mRNA_H-elongata_contig6942.14592.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig6942.14592.1
Unique NamemRNA_H-elongata_contig6942.14592.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig6942.14592.1 vs. uniprot
Match: A0A6H5J864_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J864_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 5.760e-20
Identity = 44/50 (88.00%), Postives = 45/50 (90.00%), Query Frame = 1 
Query:  247 VGAIIAGMINNAGDTGVQHFGCWALANVGWGQPDVQRFAREEGALEVIQV 396
            VGAIIA MINNA DT VQHFGCWALANVGWGQ DVQRFAREEGA+E IQV
Sbjct:  224 VGAIIAAMINNADDTSVQHFGCWALANVGWGQADVQRFAREEGAIEAIQV 273
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BLAST of mRNA_H-elongata_contig6942.14592.1 vs. uniprot
Match: D7FNZ2_ECTSI (Protein kinase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNZ2_ECTSI)

HSP 1 Score: 92.4 bits (228), Expect = 3.490e-19
Identity = 44/49 (89.80%), Postives = 45/49 (91.84%), Query Frame = 1 
Query:  247 VGAIIAGMINNAGDTGVQHFGCWALANVGWGQPDVQRFAREEGALEVIQ 393
            VGAIIA MINNA DT VQHFGCWALANVGWGQ DVQRFAREEGA+EVIQ
Sbjct:  732 VGAIIAAMINNADDTSVQHFGCWALANVGWGQADVQRFAREEGAIEVIQ 780
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6942.14592.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5J864_9PHAE5.760e-2088.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FNZ2_ECTSI3.490e-1989.80Protein kinase domain-containing protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig6942contigH-elongata_contig6942:4124..5117 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score93.6
Seed ortholog evalue7.6e-17
Seed eggNOG ortholog2880.D7FNZ2
Preferred nameANKRD44
KEGG rclassRC00453
KEGG koko:K01597,ko:K15503,ko:K20129
KEGG ReactionR01121
KEGG Pathwayko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130
KEGG ModuleM00095
GOsGO:0000902,GO:0000904,GO:0002064,GO:0003382,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0006810,GO:0006897,GO:0007275,GO:0008150,GO:0009653,GO:0009790,GO:0009888,GO:0009987,GO:0016043,GO:0016192,GO:0030154,GO:0030855,GO:0032501,GO:0032502,GO:0032989,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0048468,GO:0048598,GO:0048856,GO:0048869,GO:0051179,GO:0051234,GO:0060429,GO:0071840,GO:0098657
EggNOG free text desc.protein kinase activity
EggNOG OGsCOG0515@1,KOG0192@2759
EC4.1.1.33
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01009,ko03400,ko04131
Hectar predicted targeting categoryother localisation
Exons3
Model size402
Cds size402
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig6942.14592.1prot_H-elongata_contig6942.14592.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig6942 4124..5117 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931092.220384-CDS-H-elongata_contig6942:4123..42671622931092.220384-CDS-H-elongata_contig6942:4123..4267Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6942 4124..4267 +
1691679694.582624-CDS-H-elongata_contig6942:4123..42671691679694.582624-CDS-H-elongata_contig6942:4123..4267Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6942 4124..4267 +
1622931092.2336035-CDS-H-elongata_contig6942:4620..47601622931092.2336035-CDS-H-elongata_contig6942:4620..4760Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6942 4621..4760 +
1691679694.6006925-CDS-H-elongata_contig6942:4620..47601691679694.6006925-CDS-H-elongata_contig6942:4620..4760Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6942 4621..4760 +
1622931092.257882-CDS-H-elongata_contig6942:4999..51171622931092.257882-CDS-H-elongata_contig6942:4999..5117Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6942 5000..5117 +
1691679694.6094732-CDS-H-elongata_contig6942:4999..51171691679694.6094732-CDS-H-elongata_contig6942:4999..5117Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6942 5000..5117 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig6942.14592.1

>prot_H-elongata_contig6942.14592.1 ID=prot_H-elongata_contig6942.14592.1|Name=mRNA_H-elongata_contig6942.14592.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=134bp
MAAFPADPELQGESCTAVTNISHNCDRNRMLVAEAGGIVLILDAMQARAF
PGDPKLQRQACWALLTLAANDDISRMIATEGGVGAIIAGMINNAGDTGVQ
HFGCWALANVGWGQPDVQRFAREEGALEVIQVRL
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mRNA from alignment at H-elongata_contig6942:4124..5117+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig6942.14592.1 ID=mRNA_H-elongata_contig6942.14592.1|Name=mRNA_H-elongata_contig6942.14592.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=994bp|location=Sequence derived from alignment at H-elongata_contig6942:4124..5117+ (Himanthalia elongata Himel1 dioecious)
ATGGCTGCCTTCCCAGCCGACCCAGAGCTTCAAGGAGAATCGTGCACGGC
CGTAACAAATATATCACATAATTGCGACCGGAACCGGATGCTTGTGGCCG
AGGCGGGGGGTATCGTCCTCATACTTGATGCAATGCAGGCAAGGGTGATC
CAAGTACTCCACATTGCGCGAAGCAGAGGACATATGGACTTCACCGAGGG
CTGTGTATCGGAGTACAACTTAATCGTTGCAAATTAATGCATCCCATAAA
ATATGGCGTGTCAGCGTTCTAGGGATGAATAATAAGCTGTGTCTTTTTGT
GCGACAATTTCCTGTTCGCTTCATTATTGACAAACAAAAGTGGTACTTTC
TGTTTTTTGCGCTTCTTTATTTTTATTCGCAAAAAATTTAGAAACAAAAT
AATTATCATATATCGATCCGCGTGAAACAGACCCCGTACCTAACCCATCC
AGTCTGCTCCTTGTTGCCACCCGTGTCGATAAACACAACGCGTGCAGGCA
TTCCCCGGAGACCCGAAACTGCAACGGCAAGCTTGCTGGGCCCTCCTGAC
TCTGGCTGCTAACGACGATATTTCGAGGATGATTGCAACCGAGGGTGGCG
TTGGCGCAATAATCGCGGGCATGATAAACAACGCCGGGTGAGATGAAATC
CGCGAGCACTCCGGAGTGTGGATTGAGAGAGGCACTCTGTGTGCAGTCAA
AGAGCTGGCCAAGCACTTATAAAGCAAAATTTTGAACTTAGTTGTTCCCC
GCTCCTCTAAGCGCGTCTCCTAATTTTTGCCTCGAAACTGTGCGGAATAC
CGAGGGTGTATAGCACCGACGTTTTCAGCGTCTCAGCTGTCTAGCGTCTT
CGCATCGTCGGAATCTGATTACGCAGTGACACTGGTGTCCAACATTTTGG
CTGCTGGGCTCTGGCGAACGTGGGGTGGGGGCAGCCAGACGTGCAGAGGT
TTGCGAGAGAGGAAGGGGCTCTAGAAGTGATACAGGTAAGATTG
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Coding sequence (CDS) from alignment at H-elongata_contig6942:4124..5117+

>mRNA_H-elongata_contig6942.14592.1 ID=mRNA_H-elongata_contig6942.14592.1|Name=mRNA_H-elongata_contig6942.14592.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=804bp|location=Sequence derived from alignment at H-elongata_contig6942:4124..5117+ (Himanthalia elongata Himel1 dioecious)
ATGGCTGCCTTCCCAGCCGACCCAGAGCTTCAAGGAGAATCGTGCACGGC
CGTAACAAATATATCACATAATTGCGACCGGAACCGGATGCTTGTGGCCG
AGGCGGGGGGTATCGTCCTCATACTTGATGCAATGCAGGCAAGGATGGCT
GCCTTCCCAGCCGACCCAGAGCTTCAAGGAGAATCGTGCACGGCCGTAAC
AAATATATCACATAATTGCGACCGGAACCGGATGCTTGTGGCCGAGGCGG
GGGGTATCGTCCTCATACTTGATGCAATGCAGGCAAGGGCATTCCCCGGA
GACCCGAAACTGCAACGGCAAGCTTGCTGGGCCCTCCTGACTCTGGCTGC
TAACGACGATATTTCGAGGATGATTGCAACCGAGGGTGGCGTTGGCGCAA
TAATCGCGGGCATGATAAACAACGCCGGGCATTCCCCGGAGACCCGAAAC
TGCAACGGCAAGCTTGCTGGGCCCTCCTGACTCTGGCTGCTAACGACGAT
ATTTCGAGGATGATTGCAACCGAGGGTGGCGTTGGCGCAATAATCGCGGG
CATGATAAACAACGCCGGTGACACTGGTGTCCAACATTTTGGCTGCTGGG
CTCTGGCGAACGTGGGGTGGGGGCAGCCAGACGTGCAGAGGTTTGCGAGA
GAGGAAGGGGCTCTAGAAGTGATACAGGTAAGATTGTGACACTGGTGTCC
AACATTTTGGCTGCTGGGCTCTGGCGAACGTGGGGTGGGGGCAGCCAGAC
GTGCAGAGGTTTGCGAGAGAGGAAGGGGCTCTAGAAGTGATACAGGTAAG
ATTG
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