mRNA_H-elongata_contig69526.14600.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig69526.14600.1
Unique NamemRNA_H-elongata_contig69526.14600.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig69526.14600.1 vs. uniprot
Match: D8LLW6_ECTSI (Response receiver n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLW6_ECTSI)

HSP 1 Score: 99.0 bits (245), Expect = 6.860e-18
Identity = 42/55 (76.36%), Postives = 48/55 (87.27%), Query Frame = 2 
Query:  701 QNKAGQTAGHYAVSYRFFELCEWLFLQGDTGAGADDTIENSYGLGPYDGLEPQAG 865
            QNKAGQ+AGHYAVSY+FFE+ EWLFLQ   G GADDT+ENS+GLGPYDGL+P  G
Sbjct: 2396 QNKAGQSAGHYAVSYQFFEMSEWLFLQDGNGGGADDTLENSFGLGPYDGLQPDGG 2450
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BLAST of mRNA_H-elongata_contig69526.14600.1 vs. uniprot
Match: A0A7S3XN59_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XN59_HETAK)

HSP 1 Score: 78.2 bits (191), Expect = 5.410e-12
Identity = 39/70 (55.71%), Postives = 49/70 (70.00%), Query Frame = 2 
Query:  701 QNKAGQTAGHYAVSYRFFELCEWLFLQGDTGAGADDTIENSYGLGPYDGLEPQAG-QEIQGSE-PSMWDG 904
            QN+ GQTAGHYA++Y+FF+   WLF     G G DDTIEN YGLG YDGL P+ G  E  G+E P++ +G
Sbjct:  289 QNQQGQTAGHYALAYQFFDFSSWLF--DPAGGGGDDTIENRYGLGVYDGLAPEGGGYEEGGAEYPALTEG 356
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BLAST of mRNA_H-elongata_contig69526.14600.1 vs. uniprot
Match: A0A482RTX5_9ARCH (Ankyrin repeat domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RTX5_9ARCH)

HSP 1 Score: 68.2 bits (165), Expect = 2.770e-10
Identity = 30/55 (54.55%), Postives = 37/55 (67.27%), Query Frame = 2 
Query:  701 QNKAGQTAGHYAVSYRFFELCEWLFLQGDTGAGADDTIENSYGLGPYDGLEPQAG 865
            QNK GQTA H+ ++Y+FF+L  WLF       GADDT+EN +GL PYDGL    G
Sbjct:   60 QNKQGQTAAHFCIAYQFFDLSTWLFEN-----GADDTVENKFGLTPYDGLSAAEG 109
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BLAST of mRNA_H-elongata_contig69526.14600.1 vs. uniprot
Match: A0A7S3ZRA3_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZRA3_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 5.220e-10
Identity = 32/50 (64.00%), Postives = 38/50 (76.00%), Query Frame = 2 
Query:  701 QNKAGQTAGHYAVSYRFFELCEWLFLQGDTGAGADDTIENSYGLGPYDGL 850
            QNK GQTAGH+A +Y+F++   WLF     G GADDT+EN YGLGPYDGL
Sbjct: 2177 QNKGGQTAGHFANAYQFYDFLSWLF--DPNGGGADDTLENMYGLGPYDGL 2224
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BLAST of mRNA_H-elongata_contig69526.14600.1 vs. uniprot
Match: A0A7S2GT90_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GT90_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 1.600e-8
Identity = 31/54 (57.41%), Postives = 37/54 (68.52%), Query Frame = 2 
Query:  701 QNKAGQTAGHYAVSYRFFELCEWLFLQGDTGAGADDTIENSYGLGPYDGLEPQA 862
            QNK GQT  H+A +Y FF+   WL L  D G GADD+IEN +GLG YDGL+  A
Sbjct:   93 QNKQGQTPAHFANAYEFFDFLTWL-LAAD-GGGADDSIENRFGLGVYDGLDAMA 144
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BLAST of mRNA_H-elongata_contig69526.14600.1 vs. uniprot
Match: A0A7S2LVQ2_9STRA (Hypothetical protein n=2 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LVQ2_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 2.720e-8
Identity = 29/51 (56.86%), Postives = 37/51 (72.55%), Query Frame = 2 
Query:  701 QNKAGQTAGHYAVSYRFFELCEWLFLQGDTGAGADDTIENSYGLGPYDGLE 853
            QNK GQT GH+AV+Y+F+E   WLF   + G GA+D + N + LGPYDGLE
Sbjct:  398 QNKQGQTPGHFAVAYQFYEFASWLF--DEKGGGANDLLTNVFDLGPYDGLE 446
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BLAST of mRNA_H-elongata_contig69526.14600.1 vs. uniprot
Match: A0A7S2B1B5_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2B1B5_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 8.300e-8
Identity = 30/50 (60.00%), Postives = 37/50 (74.00%), Query Frame = 2 
Query:  701 QNKAGQTAGHYAVSYRFFELCEWLFLQGDTGAGADDTIENSYGLGPYDGL 850
            QN+ GQT+GH+A SY F++L  WLF     GAGADDT+ N +GLG YDGL
Sbjct:  263 QNRQGQTSGHFANSYGFWDLLSWLF--DPEGAGADDTLLNRFGLGVYDGL 310
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BLAST of mRNA_H-elongata_contig69526.14600.1 vs. uniprot
Match: A0A6G0X4X6_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X4X6_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 1.680e-7
Identity = 32/52 (61.54%), Postives = 36/52 (69.23%), Query Frame = 2 
Query:  701 QNKAGQTAGHYAVSYRFFELCEWLFLQGDTGAGADDTIENSYGLGPYDGLEP 856
            QNK GQTAGHYA++Y FF+L  WL L  D G G DD + N YGL  YDGL P
Sbjct: 1830 QNKQGQTAGHYAMAYNFFDLGAWL-LDPDKGGGRDD-LANIYGLSAYDGLNP 1879
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BLAST of mRNA_H-elongata_contig69526.14600.1 vs. uniprot
Match: A0A485LIE9_9STRA (Aste57867_21537 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LIE9_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 6.720e-7
Identity = 31/53 (58.49%), Postives = 37/53 (69.81%), Query Frame = 2 
Query:  701 QNKAGQTAGHYAVSYRFFELCEWLFLQGDTGAGADDTIENSYGLGPYDGLEPQ 859
            QNK GQTAGHYA++Y FF+L  WL L  D G G DD + N +GL  YDGL P+
Sbjct: 1999 QNKQGQTAGHYAMAYSFFDLGAWL-LDPDKGGGRDD-LANMHGLTAYDGLSPE 2049
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BLAST of mRNA_H-elongata_contig69526.14600.1 vs. uniprot
Match: A0A024TK00_9STRA (SAM domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TK00_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 7.680e-7
Identity = 31/52 (59.62%), Postives = 36/52 (69.23%), Query Frame = 2 
Query:  701 QNKAGQTAGHYAVSYRFFELCEWLFLQGDTGAGADDTIENSYGLGPYDGLEP 856
            QNK GQTAGHYA++Y FF+L  WL L  D G G DD + N +GL  YDGL P
Sbjct:  983 QNKQGQTAGHYAMAYSFFDLGAWL-LDPDKGGGRDDLV-NMHGLTAYDGLSP 1032
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig69526.14600.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
D8LLW6_ECTSI6.860e-1876.36Response receiver n=2 Tax=Ectocarpus TaxID=2879 Re... [more]
A0A7S3XN59_HETAK5.410e-1255.71Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A482RTX5_9ARCH2.770e-1054.55Ankyrin repeat domain-containing protein (Fragment... [more]
A0A7S3ZRA3_9STRA5.220e-1064.00Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S2GT90_9STRA1.600e-857.41Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2LVQ2_9STRA2.720e-856.86Hypothetical protein n=2 Tax=Skeletonema marinoi T... [more]
A0A7S2B1B5_9STRA8.300e-860.00Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A6G0X4X6_9STRA1.680e-761.54Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A485LIE9_9STRA6.720e-758.49Aste57867_21537 protein n=1 Tax=Aphanomyces stella... [more]
A0A024TK00_9STRA7.680e-759.62SAM domain-containing protein n=1 Tax=Aphanomyces ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig69526contigH-elongata_contig69526:743..2325 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score99.8
Seed ortholog evalue6.1e-19
Seed eggNOG ortholog2880.D8LLW6
EggNOG free text desc.translation initiation factor activity
EggNOG OGsCOG5022@1,KOG0160@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size1583
Cds size231
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig69526.14600.1prot_H-elongata_contig69526.14600.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig69526 1425..1655 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931092.9263306-UTR-H-elongata_contig69526:742..14241622931092.9263306-UTR-H-elongata_contig69526:742..1424Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig69526 743..1424 +
1691679694.8694642-UTR-H-elongata_contig69526:742..14241691679694.8694642-UTR-H-elongata_contig69526:742..1424Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig69526 743..1424 +
1622931092.9685807-UTR-H-elongata_contig69526:1655..23251622931092.9685807-UTR-H-elongata_contig69526:1655..2325Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig69526 1656..2325 +
1691679694.887852-UTR-H-elongata_contig69526:1655..23251691679694.887852-UTR-H-elongata_contig69526:1655..2325Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig69526 1656..2325 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931092.9486043-CDS-H-elongata_contig69526:1424..16551622931092.9486043-CDS-H-elongata_contig69526:1424..1655Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69526 1425..1655 +
1691679694.879636-CDS-H-elongata_contig69526:1424..16551691679694.879636-CDS-H-elongata_contig69526:1424..1655Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69526 1425..1655 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig69526.14600.1

>prot_H-elongata_contig69526.14600.1 ID=prot_H-elongata_contig69526.14600.1|Name=mRNA_H-elongata_contig69526.14600.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=77bp
MFPELGQNKAGQTAGHYAVSYRFFELCEWLFLQGDTGAGADDTIENSYGL
GPYDGLEPQAGQEIQGSEPSMWDGGG*
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mRNA from alignment at H-elongata_contig69526:743..2325+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig69526.14600.1 ID=mRNA_H-elongata_contig69526.14600.1|Name=mRNA_H-elongata_contig69526.14600.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1583bp|location=Sequence derived from alignment at H-elongata_contig69526:743..2325+ (Himanthalia elongata Himel1 dioecious)
GGCCCTGCCATGCTAGTCATTCTCTAGGCTACTCATATTGGTCCTTCCAA
TAGGAGCTCAAGTGTGTATGTGTGTTTGTGCCGCTGTGTGTAATGAGGGA
TACGACACATAACAATAATAGCCCAGGGATCCATCCCCCTGGATAGTTAA
AATTCGTCCCTCGAGTGTCGGCTGCAGTGCATCCGAAGTGCTGCTAGGTG
AACACTTTTTTATAGCTCCCCTCTGCTCCTCGCCATTTGCCTTAGAGCAT
CCCTTTTGTCGTTGAGACAAACATATACTCGTAATACTATACTAGATATC
TATAATATTGCAATATGCGGTTGAGCGACAGAAACTCGCGACAACTCGCG
ACGCCTCACCTCATAATCTCAATCCTCAGGAACACCTGTCCAGGCGTGTT
ACGTTGATATAAACCACGACTCGCCACTACCAAAGAGCAAGGAATTAATT
TTGCCCCAAGAGAACGATCCCTCTCAAAGCCAGCAGTCTACACAACAAAT
TCATGTCTTGGGAGCGTTCTCACGGCTTCGATTCACCCTCTTCAGCCCTT
CAACTCATATCCCCACAGCCCAGCTCCCCTCTTTCGTAGACCGCTTGCTG
CATTCGCTCGTTAGCCTTACTAACCTAACCCCACCCCCTTTCACCCCCCA
CATCATATCCCAACTGCCGTCGTTTTTGCCTGATGTTTCCCGAACTTGGC
CAGAACAAGGCGGGGCAGACCGCGGGGCACTACGCCGTCAGCTACCGGTT
CTTCGAACTCTGCGAGTGGCTGTTCCTGCAAGGCGACACGGGCGCCGGAG
CGGACGACACTATCGAGAATTCTTACGGCCTGGGCCCTTACGACGGGCTG
GAGCCTCAGGCCGGTCAAGAAATCCAGGGTAGCGAGCCGTCGATGTGGGA
CGGGGGGGGATGAGGACGTGTACTTATCGTTCCTTCTTGGCGCTCGGCGT
ACCTCTACGGCCCCTCTTGCCGATGTCCTCTTGTGTCGGCATAGCAGACC
CTCTGCGGTCGAATGGGCATGAATATAATTTCCCCTGCGCTACAGCGAGA
GAGAGATAGATAGAGAAACCGGATCGTTTTTTTCTGGAAGTCTCGCAGTT
TCGTTGTGTTTGATTTTGTGAAGGGGGTTTGGCGGACGACGATGTTTGAG
AGTCGGACGTGGGAGACGCGGCTTGTTGCAGGAAACCTTTCCTGGCGCGT
GATCTGCAGCAAACCCCAGAATAGTCAGCGTTCTCCGCGCCCTCCTTTTT
TTCCGGTCTCATCCATTTCTGCGGTTGGTGGATATCCGTAATCCAGAGAA
CCGAACCGCGCGTGCGCAACCTCACGTCGACATCGTCCAACACCGTCCGA
CCGCAGCGCCGAGCGAGCTGAGAAAGACTGGCTGTACGAGAAAGAGAAGA
CTGTCCCCCGGCGTATCCCCAATAATATTCACACGTATGATCTAGGATTT
TGCTTTTTTTATCGGACACGCTGTACAACGGCAGGCATCACAATCTATCA
AGATCCTCTCCCATCCCCCCCGAGATAATACGTTCGCAAAGAACATCTAT
TTTTTATATTTTCATCGTAATGCAACTCAAAAT
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Coding sequence (CDS) from alignment at H-elongata_contig69526:743..2325+

>mRNA_H-elongata_contig69526.14600.1 ID=mRNA_H-elongata_contig69526.14600.1|Name=mRNA_H-elongata_contig69526.14600.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=462bp|location=Sequence derived from alignment at H-elongata_contig69526:743..2325+ (Himanthalia elongata Himel1 dioecious)
ATGTTTCCCGAACTTGGCCAGAACAAGGCGGGGCAGACCGCGGGGCACTA
CGCCGTCAGCTACCGGTTCTTCGAACTCTGCGAGTGGCTGTTCCTGCAAG
GCGACACGGGCGCCGGAGCGGACGACACTATCGAGAATTCTTACGGCCTG
GGCCCTTACGACGGGCTGGAGCCTCAGGCCGGTCAAGAAATCCAGGGTAG
CGAGCCGTCGATGTGGGACGGGGGGGGATGAATGTTTCCCGAACTTGGCC
AGAACAAGGCGGGGCAGACCGCGGGGCACTACGCCGTCAGCTACCGGTTC
TTCGAACTCTGCGAGTGGCTGTTCCTGCAAGGCGACACGGGCGCCGGAGC
GGACGACACTATCGAGAATTCTTACGGCCTGGGCCCTTACGACGGGCTGG
AGCCTCAGGCCGGTCAAGAAATCCAGGGTAGCGAGCCGTCGATGTGGGAC
GGGGGGGGATGA
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