mRNA_H-elongata_contig69490.14599.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig69490.14599.1
Unique NamemRNA_H-elongata_contig69490.14599.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig69490.14599.1 vs. uniprot
Match: D8LEC2_ECTSI (Putative NIN-like transcription factor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEC2_ECTSI)

HSP 1 Score: 185 bits (470), Expect = 1.980e-53
Identity = 100/122 (81.97%), Postives = 109/122 (89.34%), Query Frame = 1 
Query:    7 PPRLSIPDEPPKVPRRPPSKGNKRETLADIAKRIPIQLMRLYFNYPLRSAAEAMHISVTTLKRLCRRHGVKRWPHRQISGINRALNDLEAQHQGA-GDDIDRGAVADQLRQLHRRREVIIEV 369
            PPRL+IP EPPKVPRR PSKGNKRETLADIAKRIP+ LMR YFNYPLR+AAEAM ISVTTLKRLCRRHGVKRWPHRQI GINR LNDLE QH  A GD++D  +VADQLRQL+RRR+VIIE+
Sbjct:   73 PPRLAIPHEPPKVPRRTPSKGNKRETLADIAKRIPVGLMRHYFNYPLRAAAEAMDISVTTLKRLCRRHGVKRWPHRQICGINRTLNDLETQHDTAKGDEVD--SVADQLRQLYRRRDVIIEL 192
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BLAST of mRNA_H-elongata_contig69490.14599.1 vs. uniprot
Match: A0A6H5K716_9PHAE (RWP-RK domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K716_9PHAE)

HSP 1 Score: 184 bits (468), Expect = 3.520e-53
Identity = 98/120 (81.67%), Postives = 108/120 (90.00%), Query Frame = 1 
Query:   13 RLSIPDEPPKVPRRPPSKGNKRETLADIAKRIPIQLMRLYFNYPLRSAAEAMHISVTTLKRLCRRHGVKRWPHRQISGINRALNDLEAQHQGA-GDDIDRGAVADQLRQLHRRREVIIEV 369
            RL+IP EPPKVPRR PSKGNKRETLADIAKRIP++LMR YFNYPLR+AAEAM ISVTTLKRLCRRHGVKRWPHRQI GINR LNDLE QH  A GD++D  +VA+QLRQLHRRR+VIIE+
Sbjct:   87 RLTIPHEPPKVPRRTPSKGNKRETLADIAKRIPVELMRHYFNYPLRAAAEAMDISVTTLKRLCRRHGVKRWPHRQICGINRTLNDLETQHDTAKGDEVD--SVAEQLRQLHRRRDVIIEL 204
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BLAST of mRNA_H-elongata_contig69490.14599.1 vs. uniprot
Match: D7FN15_ECTSI (Putative NIN-like transcription factor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN15_ECTSI)

HSP 1 Score: 168 bits (425), Expect = 6.830e-50
Identity = 90/119 (75.63%), Postives = 100/119 (84.03%), Query Frame = 1 
Query:   13 RLSIPDEPPKVPRRPPSK-GNKRETLADIAKRIPIQLMRLYFNYPLRSAAEAMHISVTTLKRLCRRHGVKRWPHRQISGINRALNDLEAQHQGAGDDIDRGAVADQLRQLHRRREVIIE 366
            RL IPDEPP +P R  SK G+KRE LADIAKRIP++LMR YFNYPLR +AEAMHISVTTLKRLCRRHGVKRWPHRQISG+NR L DLEAQH  A  + +  AV ++LRQLHRRREVIIE
Sbjct:   36 RLRIPDEPPTLPPRDVSKAGSKREVLADIAKRIPVELMREYFNYPLRVSAEAMHISVTTLKRLCRRHGVKRWPHRQISGLNRTLGDLEAQHDAARGEEEIAAVEEELRQLHRRREVIIE 154
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BLAST of mRNA_H-elongata_contig69490.14599.1 vs. uniprot
Match: A0A6H5KFL8_9PHAE (RWP-RK domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFL8_9PHAE)

HSP 1 Score: 169 bits (429), Expect = 1.000e-46
Identity = 91/119 (76.47%), Postives = 101/119 (84.87%), Query Frame = 1 
Query:   13 RLSIPDEPPKVPRRPPSK-GNKRETLADIAKRIPIQLMRLYFNYPLRSAAEAMHISVTTLKRLCRRHGVKRWPHRQISGINRALNDLEAQHQGAGDDIDRGAVADQLRQLHRRREVIIE 366
            RL IPDEPP +P R  SK G+KRE LADIAKRIP++LMR YFNYPLR +AEAMHISVTTLKRLCRRHGVKRWPHRQISG+NRAL DLEAQH  A  + +  AV ++LRQLHRRREVIIE
Sbjct:   37 RLRIPDEPPTLPPRDVSKAGSKREVLADIAKRIPVELMREYFNYPLRVSAEAMHISVTTLKRLCRRHGVKRWPHRQISGLNRALGDLEAQHDAARGEEEIAAVEEELRQLHRRREVIIE 155
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BLAST of mRNA_H-elongata_contig69490.14599.1 vs. uniprot
Match: A0A6H5JLN8_9PHAE (RWP-RK domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLN8_9PHAE)

HSP 1 Score: 155 bits (391), Expect = 3.040e-41
Identity = 85/123 (69.11%), Postives = 98/123 (79.67%), Query Frame = 1 
Query:   13 RLSIPDEPPKVPRRPPSKGNKRETLADIAKRIPIQLMRLYFNYPLRSAAEAMHISVTTLKRLCRRHGVKRWPHRQISGINRALNDLEAQHQGAGD-----DIDRGAVADQLRQLHRRREVIIE 366
            RL IP+ PP VPRRPPSKGNKRETL DIA RIP+ +MR YFNYPLR+AAEAM+ISVTTLKRLCRRHGVKRWPHRQISGINRA+  LE Q   AG       I    V++Q+++L RRR+V+IE
Sbjct:  990 RLFIPETPPVVPRRPPSKGNKRETLGDIALRIPVTVMRPYFNYPLRTAAEAMNISVTTLKRLCRRHGVKRWPHRQISGINRAMAHLEFQQDQAGRRNSEITIRNNQVSEQMQELLRRRQVMIE 1112
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BLAST of mRNA_H-elongata_contig69490.14599.1 vs. uniprot
Match: D8LNV2_ECTSI (Putative NIN-like transcription factor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNV2_ECTSI)

HSP 1 Score: 146 bits (369), Expect = 2.710e-38
Identity = 75/94 (79.79%), Postives = 81/94 (86.17%), Query Frame = 1 
Query:   13 RLSIPDEPPKVPRRPPSKGNKRETLADIAKRIPIQLMRLYFNYPLRSAAEAMHISVTTLKRLCRRHGVKRWPHRQISGINRALNDLEAQHQGAG 294
            RL IP+ PP VPRRPPSKGNKRETL DIA RIP+ +MR YFNYPLR+AAEAM+ISVTTLKRLCRRHGVKRWPHRQISGINRA+  LE Q   AG
Sbjct:  764 RLFIPETPPVVPRRPPSKGNKRETLGDIAHRIPVTVMRPYFNYPLRTAAEAMNISVTTLKRLCRRHGVKRWPHRQISGINRAMAHLEFQQDQAG 857
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BLAST of mRNA_H-elongata_contig69490.14599.1 vs. uniprot
Match: A0A6H5L9C1_9PHAE (RWP-RK domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9C1_9PHAE)

HSP 1 Score: 122 bits (305), Expect = 6.300e-30
Identity = 64/118 (54.24%), Postives = 92/118 (77.97%), Query Frame = 1 
Query:   16 LSIPDEPPKVPRRPPSKGNKRETLADIAKRIPIQLMRLYFNYPLRSAAEAMHISVTTLKRLCRRHGVKRWPHRQISGINRALNDLEAQHQGAGDDIDRGAVADQLRQLHRRREVIIEV 369
            L++P  P K+ R+PP KG +RETL DIA+R+P++++  YFN+ LR+AA+AM ISVT+LKRLCRRHGVKRWPHRQ+SG+NR ++ LE + Q   +D D   +A QL +L+ RR+ +I++
Sbjct:   24 LNLPKTPRKLARQPPLKGTRRETLQDIARRVPVEVLLPYFNFSLRTAADAMCISVTSLKRLCRRHGVKRWPHRQLSGLNRTVSHLE-ERQATSNDPD---IARQLARLYCRRDEVIDL 137
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BLAST of mRNA_H-elongata_contig69490.14599.1 vs. uniprot
Match: A0A835Z7T4_9STRA (RWP-RK domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7T4_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 1.260e-19
Identity = 41/99 (41.41%), Postives = 69/99 (69.70%), Query Frame = 1 
Query:   70 NKRETLADIAKRIPIQLMRLYFNYPLRSAAEAMHISVTTLKRLCRRHGVKRWPHRQISGINRALNDLEAQHQGAGDDIDRGAVADQLRQLHRRREVIIE 366
            +KR+T  ++AKR+P+ ++  +++ PL  AA  + +S+T LK+LCR++G+KRWPHRQ+S +N++L  LE +  GA DD    A+  +   L  +RE+II+
Sbjct:    1 SKRQTSEEVAKRLPVSVLEEFYHVPLNIAARELSVSLTMLKKLCRQYGIKRWPHRQVSSLNKSLGKLEEKILGASDDKAAAALRAKAGPLRTKRELIIK 99
[Close]
BLAST of mRNA_H-elongata_contig69490.14599.1 vs. uniprot
Match: A0A6H5KE17_9PHAE (RWP-RK domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE17_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 1.460e-14
Identity = 39/99 (39.39%), Postives = 69/99 (69.70%), Query Frame = 1 
Query:   73 KRETLADIAKRIPIQLMRLYFNYPLRSAAEAMHISVTTLKRLCRRHGVKRWPHRQISGINRALNDLEAQHQGAGDD-IDRGAVADQLRQLHRRREVIIE 366
            KR+T  D+A R+P++++  +++ PL  AA+ +++S+T LK+LCR +GVKRWPHRQ+S +++  + LE + +   D   D  ++  +L Q  +RR+VII+
Sbjct:  464 KRQTSEDVAARLPLEVLECFYHVPLNVAAQQLNVSLTMLKKLCRAYGVKRWPHRQVSSLDKTTSKLEDKIKARRDGGKDAPSLVRKLTQARKRRKVIIK 562
[Close]
BLAST of mRNA_H-elongata_contig69490.14599.1 vs. uniprot
Match: D7FS12_ECTSI (Putative NIN-like transcription factor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS12_ECTSI)

HSP 1 Score: 78.2 bits (191), Expect = 2.640e-14
Identity = 39/99 (39.39%), Postives = 69/99 (69.70%), Query Frame = 1 
Query:   73 KRETLADIAKRIPIQLMRLYFNYPLRSAAEAMHISVTTLKRLCRRHGVKRWPHRQISGINRALNDLEAQHQGAGDD-IDRGAVADQLRQLHRRREVIIE 366
            KR+T  D+A R+P++++  +++ PL  AA+ +++S+T LK+LCR +GVKRWPHRQ+S +++  + LE + +   D   D  ++  +L Q  +RR+VII+
Sbjct:  464 KRQTSEDVAARLPLEVLECFYHVPLNVAAQQLNVSLTMLKKLCRAYGVKRWPHRQVSSLDKTTSKLEDKIKTRRDGGKDAPSLVRKLTQARKRRKVIIK 562
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig69490.14599.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEC2_ECTSI1.980e-5381.97Putative NIN-like transcription factor n=1 Tax=Ect... [more]
A0A6H5K716_9PHAE3.520e-5381.67RWP-RK domain-containing protein n=1 Tax=Ectocarpu... [more]
D7FN15_ECTSI6.830e-5075.63Putative NIN-like transcription factor n=1 Tax=Ect... [more]
A0A6H5KFL8_9PHAE1.000e-4676.47RWP-RK domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5JLN8_9PHAE3.040e-4169.11RWP-RK domain-containing protein n=1 Tax=Ectocarpu... [more]
D8LNV2_ECTSI2.710e-3879.79Putative NIN-like transcription factor n=1 Tax=Ect... [more]
A0A6H5L9C1_9PHAE6.300e-3054.24RWP-RK domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A835Z7T4_9STRA1.260e-1941.41RWP-RK domain-containing protein (Fragment) n=1 Ta... [more]
A0A6H5KE17_9PHAE1.460e-1439.39RWP-RK domain-containing protein n=1 Tax=Ectocarpu... [more]
D7FS12_ECTSI2.640e-1439.39Putative NIN-like transcription factor n=1 Tax=Ect... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig69490contigH-elongata_contig69490:458..2460 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score72.4
Seed ortholog evalue1.7e-10
Seed eggNOG ortholog2880.D8LTZ5
EggNOG free text desc.RWP-RK domain
EggNOG OGs2E5A6@1,2SC46@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size381
Cds size381
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931092.8616433-CDS-H-elongata_contig69490:457..6191622931092.8616433-CDS-H-elongata_contig69490:457..619Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69490 458..619 +
1691679694.8444433-CDS-H-elongata_contig69490:457..6191691679694.8444433-CDS-H-elongata_contig69490:457..619Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69490 458..619 +
1622931092.879333-CDS-H-elongata_contig69490:2241..24601622931092.879333-CDS-H-elongata_contig69490:2241..2460Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69490 2242..2460 +
1691679694.856663-CDS-H-elongata_contig69490:2241..24601691679694.856663-CDS-H-elongata_contig69490:2241..2460Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69490 2242..2460 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig69490.14599.1prot_H-elongata_contig69490.14599.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig69490 458..2460 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig69490.14599.1

>prot_H-elongata_contig69490.14599.1 ID=prot_H-elongata_contig69490.14599.1|Name=mRNA_H-elongata_contig69490.14599.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=127bp
PPPPRLSIPDEPPKVPRRPPSKGNKRETLADIAKRIPIQLMRLYFNYPLR
SAAEAMHISVTTLKRLCRRHGVKRWPHRQISGINRALNDLEAQHQGAGDD
IDRGAVADQLRQLHRRREVIIEVRRS*
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mRNA from alignment at H-elongata_contig69490:458..2460+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig69490.14599.1 ID=mRNA_H-elongata_contig69490.14599.1|Name=mRNA_H-elongata_contig69490.14599.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2003bp|location=Sequence derived from alignment at H-elongata_contig69490:458..2460+ (Himanthalia elongata Himel1 dioecious)
CCGCCGCCGCCTCGCCTCTCGATCCCTGATGAGCCTCCTAAGGTTCCGCG
TCGGCCGCCCAGCAAAGGAAACAAAAGAGAGACTCTCGCAGATATCGCCA
AGCGTATTCCCATCCAGCTCATGCGGCTGTATTTCAACTACCCGCTGAGG
TCTGCGGCCGAGGTGAGCGTGGTGTATTTATTGCACATGCAATCCGGCTG
CGCGTCGCGCTGCTGCTGGTCTTCGAGATCCTGTACAGTACCTGTACCTA
TACCTGTACCCGTAATTGTGCACCTGGTGTACCTGTACTGTACCCTAAAA
TTGATGTTTCGTCTGGCTGAACCTACTACAAACGACTTTTTTTTAACGTT
CCTGTTATTTGTGTGATTCCTAGAAGACCCCCCCATCAAGGGCCACCCAC
GCAGAGCGTGATGATCCTTGTATAACGTGCTTGGTATCGGGAGGTGGGGG
ACGAAGCCAAATTCAGGGAAAAAAACGGGGGACCTGTCTGAGAACGCTTG
CCTTGTGACATGATGCGTTGTATCGTCGGCATGTCATGGCATGCCCTGTT
GGCGTAATCTCGTGTCATGCGCTGGAACGTGATTTTGAATATTCCGATTT
TGCTGGAAAATTGACTTACTACTACTGCACTGTACAGTACTGTATAATGA
AAATATACCAGAAATGGTCCTAACGTTAGATTATTCCCAATTTGCACACA
CGCATTCGTGTGCATTACATATTCATACTATCCTATTATGCTTTTTGCCT
TAACCGTCCACGGAATTTCCGACGAGTGTGATCTAGGATATAGCGGGCGC
TCTTTTTTCTTCTTCTTTTATTCCCTGATGTTTATATTGCTCAAATAGTG
TCACGTACGTCCGCGTCCTCAATCGCAATCAATATTGACTCGGTCGCAAT
GGCACAGTGAGTCGGCTTGATTTGGAAGCACTCGCATTATTACCATCAAG
AAGCGGGGCTAGCGGGGGGTAGAACCGATTTATTTGGACTACCATACTAG
TAATATAATAGAGTACGATATCTAGAAACAGTCGCACTAAGAAAGCACCC
AACACAGAGTAAAAAAAAAGAGTACTTTTTGATTAAAAGAAACTTGAACT
CATCCCAACCCTCCGAACATCCACACCTTCTTAGTGCCGTGAGCGGTGTA
GTCCAGGGGACCAACTATCGTCAGGTTCGAATGGTATTGTCTAGTTTCTT
GTTGTGCTCTTCTACCGAGACACAGCCACAGCCAGTCGTGGAGCTAGGCC
AACCTTTTCATTTAAAATAAATATCGTCTGCATTTTCATTTCAAATCGAG
ACAAGAGATGAATTCCGACGCATTCCTTACGTTTTTCGAAGGTGAAAGTA
AATTTGAAGAAGCAAAATGCACCAAGGGCCACCAGCAAACATACGATTGC
GAAACACCATGCATGCGCTGCAACAAGTTCTGTTTCCCTTGGAAGCAATG
TGTCATTTGTTCGTTGTGCGCGAGAGCGAAGAAGGATTTTCAGCCCTCCT
TCGCACATGCGCCAGCGTACTGTACAATGTACAGCATAGAATACAGTATG
AATGATCACACAGCCTTCGATTCCTTCCGACATGCCGGTACAATTTCATT
TGGTTGTACTGTACCCTCAACCCACTGAATCTGAATCTGAATCTGAATTT
ATAATACTACGTTACATATCGGGATTCTTTCTGCCTGTTTCCGCCCCTCG
ATCCCCTTAACCCCCTCAATATTTGACTCGTTAGCCTTGTCTTCCTCTGT
GTTCCTATGCGGTTTTACGCCGCGGGGGGTTCAGGCTATGCACATTTCTG
TGACAACGCTCAAGAGGCTGTGTCGTCGCCACGGAGTGAAGCGTTGGCCT
CATCGGCAAATCAGCGGGATCAACCGAGCGCTTAATGACCTCGAGGCTCA
GCACCAAGGTGCCGGAGACGATATAGACCGTGGGGCCGTGGCCGACCAGC
TCCGTCAGTTGCACAGGCGCCGTGAAGTTATCATCGAGGTAAGGCGCTCT
TAG
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Coding sequence (CDS) from alignment at H-elongata_contig69490:458..2460+

>mRNA_H-elongata_contig69490.14599.1 ID=mRNA_H-elongata_contig69490.14599.1|Name=mRNA_H-elongata_contig69490.14599.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=762bp|location=Sequence derived from alignment at H-elongata_contig69490:458..2460+ (Himanthalia elongata Himel1 dioecious)
CCGCCGCCGCCTCGCCTCTCGATCCCTGATGAGCCTCCTAAGGTTCCGCG
TCGGCCGCCCAGCAAAGGAAACAAAAGAGAGACTCTCGCAGATATCGCCA
AGCGTATTCCCATCCAGCTCATGCGGCTGTATTTCAACTACCCGCTGAGG
TCTGCGGCCGAGCCGCCGCCGCCTCGCCTCTCGATCCCTGATGAGCCTCC
TAAGGTTCCGCGTCGGCCGCCCAGCAAAGGAAACAAAAGAGAGACTCTCG
CAGATATCGCCAAGCGTATTCCCATCCAGCTCATGCGGCTGTATTTCAAC
TACCCGCTGAGGTCTGCGGCCGAGGCTATGCACATTTCTGTGACAACGCT
CAAGAGGCTGTGTCGTCGCCACGGAGTGAAGCGTTGGCCTCATCGGCAAA
TCAGCGGGATCAACCGAGCGCTTAATGACCTCGAGGCTCAGCACCAAGGT
GCCGGAGACGATATAGACCGTGGGGCCGTGGCCGACCAGCTCCGTCAGTT
GCACAGGCGCCGTGAAGTTATCATCGAGGTAAGGCGCTCTTAGGCTATGC
ACATTTCTGTGACAACGCTCAAGAGGCTGTGTCGTCGCCACGGAGTGAAG
CGTTGGCCTCATCGGCAAATCAGCGGGATCAACCGAGCGCTTAATGACCT
CGAGGCTCAGCACCAAGGTGCCGGAGACGATATAGACCGTGGGGCCGTGG
CCGACCAGCTCCGTCAGTTGCACAGGCGCCGTGAAGTTATCATCGAGGTA
AGGCGCTCTTAG
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