mRNA_H-elongata_contig69458.14596.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig69458.14596.1 vs. uniprot
Match: A0A6H5JZ76_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JZ76_9PHAE) HSP 1 Score: 271 bits (694), Expect = 1.190e-85 Identity = 130/158 (82.28%), Postives = 144/158 (91.14%), Query Frame = 1
Query: 1 CSMCFAQNITLSRDQYGVAYLPGFVGLNNLKSTDFVNVVLHSLAHIPPLRDFFVEPANYKDSKAPLVHAFGEVIRRVWSPSNFKSAVSPHEFIQAVSYASKKRFRPGIQSEAVDFLTWLLNSLHQGLGGTRKVGT-VIFQTFQGLVEVKTLTKKKVRV 471
C +N TLSRDQYGVAYLPGFVGLNNLK TDFVNVVLH+LAH+PPLR+FFVEP NYKDSK+ LVHAFGEV+RR+WSPSNFKSAVSPHEFIQAVSYASKKRFRPG+Q+EA+DFL WLLNSLHQGLGGTRK G+ V+FQTFQGLVEV+TLTKKK +
Sbjct: 182 CIAALDKNTTLSRDQYGVAYLPGFVGLNNLKCTDFVNVVLHALAHVPPLRNFFVEPDNYKDSKSTLVHAFGEVVRRIWSPSNFKSAVSPHEFIQAVSYASKKRFRPGVQAEAIDFLAWLLNSLHQGLGGTRKAGSSVVFQTFQGLVEVETLTKKKATI 339
BLAST of mRNA_H-elongata_contig69458.14596.1 vs. uniprot
Match: A0A835Z9Q1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9Q1_9STRA) HSP 1 Score: 212 bits (539), Expect = 6.170e-64 Identity = 103/150 (68.67%), Postives = 125/150 (83.33%), Query Frame = 1
Query: 19 QNITLSRDQYGVAYLPGFVGLNNLKSTDFVNVVLHSLAHIPPLRDFFVEPANYKDSKAPLVHAFGEVIRRVWSPSNFKSAVSPHEFIQAVSYASKKRFRPGIQSEAVDFLTWLLNSLHQGLGGTRK--VGT-VIFQTFQGLVEVKTLTKK 459
+N TL+RDQYGVAYLPGFVGLNNL STD++NV LH+LAH+ PLRDFF++P NY K+PLV AFGEVIRR+WS NFKSAVSPHEF+QAVS AS KRF G Q+E +DF++WLLNSLH GLGG++K GT +I +TFQGLV V T+T++
Sbjct: 91 RNTTLARDQYGVAYLPGFVGLNNLTSTDYLNVTLHALAHVAPLRDFFLDPTNYAGCKSPLVLAFGEVIRRLWSHDNFKSAVSPHEFLQAVSIASNKRFHVGQQAECIDFMSWLLNSLHVGLGGSKKKKAGTSIIHKTFQGLVHVHTMTRE 240
BLAST of mRNA_H-elongata_contig69458.14596.1 vs. uniprot
Match: A0A7S2V118_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V118_9STRA) HSP 1 Score: 190 bits (482), Expect = 2.960e-57 Identity = 103/200 (51.50%), Postives = 123/200 (61.50%), Query Frame = 1
Query: 19 QNITLSRDQYGVAYLPGFVGLNNLKSTDFVNVVLHSLAHIPPLRDFFVEPANYKDSKAPLVHAFGEVIRRVWSPSNFKSAVSPHEFIQAVSYASKKRFRPGIQSEAVDFLTWLLNSLHQGLGGTRKVG----------------------------------------------------TVIFQTFQGLVEVKTLTKKK 462
QN TL+RD YGV+YLPGFVGLNNLKSTDFVNVVL +LAH+ PLRDFF++P NY S++ LVH FGEV+R++WS NFKS VSPHEF+Q V+ ASKKRFR G Q+E +DFL WLL+SLH GLGG ++ TVI Q FQG+V VKTLT+KK
Sbjct: 109 QNTTLARDVYGVSYLPGFVGLNNLKSTDFVNVVLQALAHVTPLRDFFLQPQNYHLSRSQLVHRFGEVMRKMWSKDNFKSCVSPHEFVQEVTVASKKRFRIGQQAECIDFLAWLLHSLHVGLGGHPRLEQAGVMDVEEXXXXXXXXXXXXXXXXXXXXXXXXXXXLRPEDLLGITPPAEGPTVIQQCFQGVVHVKTLTRKK 308
BLAST of mRNA_H-elongata_contig69458.14596.1 vs. uniprot
Match: X5IAE6_9STRA (Ubiquitin specific peptidase 39 n=1 Tax=Ciliophrys infusionum TaxID=38824 RepID=X5IAE6_9STRA) HSP 1 Score: 196 bits (497), Expect = 1.880e-56 Identity = 92/150 (61.33%), Postives = 117/150 (78.00%), Query Frame = 1
Query: 22 NITLSRDQYGVAYLPGFVGLNNLKSTDFVNVVLHSLAHIPPLRDFFVEPANYKDSKAPLVHAFGEVIRRVWSPSNFKSAVSPHEFIQAVSYASKKRFRPGIQSEAVDFLTWLLNSLHQGLGGTRKVGTVIFQTFQGLVEVKTLTKKKVRV 471
N TL+RD +GV YLPGF+GLNNLK TD+VNVV+H+LAH+ PLRDFF+ NY++SK+ LVH FGE++R++WS N+KS VSPHE +Q V+ ASK+RF G QSE V+FL+WLLNSLH GLGGTRK ++I + FQG V V T +K V
Sbjct: 194 NTTLARDIFGVTYLPGFIGLNNLKKTDYVNVVVHALAHVTPLRDFFLRSQNYENSKSQLVHRFGELMRKIWSKHNYKSCVSPHELVQEVTVASKRRFVIGKQSECVEFLSWLLNSLHFGLGGTRKDKSIIHEVFQGKVRVTTRQRKTAAV 343
BLAST of mRNA_H-elongata_contig69458.14596.1 vs. uniprot
Match: A0A5D6Y3K6_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y3K6_9STRA) HSP 1 Score: 189 bits (481), Expect = 5.980e-55 Identity = 90/153 (58.82%), Postives = 121/153 (79.08%), Query Frame = 1
Query: 19 QNITLSRDQYGVAYLPGFVGLNNLKSTDFVNVVLHSLAHIPPLRDFFVEPANY-KDSKAPLVHAFGEVIRRVWSPSNFKSAVSPHEFIQAVSYASKKRFRPGIQSEAVDFLTWLLNSLHQGLGGTRKVGTVIFQT-FQGLVEVKTLTKKKVRV 471
QN L++D +GV+YLPGF+GLNNLK+TD+VNVV+ +LAHIPPLRDFF++ + S++ LVH FGE++R++WSP NFK+ +SPHEF+Q VS +SKKRF G Q+E+V+FL+WLLN LH+GLGG+ K G+ I T FQG VEV T+ + K V
Sbjct: 126 QNRILAQDAFGVSYLPGFIGLNNLKNTDYVNVVVQALAHIPPLRDFFLQATDVVASSRSQLVHRFGELLRKMWSPHNFKNTISPHEFVQEVSVSSKKRFHVGTQNESVEFLSWLLNELHRGLGGSSKPGSSIVHTCFQGFVEVTTIDEAKAAV 278
BLAST of mRNA_H-elongata_contig69458.14596.1 vs. uniprot
Match: A0A067BSI9_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067BSI9_SAPPC) HSP 1 Score: 187 bits (475), Expect = 3.850e-54 Identity = 87/149 (58.39%), Postives = 118/149 (79.19%), Query Frame = 1
Query: 22 NITLSRDQYGVAYLPGFVGLNNLKSTDFVNVVLHSLAHIPPLRDFFVEPANYK----DSKAPLVHAFGEVIRRVWSPSNFKSAVSPHEFIQAVSYASKKRFRPGIQSEAVDFLTWLLNSLHQGLGGTRKVGT-VIFQTFQGLVEVKTLT 453
N L++D +GV+YLPGF+GLNNLK TD+V+VVLH+LAH+PPLRD+F+EPANY +K+ LV FGE++R++WSP N K+ +SPHE +Q +S ASKKRF G Q +A++FL+W LN LH+G+GGTRK G+ +I FQG V+VKTL+
Sbjct: 127 NRKLAQDSFGVSYLPGFIGLNNLKKTDYVSVVLHALAHVPPLRDYFLEPANYMAAVAKTKSSLVVRFGEMMRKMWSPHNIKNTISPHEIVQEISVASKKRFHIGEQKDALEFLSWFLNELHRGVGGTRKQGSSIIHDVFQGTVQVKTLS 275
BLAST of mRNA_H-elongata_contig69458.14596.1 vs. uniprot
Match: A0A7S3ZYB1_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZYB1_9STRA) HSP 1 Score: 188 bits (477), Expect = 3.960e-54 Identity = 86/145 (59.31%), Postives = 113/145 (77.93%), Query Frame = 1
Query: 28 TLSRDQYGVAYLPGFVGLNNLKSTDFVNVVLHSLAHIPPLRDFFVEPANYKDSKAPLVHAFGEVIRRVWSPSNFKSAVSPHEFIQAVSYASKKRFRPGIQSEAVDFLTWLLNSLHQGLGGTRKVGT-VIFQTFQGLVEVKTLTKK 459
TL+RD +GVAYLPGF GLNNLK TD++NVV+H LAH+ PLRDFF++P NYKD +PLV FG ++R++WS NFKS VSPHE +Q V+ ASK RF+ G ++A DFL WLLN LH+ LGGT++ G+ +I FQG + V+TL++K
Sbjct: 192 TLARDVHGVAYLPGFCGLNNLKKTDYINVVVHQLAHVRPLRDFFLDPRNYKDRPSPLVREFGALLRKIWSRDNFKSVVSPHELVQEVTRASKLRFKIGTSADAADFLGWLLNQLHRDLGGTKRPGSSIIHDVFQGSIRVETLSRK 336
BLAST of mRNA_H-elongata_contig69458.14596.1 vs. uniprot
Match: F0YC17_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YC17_AURAN) HSP 1 Score: 189 bits (479), Expect = 1.510e-52 Identity = 89/145 (61.38%), Postives = 112/145 (77.24%), Query Frame = 1
Query: 28 TLSRDQYGVAYLPGFVGLNNLKSTDFVNVVLHSLAHIPPLRDFFVEPANYKDSKAPLVHAFGEVIRRVWSPSNFKSAVSPHEFIQAVSYASKKRFRPGIQSEAVDFLTWLLNSLHQGLGGTRKVGT-VIFQTFQGLVEVKTLTKK 459
TL+RD +GVAYLPGF GLNNLK TD+VNVV+H+LAH+ PLRDFF+ P NY APLVH FGE++R++WS NFKS +SPHE +Q ++ ASK RF+ G S+A DFL W LN LH+ LGGTRK G+ VI FQG V V+TL+++
Sbjct: 139 TLARDVHGVAYLPGFCGLNNLKKTDYVNVVVHALAHVAPLRDFFLRPENYAHCPAPLVHKFGELLRKLWSRDNFKSVISPHELVQEITVASKLRFQIGETSDAADFLVWFLNELHRSLGGTRKRGSSVIHDAFQGDVRVETLSRR 283
BLAST of mRNA_H-elongata_contig69458.14596.1 vs. uniprot
Match: A0A1V9Z9V5_9STRA (U4/U6.U5 tri-snRNP-associated protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z9V5_9STRA) HSP 1 Score: 182 bits (463), Expect = 2.010e-52 Identity = 85/148 (57.43%), Postives = 114/148 (77.03%), Query Frame = 1
Query: 22 NITLSRDQYGVAYLPGFVGLNNLKSTDFVNVVLHSLAHIPPLRDFFVEPANYKDS----KAPLVHAFGEVIRRVWSPSNFKSAVSPHEFIQAVSYASKKRFRPGIQSEAVDFLTWLLNSLHQGLGGTRKVGT-VIFQTFQGLVEVKTL 450
N L++D +GV+YLPGFVGLNNLK TD+++VVLH+LAH+PPLRD+F+EP NY + K+ LV FGE+IR++WSP N K+ +SPHE +Q +S ASKKRFR G Q + ++FL+W LN LH+G+GGT+ G+ +I Q FQG V V TL
Sbjct: 121 NKKLAQDSFGVSYLPGFVGLNNLKKTDYISVVLHALAHVPPLRDYFLEPVNYMPAVAKTKSVLVVRFGEMIRKMWSPHNIKNTISPHEIVQEISVASKKRFRIGEQKDGLEFLSWFLNELHRGIGGTKTPGSSIIHQVFQGTVRVNTL 268
BLAST of mRNA_H-elongata_contig69458.14596.1 vs. uniprot
Match: A0A8K1FFF5_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FFF5_PYTOL) HSP 1 Score: 182 bits (462), Expect = 3.940e-52 Identity = 86/150 (57.33%), Postives = 119/150 (79.33%), Query Frame = 1
Query: 19 QNITLSRDQYGVAYLPGFVGLNNLKSTDFVNVVLHSLAHIPPLRDFFVEPAN-YKDSKAPLVHAFGEVIRRVWSPSNFKSAVSPHEFIQAVSYASKKRFRPGIQSEAVDFLTWLLNSLHQGLGGTRKVGT-VIFQTFQGLVEVKTLTKKK 462
+N L++D +GV+YLPGF+GLNNLK TD++NVV+ +LAH+PPLRDFF+ +N SK+ LV FGE++R++WSP NFK+ +SPHEF+Q VS +S KRF G Q+E+V+FL+WLLN LH+GLGG+ K G+ +I + FQGL+EVKT + K
Sbjct: 127 ENRLLAQDAFGVSYLPGFIGLNNLKHTDYINVVVQALAHVPPLRDFFLLSSNTVGKSKSSLVLRFGELLRKMWSPHNFKNTISPHEFVQEVSVSSNKRFHVGQQNESVEFLSWLLNELHRGLGGSHKRGSSIIHKCFQGLIEVKTTDETK 276 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig69458.14596.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig69458.14596.1 >prot_H-elongata_contig69458.14596.1 ID=prot_H-elongata_contig69458.14596.1|Name=mRNA_H-elongata_contig69458.14596.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=157bp MCFAQNITLSRDQYGVAYLPGFVGLNNLKSTDFVNVVLHSLAHIPPLRDFback to top mRNA from alignment at H-elongata_contig69458:207..3016- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig69458.14596.1 ID=mRNA_H-elongata_contig69458.14596.1|Name=mRNA_H-elongata_contig69458.14596.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2810bp|location=Sequence derived from alignment at H-elongata_contig69458:207..3016- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig69458:207..3016- >mRNA_H-elongata_contig69458.14596.1 ID=mRNA_H-elongata_contig69458.14596.1|Name=mRNA_H-elongata_contig69458.14596.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=942bp|location=Sequence derived from alignment at H-elongata_contig69458:207..3016- (Himanthalia elongata Himel1 dioecious)back to top |