mRNA_H-elongata_contig69442.14594.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig69442.14594.1 vs. uniprot
Match: D8LLE0_ECTSI (JmjC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLE0_ECTSI) HSP 1 Score: 330 bits (845), Expect = 3.470e-110 Identity = 150/203 (73.89%), Postives = 176/203 (86.70%), Query Frame = 1
Query: 1 VVKWRDVGQEGVMAFMGPLLAENRPLLMSGYWTHQVLHKDAVSKWKTFEGIKSVFLDQGLDQLRVDVSCTKKGDTFRGDHASRQYVNLRLMDMLNLAEASEMGKPHWATAEDVGLDYYLCQCPVFSREPGKPEVLSAIAREFRTPSCVLEEDLLQVNLWLGAMETTTNMHFDANHNLLFVLKGHKSVVLMPPSMTGAVGAMPV 609
VV+WRDVG EGVM++M P +A+N PLLMSG+W HQVL+KDA +W TF GIKSV +GLDQLRVD+SCTKKGD+FRGD ASRQ VNL+LMDM+ +AEA E+G+PHWA++++VGLDYYLCQCPV SRE GKPEVLSAIA EFRTPSCV +EDLLQ+NLW+GAMETTTN+H+DANHNLLFVLKG K V L+PP MT V AMPV
Sbjct: 9 VVRWRDVGSEGVMSYMAPKMAQNHPLLMSGHWAHQVLNKDAAQRWSTFTGIKSVLAARGLDQLRVDISCTKKGDSFRGDKASRQQVNLKLMDMVEIAEAQELGQPHWASSDEVGLDYYLCQCPVVSREEGKPEVLSAIAGEFRTPSCVSKEDLLQINLWMGAMETTTNLHYDANHNLLFVLKGSKRVALLPPDMTAGVHAMPV 211
BLAST of mRNA_H-elongata_contig69442.14594.1 vs. uniprot
Match: A0A6H5JNV2_9PHAE (JmjC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNV2_9PHAE) HSP 1 Score: 331 bits (849), Expect = 6.670e-108 Identity = 151/203 (74.38%), Postives = 175/203 (86.21%), Query Frame = 1
Query: 1 VVKWRDVGQEGVMAFMGPLLAENRPLLMSGYWTHQVLHKDAVSKWKTFEGIKSVFLDQGLDQLRVDVSCTKKGDTFRGDHASRQYVNLRLMDMLNLAEASEMGKPHWATAEDVGLDYYLCQCPVFSREPGKPEVLSAIAREFRTPSCVLEEDLLQVNLWLGAMETTTNMHFDANHNLLFVLKGHKSVVLMPPSMTGAVGAMPV 609
VV+WRDVG EGVM++M P +AEN PLLM GYW HQVL+KDA +W TF GIKSV +GLDQLRVD+SCTKKG++FRGD ASRQ VNL+LMDM+ +AEA E+G+PHWA++++VGLDYYLCQCPV SRE GKPEVLSAIA EFRTPSCV EEDLLQ+NLW+GAMETTTN+H+DANHNLLFVLKG K V L+PP MT V AMPV
Sbjct: 9 VVRWRDVGSEGVMSYMAPKMAENHPLLMCGYWAHQVLNKDAAQRWSTFAGIKSVLATRGLDQLRVDISCTKKGNSFRGDKASRQQVNLKLMDMVEIAEAQELGQPHWASSDEVGLDYYLCQCPVISREEGKPEVLSAIAGEFRTPSCVAEEDLLQINLWMGAMETTTNLHYDANHNLLFVLKGSKRVALLPPDMTADVDAMPV 211
BLAST of mRNA_H-elongata_contig69442.14594.1 vs. uniprot
Match: A0A482SWS7_9ARCH (JmjC domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SWS7_9ARCH) HSP 1 Score: 90.9 bits (224), Expect = 3.750e-18 Identity = 47/136 (34.56%), Postives = 76/136 (55.88%), Query Frame = 1
Query: 193 VDVSCTKKGDTFRGDHASRQYVNLRLMDMLNLAEASEMGKPHWATAEDVGLDYYLCQCPVFSREPGK-----PEVLSAIAREFRTPSCVLEEDLLQVNLWLGAMETTTNMHFDANHNLLFVLKGHKSVVLMPPSMT 585
DVSC+ + F G+ R+ VN++L D + +A + HW GL YL QC +++ + PE+L + PSC+ E + VN+W+ E+ ++ H+DANHNLL +++GHK+ L+PPS+T
Sbjct: 46 ADVSCSHN-EEFNGNPTQREQVNIKLADFITAHQALSANQDHWLLHS--GLSLYLSQCCLYAADSAAIQVPYPELLQHL------PSCLQGEVIDAVNVWMNLQESKSSCHYDANHNLLVMVQGHKTAFLIPPSLT 172
BLAST of mRNA_H-elongata_contig69442.14594.1 vs. uniprot
Match: F0W3B7_9STRA (Uncharacterized protein AlNc14C12G1494 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W3B7_9STRA) HSP 1 Score: 89.0 bits (219), Expect = 3.150e-17 Identity = 50/146 (34.25%), Postives = 75/146 (51.37%), Query Frame = 1
Query: 193 VDVSCTKKGDT-FRGDHASRQYVNLRLMDMLNLAEASEMGKPHWATAEDVGLDYYLCQCPVFSRE-PGKPEVLSA-----IAREFRTPSCVLEEDLLQVNLWLGAMETTTNMHFDANHNLLFVLKGHKSVVLMPPSMTGAVGAMPV 609
VDV+ ++ + GD SRQ V L+ D + A HW + L++YLCQCP+F + P + +L + + F P + E+L Q+NLW+ A + TN+H+DA N+L VL G K V L PPS + P+
Sbjct: 50 VDVAIKNVQESIYSGDERSRQSVELKFGDFITYYTAKYTNTDHWLRSVS-DLEFYLCQCPMFVHDRPSENGILKKPSLPKLMQHFHVPDLLNREELSQINLWMAAAPSETNIHYDAYQNILVVLAGKKVVTLYPPSEFAKLRPYPI 194
BLAST of mRNA_H-elongata_contig69442.14594.1 vs. uniprot
Match: A0A836CMX0_9STRA (Cupin-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMX0_9STRA) HSP 1 Score: 87.8 bits (216), Expect = 5.500e-17 Identity = 42/84 (50.00%), Postives = 54/84 (64.29%), Query Frame = 1
Query: 355 LCQCPVFSREPGKPEVLSAIAREFRTPSCVLEEDLLQVNLWLGAMETTTNMHFDANHNLLFVLKGHKSVVLMPPSMTGAVGAMP 606
L C + S EP KP + +A FR P+ + E +LLQ+ LW G ET+TN+H+D NHN+LFVL G K V L+PPS T V A P
Sbjct: 3 LSMCCIASSEPDKPVAVPQLAPCFRAPAFIDETELLQICLWAGPQETSTNLHYDCNHNVLFVLAGSKVVTLLPPSATPRVKAFP 86
BLAST of mRNA_H-elongata_contig69442.14594.1 vs. uniprot
Match: A0A8J2WTB6_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WTB6_9STRA) HSP 1 Score: 81.6 bits (200), Expect = 1.130e-14 Identity = 50/157 (31.85%), Postives = 78/157 (49.68%), Query Frame = 1
Query: 169 DQGLDQLRVDVSCTKKGDTFRGDHASRQYVNLRLMDMLNLAEASEMGKPHWATAEDVGLDYYLCQCPVFSREPGKPEVLSAIAR-----------EFRTPSCVLEEDLLQVNLWLGAMETTTNMHFDANHNLLFVLKGHKSVVLMPPSMTGAVGAMP 606
++ L LRV+ + G + GD R+ V+++L +L+L EA + HW G +YYL Q P+++ E A+A + SC L NLWL T++ H D +HN+L VL+G K+V+L+PPS +GA+P
Sbjct: 55 NETLKILRVEAQVNESGGDYHGDEVRRRDVSIKLTSVLSLLEAHGDAQ-HWLREATDGAEYYLAQAPLYAITSEGSETRHALADLVLSSKGSPMPPWLAGSCTL-------NLWLSPGATSSAPHCDESHNVLTVLRGRKTVLLLPPSSGADLGALP 203
BLAST of mRNA_H-elongata_contig69442.14594.1 vs. uniprot
Match: A0A024FZE7_9STRA (JmjC domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024FZE7_9STRA) HSP 1 Score: 71.2 bits (173), Expect = 4.060e-11 Identity = 38/122 (31.15%), Postives = 58/122 (47.54%), Query Frame = 1
Query: 262 LRLMDMLNLAEASEMGKPHWATAEDVGLDYYLCQCPVFSREP------GKPEVLSAIAREFRTPSCVLEEDLLQVNLWLGAMETTTNMHFDANHNLLFVLKGHKSVVLMPPSMTGAVGAMPV 609
++ D + A HW + L++YLCQCP+F E L + + F+ P + E + Q+N W+ A + TN+H+DA N+L VL G K V L PPS + P+
Sbjct: 1 MKFGDYITYYTAKYTNNNHWLCSVS-DLEFYLCQCPMFVDEETIEKGVSMKTSLPKLMQHFQIPDLLEREKVSQINFWMAAAPSQTNIHYDAYQNILVVLSGKKVVTLYPPSEYAKLHPYPI 121
BLAST of mRNA_H-elongata_contig69442.14594.1 vs. uniprot
Match: E1Z4R8_CHLVA (JmjC domain-containing protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1Z4R8_CHLVA) HSP 1 Score: 59.7 bits (143), Expect = 5.150e-7 Identity = 49/184 (26.63%), Postives = 78/184 (42.39%), Query Frame = 1
Query: 106 VLHKDAVSKWKTFEGIKSVFLDQGLDQLRVDVSCTKKGDTFRGDHASRQYVNLRLMDMLNLAEASEMGKPHWATAEDVGLDYYLCQCPV-FSREPG--------------KPEVLSAIAREFRTPSCVLEEDLLQVNLWLGAMETTTNMHFDANHNLLFVLKGHKSVVLMPPSMTGAVGAMPVS 612
V H AV W+ G++ V Q + RV+ T G+ GD + L + L+ ++ + A + L YL Q PV + PG +P L A+ + P + L Q N W T +++H+D NLL V++G K+V L+PPS T + P++
Sbjct: 23 VAHWPAVQLWRGESGLQRVM--QLAGEARVEAMVTG-GEQAVGDMQHLVLLGTTLREFLDGTLERQLAQRQPPGAAPLRL--YLAQSPVCVAAPPGTGSSGGAGSGTARMQPAALQALMEDLGAPCLIQRVQLSQANFWASLRATRSSLHYDPYSNLLCVVRGAKTVWLLPPSATPHLAPQPLT 201
BLAST of mRNA_H-elongata_contig69442.14594.1 vs. uniprot
Match: A0A2P6NH08_9EUKA (JmjC domain-containing protein D n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NH08_9EUKA) HSP 1 Score: 57.4 bits (137), Expect = 2.900e-6 Identity = 34/116 (29.31%), Postives = 58/116 (50.00%), Query Frame = 1
Query: 238 HASRQYVNLRLMDMLNLAEASEMGKPHWATAEDVGLDYYLCQCPVFSREPGKPEVLSAIAREFRTPSCVLEEDLLQVNLWLGAMETTTNMHFDANHNLLFVLKGHKSVVLMPPSMT 585
++S + + +L+ +++ + ED L YLCQ P++ G LS+ TP E L +NLW+G +ET +N+H+D + N+L VL G K + L P+ +
Sbjct: 41 NSSEEMLTAKLLQSHFFQSNTQIERTQSTPKEDDHL--YLCQSPIYDIN-GSTGPLSSFMDLIETP-----EKLNSINLWMGNLETKSNLHYDVSDNILCVLAGSKRITLYHPNQS 148 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig69442.14594.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig69442.14594.1 >prot_H-elongata_contig69442.14594.1 ID=prot_H-elongata_contig69442.14594.1|Name=mRNA_H-elongata_contig69442.14594.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=204bp VVKWRDVGQEGVMAFMGPLLAENRPLLMSGYWTHQVLHKDAVSKWKTFEGback to top mRNA from alignment at H-elongata_contig69442:264..1768- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig69442.14594.1 ID=mRNA_H-elongata_contig69442.14594.1|Name=mRNA_H-elongata_contig69442.14594.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1505bp|location=Sequence derived from alignment at H-elongata_contig69442:264..1768- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig69442:264..1768- >mRNA_H-elongata_contig69442.14594.1 ID=mRNA_H-elongata_contig69442.14594.1|Name=mRNA_H-elongata_contig69442.14594.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1224bp|location=Sequence derived from alignment at H-elongata_contig69442:264..1768- (Himanthalia elongata Himel1 dioecious)back to top |