNNGERLLGLASDNQLSLTNT-YFRTPKGGVQHTFQSSNKGKEKYRLDFILMRQAD 338          
BLAST of mRNA_H-elongata_contig69543.14601.1 vs. uniprot
Match: A0A6H5JBD7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBD7_9PHAE)

HSP 1 Score: 131 bits (330), Expect = 2.300e-31
Identity = 93/241 (38.59%), Postives = 131/241 (54.36%), Query Frame = 0
Query:    1 LTFGTFNVRTAAVNFVNCIGHIDSLLRPCAARGCHVIGLQETKRDGASEITAPGYRVYFSGDCSGIKWEKGQHQVGLVIKEDIVNKAGKDGIAIECISACLLKVRISIKSN--IVTFVVAYAPTEEATEGQKAKCIAALTSTVSLVSAREKVFILTDANARTGKRGEEGGEAESKVLGAYDRYVLNKNSKLLPGFAEENKLALLNTFYVNRLQNRLSYTFQSANRGKWQARLDYILTKQTN 239
            L   T+NVRT AV  VN  G   S+L   A +   V+G+QET+R G +E  A G+RV+  G  +G     G H VG+ +KE +   +       E I   L+ +R+ +  +   V FV A APTE +T   K      L S V  + ++E V++L DANARTG R + G   + +V+G Y R  LN N  LL  FA EN+LAL NTF+  R +  + +T+   + G    RLDYILT+Q +
Sbjct:   58 LRVATWNVRTLAVIGVNGYGRAYSVLHEAARQDVSVVGMQETRRAGRTEFAAAGFRVFCCGTETG-----GVHGVGIAVKESLCKTST---FTTEFIDERLMAMRLLLAGHRGAVNFVAASAPTEPSTASSKRVFWGKLDSLVRRIPSKECVYVLLDANARTGDRLDGG---DGRVIGMYGRDELNDNGMLLLNFATENRLALTNTFFETR-KGGIWHTYNGVS-GNDCKRLDYILTRQAH 285          
BLAST of mRNA_H-elongata_contig69543.14601.1 vs. uniprot
Match: A0A6H5LI16_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LI16_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 6.530e-23
Identity = 71/182 (39.01%), Postives = 98/182 (53.85%), Query Frame = 0
Query:    5 TFNVRTAAVNFVNCIGHIDSLLRPCAARGCHVIGLQETKRDGASEITAPGYRVYFSGDCSGIKWEKGQHQVGLVIKEDIVNKAGKDGIAIECISACLLKVRISIKSN--IVTFVVAYAPTEEATEGQKAKCIAALTSTVSLVSAREKVFILTDANARTGKRGEEGGEAESKVLGAYDRYVLN 184
            T+NVRT AVN  N  G  DS+L   A +G   +GLQE +R G +E  A G+RV+  G   G     G H VG+ ++E +  KA +     E +   L+ +R  +  +   V FV AYAPT+ AT   K      L S V  + A+E++F+L DANA+TG  G + GE E   +G Y R  LN
Sbjct:   60 TYNVRTLAVNGANGYGRADSVLHEAAKQGISFVGLQEVRRPGRTEFAASGFRVFTCGTDKG-----GTHGVGIAVQEALC-KASQ--YTTEYVDKRLMAMRFEMTGHRGAVNFVAAYAPTDVATADSKRMFWEKLDSLVRRIPAKERLFVLMDANAQTG--GGKAGENEG-TMGEYGRNELN 230          
BLAST of mRNA_H-elongata_contig69543.14601.1 vs. uniprot
Match: A0A1S4ERN9_DIACI (craniofacial development protein 2-like n=1 Tax=Diaphorina citri TaxID=121845 RepID=A0A1S4ERN9_DIACI)

HSP 1 Score: 53.1 bits (126), Expect = 7.410e-5
Identity = 49/181 (27.07%), Postives = 82/181 (45.30%), Query Frame = 0
Query:    4 GTFNVRTAAVNFVNCIGHIDSLLRPCAARGCHVIGLQETKRDGASEITAPG-YRVYFSGDCSGIKWEKGQHQVGLVIKEDIVNKAGKDGIAIECISACLLKVRISIKSNIVTFVVAYAPTEEATEGQKAKCIAALTSTVSLVSAREK-VFILTDANARTGKR------GEEGGEAESKVLG 176
            GT+N+++         G    L+         ++GL E K+ G  EIT    YR+ +SG     + ++G   VGLV  E+I  K     +  E +++ ++   + ++  + T +  YAPTE+A+ G K      L   +     R + V ++ D NAR GK+      G+ GGE      G
Sbjct:   53 GTWNIKSIT-------GKEAELVEEMKRYKVKILGLSEVKKKGKGEITIEDRYRLKYSGTAIDARAKEG---VGLVWPEEIERKC----LRWEAVNSRIITADLQLEEKL-TIIQIYAPTEDASTGDKDTFYQELDKEIEKAQDRSRHVIVMGDWNARIGKQPIPNIIGKFGGETTRNTNG 218          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig69543.14601.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JVI3_9PHAE4.400e-3340.78Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JBD7_9PHAE2.300e-3138.59Reverse transcriptase domain-containing protein n=... [more]
A0A6H5LI16_9PHAE6.530e-2339.01Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A1S4ERN9_DIACI7.410e-527.07craniofacial development protein 2-like n=1 Tax=Di... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036691Endonuclease/exonuclease/phosphatase superfamilyGENE3D3.60.10.10coord: 8..239
e-value: 9.0E-19
score: 69.8
IPR036691Endonuclease/exonuclease/phosphatase superfamilySUPERFAMILY56219DNase I-likecoord: 1..237

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig69543contigH-elongata_contig69543:699..1415 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig69543.14601.1mRNA_H-elongata_contig69543.14601.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig69543 699..1415 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig69543.14601.1 ID=prot_H-elongata_contig69543.14601.1|Name=mRNA_H-elongata_contig69543.14601.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=239bp
LTFGTFNVRTAAVNFVNCIGHIDSLLRPCAARGCHVIGLQETKRDGASEI
TAPGYRVYFSGDCSGIKWEKGQHQVGLVIKEDIVNKAGKDGIAIECISAC
LLKVRISIKSNIVTFVVAYAPTEEATEGQKAKCIAALTSTVSLVSAREKV
FILTDANARTGKRGEEGGEAESKVLGAYDRYVLNKNSKLLPGFAEENKLA
LLNTFYVNRLQNRLSYTFQSANRGKWQARLDYILTKQTN
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036691Endo/exonu/phosph_ase_sf