mRNA_H-elongata_contig118862.1460.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig118862.1460.1
Unique NamemRNA_H-elongata_contig118862.1460.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig118862.1460.1 vs. uniprot
Match: D7FP11_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FP11_ECTSI)

HSP 1 Score: 113 bits (282), Expect = 4.600e-28
Identity = 51/69 (73.91%), Postives = 59/69 (85.51%), Query Frame = 1 
Query:    1 PRWMMTAAELTGVVFAWTGIEWYIWDGDYIADTWLRDVSYIVAGLVILIATGTFANLAGTISPMSVLKQ 207
            PRW+ TAAELTGVVFAWTGIEWY+W+GDYI D+ LRD+ YI  GL IL+ TGTF NLAGTISP++ LKQ
Sbjct:  316 PRWVTTAAELTGVVFAWTGIEWYVWEGDYIPDSALRDLGYIAVGLGILVGTGTFFNLAGTISPVAALKQ 384
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BLAST of mRNA_H-elongata_contig118862.1460.1 vs. uniprot
Match: A0A835Z909_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z909_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 9.370e-14
Identity = 31/63 (49.21%), Postives = 41/63 (65.08%), Query Frame = 1 
Query:   10 MMTAAELTGVVFAWTGIEWYIWDGDYIADTWLRDVSYIVAGLVILIATGTFANLAGTISPMSV 198
            ++ A+EL  V   WTG EW+IWDG    +T  RD  Y + G  +L+ TGTF +LAGT+SPM V
Sbjct:   56 LLNASELIAVCLIWTGCEWFIWDGFLFHETCTRDSLYALVGFAVLLCTGTFVSLAGTVSPMGV 118
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig118862.1460.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FP11_ECTSI4.600e-2873.91Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z909_9STRA9.370e-1449.21Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig118862contigH-elongata_contig118862:325..1175 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size207
Cds size141
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig118862.1460.1prot_H-elongata_contig118862.1460.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig118862 387..1171 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929695.4635718-UTR-H-elongata_contig118862:324..3861622929695.4635718-UTR-H-elongata_contig118862:324..386Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig118862 325..386 +
1691679122.118937-UTR-H-elongata_contig118862:324..3861691679122.118937-UTR-H-elongata_contig118862:324..386Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig118862 325..386 +
1622929695.5203178-UTR-H-elongata_contig118862:1171..11751622929695.5203178-UTR-H-elongata_contig118862:1171..1175Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig118862 1172..1175 +
1691679122.1463745-UTR-H-elongata_contig118862:1171..11751691679122.1463745-UTR-H-elongata_contig118862:1171..1175Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig118862 1172..1175 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929695.486766-CDS-H-elongata_contig118862:386..3891622929695.486766-CDS-H-elongata_contig118862:386..389Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig118862 387..389 +
1691679122.1314256-CDS-H-elongata_contig118862:386..3891691679122.1314256-CDS-H-elongata_contig118862:386..389Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig118862 387..389 +
1622929695.5030503-CDS-H-elongata_contig118862:1033..11711622929695.5030503-CDS-H-elongata_contig118862:1033..1171Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig118862 1034..1171 +
1691679122.1389625-CDS-H-elongata_contig118862:1033..11711691679122.1389625-CDS-H-elongata_contig118862:1033..1171Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig118862 1034..1171 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig118862.1460.1

>prot_H-elongata_contig118862.1460.1 ID=prot_H-elongata_contig118862.1460.1|Name=mRNA_H-elongata_contig118862.1460.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=47bp
MVHLGWRLHRGYLAPRCVIHSGRLGNPNRHRHLRQPGGNYQPHVGP*
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mRNA from alignment at H-elongata_contig118862:325..1175+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig118862.1460.1 ID=mRNA_H-elongata_contig118862.1460.1|Name=mRNA_H-elongata_contig118862.1460.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=851bp|location=Sequence derived from alignment at H-elongata_contig118862:325..1175+ (Himanthalia elongata Himel1 dioecious)
CCTCGATGGATGATGACCGCGGCAGAGCTAACGGGGGTGGTTTTCGCGTG
GACGGGCATTGAATGGTGAGCGTGAAGGACGGAGGCTAAAATCCGGGGGC
TAAAATCCACGGATTTTATCAGGTTCAAAGCTTTGACCCTTGATTACTTT
TCCGTGTAAGGGGTTTCCTAGTATACCACCATGGCGTCTATACTACGGGG
GGTGTGATAGTAATTTTCGACCTAAAACCTAAAACGTTTAATCCACGGTG
GGTGTGTCATATGGCATCCAGTATCTATCCTACGTTTTTTTCCTGTTCCT
GTGAGGAGAGATTATTCCCGTTTGTATCTTGAACACCTTCGAAGGCTTTT
CGAGGCTTGGGTTTGTTTCACGTGGCGAGCGACACAAAAACTCTCAGAGT
TTTCCGCCTGTGGCAAAAGGGGAATGAGGGAGGGAACTTGGAGTACTATT
CATATCATCCATCGCCAGGAGGCAGGGATCGCTCGAGGACTTTTACCTTG
AGGGTCGAAAAAACAAGAAGCCGAGGCACATTAAGGGAAATCGAGTGCCA
GAAATACGCAGCAATAGCGAAATCTGCGGGGGGGGATGTTTTTAAATCTT
TCCCCGTGCGCGCGTGATGCTCTTTTTTACGAACTGAGGTCTTGCCGCCC
TTCTATCTCCTCCCCCCCCCTTTCAACTAACTTCATGTAGTCTCAACCCT
ACATAACAGGTACATCTGGGATGGCGACTACATCGCGGATACCTGGCTCC
GAGATGTGTCATACATAGTGGCAGGCTTGGTAATCCTAATCGCCACCGGC
ACCTTCGCCAACCTGGCGGGAACTATCAGCCCCATGTCGGTCCTTAAGCA
G
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Coding sequence (CDS) from alignment at H-elongata_contig118862:325..1175+

>mRNA_H-elongata_contig118862.1460.1 ID=mRNA_H-elongata_contig118862.1460.1|Name=mRNA_H-elongata_contig118862.1460.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=282bp|location=Sequence derived from alignment at H-elongata_contig118862:325..1175+ (Himanthalia elongata Himel1 dioecious)
ATGATGGTACATCTGGGATGGCGACTACATCGCGGATACCTGGCTCCGAG
ATGTGTCATACATAGTGGCAGGCTTGGTAATCCTAATCGCCACCGGCACC
TTCGCCAACCTGGCGGGAACTATCAGCCCCATGTCGGTCCTTAAGTACAT
CTGGGATGGCGACTACATCGCGGATACCTGGCTCCGAGATGTGTCATACA
TAGTGGCAGGCTTGGTAATCCTAATCGCCACCGGCACCTTCGCCAACCTG
GCGGGAACTATCAGCCCCATGTCGGTCCTTAA
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