mRNA_H-elongata_contig69385.14589.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig69385.14589.1
Unique NamemRNA_H-elongata_contig69385.14589.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig69385.14589.1 vs. uniprot
Match: D7FIK6_ECTSI (Smr domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIK6_ECTSI)

HSP 1 Score: 92.4 bits (228), Expect = 2.650e-22
Identity = 46/73 (63.01%), Postives = 55/73 (75.34%), Query Frame = 1 
Query:    1 MFLEEFDPPLASHFEPGNMGRLRVCKRDLVEWCTRQSSAKKMRAPAPADAVVGLKLRGVADLKREYDKAVLAA 219
            M LEEF+PPL +HF+P N GRL+V K D++ WC+R+S  K  RAPAPAD V  LKLRGVADLK  YD+AV  A
Sbjct:   43 MLLEEFEPPLPTHFDPTNDGRLQVRKEDILAWCSRESE-KGRRAPAPADDVGSLKLRGVADLKLAYDRAVYEA 114
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BLAST of mRNA_H-elongata_contig69385.14589.1 vs. uniprot
Match: A0A6H5KNR8_9PHAE (Smr domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNR8_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 6.220e-20
Identity = 45/70 (64.29%), Postives = 54/70 (77.14%), Query Frame = 1 
Query:    1 MFLEEFDPPLASHFEPGNMGRLRVCKRDLVEWCTRQSSAKKMRAPAPADAVVGLKLRGVADLKREYDKAV 210
            M LEEF+PPL +HF+P N GRL+V K D++ WC+R+S  K  RAPAPAD V  LKLRGVADLK  YD+AV
Sbjct: 1062 MLLEEFEPPLPTHFDPTNDGRLQVRKEDILAWCSRESE-KGRRAPAPADDVGSLKLRGVADLKLAYDRAV 1130
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig69385.14589.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FIK6_ECTSI2.650e-2263.01Smr domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KNR8_9PHAE6.220e-2064.29Smr domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig69385contigH-elongata_contig69385:2348..3224 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-27_000100.1
Exons2
Model size219
Cds size219
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931091.8310354-CDS-H-elongata_contig69385:2347..24971622931091.8310354-CDS-H-elongata_contig69385:2347..2497Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69385 2348..2497 -
1691679694.4125614-CDS-H-elongata_contig69385:2347..24971691679694.4125614-CDS-H-elongata_contig69385:2347..2497Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69385 2348..2497 -
1622931091.8520358-CDS-H-elongata_contig69385:3155..32241622931091.8520358-CDS-H-elongata_contig69385:3155..3224Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69385 3156..3224 -
1691679694.4249191-CDS-H-elongata_contig69385:3155..32241691679694.4249191-CDS-H-elongata_contig69385:3155..3224Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69385 3156..3224 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig69385.14589.1prot_H-elongata_contig69385.14589.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig69385 2348..3224 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig69385.14589.1

>prot_H-elongata_contig69385.14589.1 ID=prot_H-elongata_contig69385.14589.1|Name=mRNA_H-elongata_contig69385.14589.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=73bp
MFLEEFDPPLASHFEPGNMGRLRVCKRDLVEWCTRQSSAKKMRAPAPADA
VVGLKLRGVADLKREYDKAVLAA
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mRNA from alignment at H-elongata_contig69385:2348..3224-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig69385.14589.1 ID=mRNA_H-elongata_contig69385.14589.1|Name=mRNA_H-elongata_contig69385.14589.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=877bp|location=Sequence derived from alignment at H-elongata_contig69385:2348..3224- (Himanthalia elongata Himel1 dioecious)
ATGTTCCTTGAGGAGTTCGATCCTCCGCTCGCGTCCCATTTCGAGCCCGG
AAACATGGGGCGTTTGAGGGTGAGTATAACCCCTAGAGCGTCCGCAGGTA
TCATACAATCTCCGGCGGCCCCCCCCGTGATGCATGCACTGCGCCATTAA
TGTATCAAACAATTAAGAATAAAAAACAGAAGCACCCACACCCACACCCA
CACACACACACGCACATAAACAGCCGATACCACTATAACATATTTTTATT
AAAAAACATATAAACTCATGAAAACCCTCCGAACATGAGTTCATATGTTT
TTTAATAAAAATATGTTGGAGTTGTATCGGTTGTTGACGTGTGTGTGTGT
ATGGATCCTGTTGCTTTTGCATTGATTAACTTGTTTTTAGTGTTGCCAGT
TACGATTATGTAAAAGACAAACAAAAACGATTTTGTTTTCAACGATGGCC
TCTGAGATAAGACACACACACCGTTTCCAATCAGCAATCGATCATATAAG
TAGGAACAATGCTCCACCCTGTCAAGGACGCATGATCAATGGTCTTACCA
GCTAAGGGAACCAAAATTTGAGTATATCGTTCCCCCGTCCCCCTTCCCCT
CTCGGGGTTTCTTTCCCTCTCGTCGAGGTACGCGTTCTCCTGTCCCCGGG
GCCCTTTGTGTGTGTCTTGCTCTCTTATAGCCCGCCTCTGTTTCTGTCTC
TCTGACGCGCGATTGATCTCATATAAGGTCTGCAAGCGAGACTTGGTGGA
ATGGTGCACGCGACAATCCTCCGCGAAAAAAATGCGGGCGCCCGCGCCCG
CGGACGCCGTCGTTGGCCTGAAGCTCCGAGGTGTGGCCGACTTGAAGAGG
GAGTACGATAAGGCTGTTCTGGCAGCG
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Coding sequence (CDS) from alignment at H-elongata_contig69385:2348..3224-

>mRNA_H-elongata_contig69385.14589.1 ID=mRNA_H-elongata_contig69385.14589.1|Name=mRNA_H-elongata_contig69385.14589.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=438bp|location=Sequence derived from alignment at H-elongata_contig69385:2348..3224- (Himanthalia elongata Himel1 dioecious)
ATGTTCCTTGAGGAGTTCGATCCTCCGCTCGCGTCCCATTTCGAGCCCGG
AAACATGGGGCGTTTGAGGATGTTCCTTGAGGAGTTCGATCCTCCGCTCG
CGTCCCATTTCGAGCCCGGAAACATGGGGCGTTTGAGGGTCTGCAAGCGA
GACTTGGTGGAATGGTGCACGCGACAATCCTCCGCGAAAAAAATGCGGGC
GCCCGCGCCCGCGGACGCCGTCGTTGGCCTGAAGCTCCGAGGTGTGGCCG
ACTTGAAGAGGGAGTACGATAAGGCTGTTCTGGCAGCGGTCTGCAAGCGA
GACTTGGTGGAATGGTGCACGCGACAATCCTCCGCGAAAAAAATGCGGGC
GCCCGCGCCCGCGGACGCCGTCGTTGGCCTGAAGCTCCGAGGTGTGGCCG
ACTTGAAGAGGGAGTACGATAAGGCTGTTCTGGCAGCG
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