mRNA_H-elongata_contig69469.14597.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig69469.14597.1
Unique NamemRNA_H-elongata_contig69469.14597.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig69469.14597.1 vs. uniprot
Match: D7FXQ9_ECTSI (Aspartokinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXQ9_ECTSI)

HSP 1 Score: 109 bits (272), Expect = 1.230e-26
Identity = 54/62 (87.10%), Postives = 56/62 (90.32%), Query Frame = 1 
Query:    1 SMRPAMKVGLPVRIKNSYNPSHPGTVIATERDCGETLVTAITSKRGVELVDIVSTRMLGQYG 186
            SMRP +K GLPVRIKNSYNPSHPGTVIA  RDCGETLVTAIT K+GVELVDIVSTRMLGQ G
Sbjct:  368 SMRPVIKTGLPVRIKNSYNPSHPGTVIAANRDCGETLVTAITFKKGVELVDIVSTRMLGQSG 429
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BLAST of mRNA_H-elongata_contig69469.14597.1 vs. uniprot
Match: A0A6H5JA47_9PHAE (Aspartokinase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA47_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 1.360e-26
Identity = 54/62 (87.10%), Postives = 57/62 (91.94%), Query Frame = 1 
Query:    1 SMRPAMKVGLPVRIKNSYNPSHPGTVIATERDCGETLVTAITSKRGVELVDIVSTRMLGQYG 186
            SMRP +K GLPVRIKNSYNPSHPGTVIA +RDCGETLVTAIT K+GVELVDIVSTRMLGQ G
Sbjct:  391 SMRPVIKTGLPVRIKNSYNPSHPGTVIAAKRDCGETLVTAITFKKGVELVDIVSTRMLGQSG 452
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BLAST of mRNA_H-elongata_contig69469.14597.1 vs. uniprot
Match: A0A835ZI76_9STRA (Aspartokinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZI76_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 7.730e-22
Identity = 45/62 (72.58%), Postives = 51/62 (82.26%), Query Frame = 1 
Query:    1 SMRPAMKVGLPVRIKNSYNPSHPGTVIATERDCGETLVTAITSKRGVELVDIVSTRMLGQYG 186
            +MRPA + G+PVRIKNSYNPSHPGT I   R CGE LVTA+T K GVEL+D+VSTRMLGQ G
Sbjct:  283 AMRPAQRAGIPVRIKNSYNPSHPGTFITGSRVCGEALVTAVTFKEGVELIDVVSTRMLGQVG 344
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BLAST of mRNA_H-elongata_contig69469.14597.1 vs. uniprot
Match: A0A7S0C2F1_9STRA (Aspartokinase n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C2F1_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 4.970e-18
Identity = 44/62 (70.97%), Postives = 50/62 (80.65%), Query Frame = 1 
Query:    1 SMRPAMKVGLPVRIKNSYNPSHPGTVIATERDCGETLVTAITSKRGVELVDIVSTRMLGQYG 186
            +MRPAMK  +PVR+KNSYNPSH GTVI  E D G  LVTAIT KR V+++DIVSTRMLG YG
Sbjct:  238 AMRPAMKKNIPVRVKNSYNPSHEGTVIKKEHD-GTHLVTAITCKRNVKMLDIVSTRMLGAYG 298
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BLAST of mRNA_H-elongata_contig69469.14597.1 vs. uniprot
Match: A0A1X6NKZ0_PORUM (Aspartokinase (Fragment) n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NKZ0_PORUM)

HSP 1 Score: 84.7 bits (208), Expect = 7.540e-18
Identity = 44/63 (69.84%), Postives = 50/63 (79.37%), Query Frame = 1 
Query:    1 SMRPAMKVGLPVRIKNSYNPSHPGTVIATERDC-GETLVTAITSKRGVELVDIVSTRMLGQYG 186
            +M PAM+  +PVR+KNSYNPSHPGTVI  ER    E  VTAI+ KRGV+LVDIVSTRMLG YG
Sbjct:  292 AMMPAMRSNIPVRVKNSYNPSHPGTVIVRERAVHAENPVTAISVKRGVQLVDIVSTRMLGAYG 354
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BLAST of mRNA_H-elongata_contig69469.14597.1 vs. uniprot
Match: A0A4D9D6A5_9STRA (Aspartokinase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D6A5_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 3.390e-17
Identity = 43/62 (69.35%), Postives = 50/62 (80.65%), Query Frame = 1 
Query:    1 SMRPAMKVGLPVRIKNSYNPSHPGTVIATERDCGETLVTAITSKRGVELVDIVSTRMLGQYG 186
            SM PAM+  + VR+KNSYNP HPGTVI  ++D  + LVTAITSKR VEL+DIVST MLGQYG
Sbjct:  260 SMVPAMRYNIQVRVKNSYNPDHPGTVILADKDYTQ-LVTAITSKRNVELLDIVSTWMLGQYG 320
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BLAST of mRNA_H-elongata_contig69469.14597.1 vs. uniprot
Match: W7U6D4_9STRA (Aspartate kinase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U6D4_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 3.800e-17
Identity = 43/62 (69.35%), Postives = 50/62 (80.65%), Query Frame = 1 
Query:    1 SMRPAMKVGLPVRIKNSYNPSHPGTVIATERDCGETLVTAITSKRGVELVDIVSTRMLGQYG 186
            SM PAM+  + VR+KNSYNP HPGTVI  ++D  + LVTAITSKR VEL+DIVST MLGQYG
Sbjct:  381 SMVPAMRYNIQVRVKNSYNPDHPGTVILADKDYTQ-LVTAITSKRNVELLDIVSTWMLGQYG 441
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BLAST of mRNA_H-elongata_contig69469.14597.1 vs. uniprot
Match: A0A7S1XJS5_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XJS5_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 8.920e-17
Identity = 37/48 (77.08%), Postives = 43/48 (89.58%), Query Frame = 1 
Query:   43 KNSYNPSHPGTVIATERDCGETLVTAITSKRGVELVDIVSTRMLGQYG 186
            KNSYNP+HPGTVI+  RD  E+LVTAIT+K+GV +VDIVSTRMLGQYG
Sbjct:    1 KNSYNPTHPGTVISRTRDMSESLVTAITTKKGVRVVDIVSTRMLGQYG 48
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BLAST of mRNA_H-elongata_contig69469.14597.1 vs. uniprot
Match: UPI00092F5FC0 (aspartokinase 2, chloroplastic-like n=1 Tax=Lupinus angustifolius TaxID=3871 RepID=UPI00092F5FC0)

HSP 1 Score: 80.9 bits (198), Expect = 2.470e-16
Identity = 38/62 (61.29%), Postives = 49/62 (79.03%), Query Frame = 1 
Query:    1 SMRPAMKVGLPVRIKNSYNPSHPGTVIATERDCGETLVTAITSKRGVELVDIVSTRMLGQYG 186
            SMRPA +  +PVR+KNSYNP  PGT+I+ ERD  + ++T+I  KR V ++DIVSTRMLGQYG
Sbjct:  353 SMRPARESDIPVRVKNSYNPKAPGTLISRERDMSKAVLTSIVLKRNVTMLDIVSTRMLGQYG 414
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BLAST of mRNA_H-elongata_contig69469.14597.1 vs. uniprot
Match: A0A2K3MNV7_TRIPR (Aspartokinase n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3MNV7_TRIPR)

HSP 1 Score: 80.5 bits (197), Expect = 2.660e-16
Identity = 38/62 (61.29%), Postives = 48/62 (77.42%), Query Frame = 1 
Query:    1 SMRPAMKVGLPVRIKNSYNPSHPGTVIATERDCGETLVTAITSKRGVELVDIVSTRMLGQYG 186
            SMRPA +  +PVR+KNSYNP  PGT+I  ERD  + ++T+I  KR V ++DIVSTRMLGQYG
Sbjct:  186 SMRPARESDIPVRVKNSYNPKAPGTLITKERDMSKAVLTSIVLKRNVTMLDIVSTRMLGQYG 247
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig69469.14597.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FXQ9_ECTSI1.230e-2687.10Aspartokinase n=1 Tax=Ectocarpus siliculosus TaxID... [more]
A0A6H5JA47_9PHAE1.360e-2687.10Aspartokinase n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
A0A835ZI76_9STRA7.730e-2272.58Aspartokinase n=1 Tax=Tribonema minus TaxID=303371... [more]
A0A7S0C2F1_9STRA4.970e-1870.97Aspartokinase n=1 Tax=Proboscia inermis TaxID=4202... [more]
A0A1X6NKZ0_PORUM7.540e-1869.84Aspartokinase (Fragment) n=1 Tax=Porphyra umbilica... [more]
A0A4D9D6A5_9STRA3.390e-1769.35Aspartokinase n=1 Tax=Nannochloropsis salina CCMP1... [more]
W7U6D4_9STRA3.800e-1769.35Aspartate kinase n=1 Tax=Nannochloropsis gaditana ... [more]
A0A7S1XJS5_9STRA8.920e-1777.08Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
UPI00092F5FC02.470e-1661.29aspartokinase 2, chloroplastic-like n=1 Tax=Lupinu... [more]
A0A2K3MNV7_TRIPR2.660e-1661.29Aspartokinase n=1 Tax=Trifolium pratense TaxID=575... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig69469contigH-elongata_contig69469:235..423 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score109.0
Seed ortholog evalue8.1e-22
Seed eggNOG ortholog2880.D7FXQ9
Preferred nameHOM3
KEGG rclassRC00002,RC00043
KEGG koko:K00928
KEGG ReactionR00480
KEGG Pathwayko00260,ko00261,ko00270,ko00300,ko01100,ko01110,ko01120,ko01130,ko01210,ko01230,map00260,map00261,map00270,map00300,map01100,map01110,map01120,map01130,map01210,map01230
KEGG ModuleM00016,M00017,M00018,M00033,M00525,M00526,M00527
GOsGO:0000096,GO:0000097,GO:0003674,GO:0003824,GO:0004072,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006531,GO:0006553,GO:0006555,GO:0006566,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009066,GO:0009067,GO:0009069,GO:0009070,GO:0009085,GO:0009086,GO:0009088,GO:0009089,GO:0009090,GO:0009092,GO:0009987,GO:0016053,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016774,GO:0019202,GO:0019752,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044249,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0046451,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607
EggNOG free text desc.aspartate kinase activity
EggNOG OGsCOG0527@1,KOG0456@2759
EC2.7.2.4
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Exons1
Model size189
Cds size186
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931092.6879802-CDS-H-elongata_contig69469:234..4201622931092.6879802-CDS-H-elongata_contig69469:234..420Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69469 235..420 -
1691679694.7677004-CDS-H-elongata_contig69469:234..4201691679694.7677004-CDS-H-elongata_contig69469:234..420Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69469 235..420 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931092.705257-UTR-H-elongata_contig69469:420..4231622931092.705257-UTR-H-elongata_contig69469:420..423Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig69469 421..423 -
1691679694.781371-UTR-H-elongata_contig69469:420..4231691679694.781371-UTR-H-elongata_contig69469:420..423Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig69469 421..423 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig69469.14597.1prot_H-elongata_contig69469.14597.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig69469 235..420 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig69469.14597.1

>prot_H-elongata_contig69469.14597.1 ID=prot_H-elongata_contig69469.14597.1|Name=mRNA_H-elongata_contig69469.14597.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=62bp
MRPAMKVGLPVRIKNSYNPSHPGTVIATERDCGETLVTAITSKRGVELVD
IVSTRMLGQYG*
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mRNA from alignment at H-elongata_contig69469:235..423-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig69469.14597.1 ID=mRNA_H-elongata_contig69469.14597.1|Name=mRNA_H-elongata_contig69469.14597.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=189bp|location=Sequence derived from alignment at H-elongata_contig69469:235..423- (Himanthalia elongata Himel1 dioecious)
TCGATGAGACCCGCCATGAAGGTCGGCCTTCCTGTGCGCATCAAAAACTC
GTACAACCCTTCCCACCCTGGAACGGTGATCGCGACCGAGAGGGACTGCG
GAGAAACCTTGGTGACGGCCATCACCTCCAAGAGGGGCGTGGAGTTGGTT
GACATCGTTTCCACAAGAATGCTTGGTCAATACGGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig69469:235..423-

>mRNA_H-elongata_contig69469.14597.1 ID=mRNA_H-elongata_contig69469.14597.1|Name=mRNA_H-elongata_contig69469.14597.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=372bp|location=Sequence derived from alignment at H-elongata_contig69469:235..423- (Himanthalia elongata Himel1 dioecious)
ATGAGACCCGCCATGAAGGTCGGCCTTCCTGTGCGCATCAAAAACTCGTA
CAACCCTTCCCACCCTGGAACGGTGATCGCGACCGAGAGGGACTGCGGAG
AAACCTTGGTGACGGCCATCACCTCCAAGAGGGGCGTGGAGTTGGTTGAC
ATCGTTTCCACAAGAATGCTTGGTCAATACGGGTGAATGAGACCCGCCAT
GAAGGTCGGCCTTCCTGTGCGCATCAAAAACTCGTACAACCCTTCCCACC
CTGGAACGGTGATCGCGACCGAGAGGGACTGCGGAGAAACCTTGGTGACG
GCCATCACCTCCAAGAGGGGCGTGGAGTTGGTTGACATCGTTTCCACAAG
AATGCTTGGTCAATACGGGTGA
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