mRNA_H-elongata_contig694.14590.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig694.14590.1
Unique NamemRNA_H-elongata_contig694.14590.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig694.14590.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig694contigH-elongata_contig694:2885..3775 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size891
Cds size519
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig694.14590.1prot_H-elongata_contig694.14590.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig694 2950..3468 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931091.89425-UTR-H-elongata_contig694:2884..29491622931091.89425-UTR-H-elongata_contig694:2884..2949Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig694 2885..2949 +
1691679694.4422665-UTR-H-elongata_contig694:2884..29491691679694.4422665-UTR-H-elongata_contig694:2884..2949Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig694 2885..2949 +
1622931091.9490905-UTR-H-elongata_contig694:3468..37751622931091.9490905-UTR-H-elongata_contig694:3468..3775Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig694 3469..3775 +
1691679694.4737084-UTR-H-elongata_contig694:3468..37751691679694.4737084-UTR-H-elongata_contig694:3468..3775Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig694 3469..3775 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931091.9126062-CDS-H-elongata_contig694:2949..34681622931091.9126062-CDS-H-elongata_contig694:2949..3468Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig694 2950..3468 +
1691679694.460815-CDS-H-elongata_contig694:2949..34681691679694.460815-CDS-H-elongata_contig694:2949..3468Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig694 2950..3468 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig694.14590.1

>prot_H-elongata_contig694.14590.1 ID=prot_H-elongata_contig694.14590.1|Name=mRNA_H-elongata_contig694.14590.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=173bp
MILMSMLLQSPTEIGPRAALLQHYDVVTQSTEQSKTRVCCKGCTHEFAGT
TARMAAHFTRTANPNVPLCSNPPEGATNADNSFLVASTKKHVIANKRKAD
EGAANSKQLSIWKMLDGKGHESANAAFARMVFAHGLSFNIGTSKYFLDVM
EEARKTPGWKPQGRIAVSTSIL*
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mRNA from alignment at H-elongata_contig694:2885..3775+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig694.14590.1 ID=mRNA_H-elongata_contig694.14590.1|Name=mRNA_H-elongata_contig694.14590.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=891bp|location=Sequence derived from alignment at H-elongata_contig694:2885..3775+ (Himanthalia elongata Himel1 dioecious)
TAACAGACCATCCTGGTGGCGATGGCAGAGGACACAGAGACCACATAACC
GACCACAGCAGCAGCATGATCTTGATGTCCATGCTTCTGCAATCGCCGAC
TGAGATTGGGCCTCGGGCGGCACTGCTGCAGCACTACGACGTTGTGACGC
AAAGCACCGAGCAGTCAAAAACTCGGGTGTGTTGCAAGGGGTGCACTCAC
GAGTTTGCAGGTACCACAGCGCGAATGGCGGCGCACTTCACACGCACCGC
CAACCCAAATGTCCCCCTGTGCTCCAATCCTCCCGAGGGAGCCACGAACG
CTGATAATTCGTTTCTCGTAGCTTCTACGAAGAAGCACGTTATCGCCAAC
AAGCGAAAGGCTGACGAAGGTGCGGCCAACTCCAAACAACTCAGCATTTG
GAAGATGCTGGACGGCAAGGGCCATGAGAGCGCTAATGCAGCGTTCGCCC
GGATGGTATTTGCGCATGGGTTATCGTTCAACATCGGCACTAGCAAGTAC
TTCTTGGACGTGATGGAGGAAGCTCGTAAAACCCCGGGGTGGAAGCCGCA
GGGGAGGATTGCAGTGAGCACCTCTATTCTCTGAGTACACTTTGATGCTC
TTGTACCTTTAAACTTTTGGGGGTAGTTTTTGGTCCAGAGTACCGTATTA
TTTTAGTTTTGGAATGAACACCTTCGGTGCATGGCTTTGTGTTTCTGTTT
ACGCTTTGGACGGTGGCGGTGCAGTGTGGACGGTGGAGCATCATATGTGT
AAAAACAACCAACAAAACATGCTGTGAGCGAGACGAAGGTGTACAGCATA
AAGAGCTGAGTGCGTAACAGAGGGAAGTCAATTATGTTGCGTTGTCGCTT
CAGTGTAAGCCCGTATGCTAATGTAAATCCACATAATCGTT
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Coding sequence (CDS) from alignment at H-elongata_contig694:2885..3775+

>mRNA_H-elongata_contig694.14590.1 ID=mRNA_H-elongata_contig694.14590.1|Name=mRNA_H-elongata_contig694.14590.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1038bp|location=Sequence derived from alignment at H-elongata_contig694:2885..3775+ (Himanthalia elongata Himel1 dioecious)
ATGATCTTGATGTCCATGCTTCTGCAATCGCCGACTGAGATTGGGCCTCG
GGCGGCACTGCTGCAGCACTACGACGTTGTGACGCAAAGCACCGAGCAGT
CAAAAACTCGGGTGTGTTGCAAGGGGTGCACTCACGAGTTTGCAGGTACC
ACAGCGCGAATGGCGGCGCACTTCACACGCACCGCCAACCCAAATGTCCC
CCTGTGCTCCAATCCTCCCGAGGGAGCCACGAACGCTGATAATTCGTTTC
TCGTAGCTTCTACGAAGAAGCACGTTATCGCCAACAAGCGAAAGGCTGAC
GAAGGTGCGGCCAACTCCAAACAACTCAGCATTTGGAAGATGCTGGACGG
CAAGGGCCATGAGAGCGCTAATGCAGCGTTCGCCCGGATGGTATTTGCGC
ATGGGTTATCGTTCAACATCGGCACTAGCAAGTACTTCTTGGACGTGATG
GAGGAAGCTCGTAAAACCCCGGGGTGGAAGCCGCAGGGGAGGATTGCAGT
GAGCACCTCTATTCTCTGAATGATCTTGATGTCCATGCTTCTGCAATCGC
CGACTGAGATTGGGCCTCGGGCGGCACTGCTGCAGCACTACGACGTTGTG
ACGCAAAGCACCGAGCAGTCAAAAACTCGGGTGTGTTGCAAGGGGTGCAC
TCACGAGTTTGCAGGTACCACAGCGCGAATGGCGGCGCACTTCACACGCA
CCGCCAACCCAAATGTCCCCCTGTGCTCCAATCCTCCCGAGGGAGCCACG
AACGCTGATAATTCGTTTCTCGTAGCTTCTACGAAGAAGCACGTTATCGC
CAACAAGCGAAAGGCTGACGAAGGTGCGGCCAACTCCAAACAACTCAGCA
TTTGGAAGATGCTGGACGGCAAGGGCCATGAGAGCGCTAATGCAGCGTTC
GCCCGGATGGTATTTGCGCATGGGTTATCGTTCAACATCGGCACTAGCAA
GTACTTCTTGGACGTGATGGAGGAAGCTCGTAAAACCCCGGGGTGGAAGC
CGCAGGGGAGGATTGCAGTGAGCACCTCTATTCTCTGA
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