mRNA_H-elongata_contig6935.14582.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig6935.14582.1
Unique NamemRNA_H-elongata_contig6935.14582.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig6935.14582.1 vs. uniprot
Match: D8LSB0_ECTSI (DNA-directed primase/polymerase protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSB0_ECTSI)

HSP 1 Score: 450 bits (1158), Expect = 5.620e-137
Identity = 284/603 (47.10%), Postives = 345/603 (57.21%), Query Frame = 3
Query:  765 LEHVYEIIREGSPCRMYFDLEFARAHNPGLDGECLVQAWINIVAGKIHQDFSITVGSCDFLDLDSSTPKKFSRHLILHLPGDQLFEDNSHVGRFVNTIAADLERWKSTSQPTSSSL---LGANKHGASAASTEAGSLHERAARQTS-----------THDSDDIXXXXXXXXXXXXXXXXXXXXXXXXDNTDALSGAQSLPEASAARPDPCSPWGAVSGDRGGGPGGDVSQGTSREVLETATGGKEVLNSLWVCDGDGRSVLFADVSVYTRNRCFRMVGSSKYGRSVTLKVANTNRRTLRHMGF--------------------EEGQEIKPGDMARTILHDSLVVPATLRCRSRETFLTVEG-EGAHHYSRFGRTQSRRLRGKLGSTSGG--NCWGTHGP--GDRGEACQREAEVG--------WRVTSNGFGSSPFPAIDAVLRTLIRQGGVQGSLRQWNYTAYEIA-------------------FENGEGRADCVRKA---------RRLTHQVSNNRWCWNIRRAHKSNHIFLVIDLSRGEVRQHCHDQDCRRSGYRSNPFRLPQDVVPSPDDLEAYELELGLSEAMRDSPADWAALS 2348
            L H+YEIIREG PCRMYFDLEFAR  NPGLDGE LV AWIN+VAGK+HQ+F ++VG+ + LDLDSSTPKKFSRHLI HLPGDQLF DNSHVGRFVN++AA+LE W++   P++ +    +G +    +A +  A ++     R              T  SDD               XXXXXXXXXX                                                           L  LWV DGDGR VLFADVSVYTRNRCFR++GSSK+G++  L+VA TN+RTL HM +                    E+ Q+++  D+ART+LHDSLVVP T R    E FLTV G  G H YSRFG    R+  G   S+     + W T+G    +RGE      + G        WRV+S GFG SPFPA+D+ LRTL+ QGG +G LRQW+YTA ++                       G G      ++         R+LTHQV+NNRWCWNI RAHKSNH+FLV DLSRGEVRQHCHDQ+CRRSGYRSNP RLP  V P  DDLEA+ELELGL+ AMR+SPADWAA++
Sbjct:  695 LRHMYEIIREGRPCRMYFDLEFARGPNPGLDGEELVCAWINVVAGKLHQEFGVSVGTSNVLDLDSSTPKKFSRHLIFHLPGDQLFLDNSHVGRFVNSLAAELESWRAPQSPSTPATPPGIGRDDIVPTATAAAAVAVPHCVIRSGGGNAGGGDHLGGTPSSDDFPTSAVPVPTVATAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-------------------------XXXXXXXXXXXXXXALERLWVKDGDGRRVLFADVSVYTRNRCFRLLGSSKFGKAACLRVAATNKRTLDHMVWRGRGGGTFARTSSSSLLSPREQKQQLR--DVARTLLHDSLVVPVTPRSSPAELFLTVGGGTGQHRYSRFG--SCRKQTGDCSSSQQRQQHGWSTNGTISAERGEHRGSSQDHGSGSSDGDGWRVSSQGFGPSPFPAVDSFLRTLVGQGGTRGELRQWSYTAGQVPPRTVEHDHQEXXXXXXXXXXAGGTGLVSPGSQSAPQPPATVVRKLTHQVANNRWCWNIGRAHKSNHVFLVTDLSRGEVRQHCHDQECRRSGYRSNPVRLPIGVAPLEDDLEAFELELGLAAAMRESPADWAAVA 1268          
BLAST of mRNA_H-elongata_contig6935.14582.1 vs. uniprot
Match: A0A6H5L6M6_9PHAE (DNA-directed primase/polymerase protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6M6_9PHAE)

HSP 1 Score: 328 bits (840), Expect = 1.340e-98
Identity = 221/532 (41.54%), Postives = 270/532 (50.75%), Query Frame = 3
Query: 1011 QLFEDNSHVGRFVNTIAADLERWKSTSQP-TSSSLLGANKHGASAASTEAGSLHERAARQTSTHDSDDIXXXXXXXXXXXXXXXXXXXXXXXXDNTDALSGAQSLPEASAARPDPCSPWGAVSGDRGGGPGGDVSQGTSREVLETATGGKE-------------------VLNSLWVCDGDGRSVLFADVSVYTRNRCFRMVGSSKYGRSVTLKVANTNRRTLRHMGF------------------------EEGQEIKPGDMARTILHDSLVVPATLRCRSRETFLTVEG-EGAHHYSRFGRTQSRRLRGKLGST--------SGGNCWGTHGPGDRGEA----CQREAEVGWRVTSNGFGSSPFPAIDAVLRTLIRQGGVQGSLRQWNYTAYEIAFE-----------NGEGR------------------ADCVRKARRLTHQVSNNRWCWNIRRAHKSNHIFLVIDLSRGEVRQHCHDQDCRRSGYRSNPFRLPQDVVPSPDDLEAYELELGLSEAMRDSPADWAALS 2348
            QLF DNSHVGRFVN++AA+LE W++   P TS++  G  +                          DDI                        D+    S +      S        P   V+  R  G  GD S G +  +       KE                    L  LWV DG+GR VLFADVSVYTRNRCFR++GSSK+G++  L+VA  N+RTL HM +                        E+ ++++  D+ART+LHDSLVVPAT R    E FLTV G  G H YSRFG   SR   G   S         S  +       G RG +    C      GWRV++ GFG SPFPA+D+ LRTL+ QGG +G LRQW+YTA ++              NG G                   A  VRK   LTHQV+NNRWCWNI RAHKSNH+FLV DLSRGEVRQHCHDQ+CRRSGYRSNP RLP  V P  DDLEA+ELE+GL+ AMR+SPADWAA++
Sbjct:   25 QLFLDNSHVGRFVNSLAAELESWRAPQSPSTSATPPGIGR--------------------------DDIVPTSAAVAVPHCGSRTGGGNTGRGDHLGGTSASDDFVPTSVV------PIPTVAKTRREG-NGDASTGLTPTIATAPKMAKEYCSNDDKTKGGXXXXXXAGALERLWVMDGNGRRVLFADVSVYTRNRCFRLLGSSKFGKAACLRVAAKNQRTLAHMVWRGRVGGAFARTSSXXXXXXXLSPREQKKQLR--DVARTLLHDSLVVPATPRTSPAERFLTVGGGAGQHRYSRFG--SSRNQAGDCSSLQQRQQHGWSTASTMSAERDGHRGSSQHHGCGSSDGDGWRVSTQGFGLSPFPAVDSFLRTLVCQGGTRGELRQWSYTAGQVPSRTVEHDGQEGNANGSGXXXXXXXXXXXXXXXPRTPATVVRK---LTHQVANNRWCWNIGRAHKSNHVFLVTDLSRGEVRQHCHDQECRRSGYRSNPVRLPMGVAPLEDDLEAFELEIGLAAAMRESPADWAAVA 516          
BLAST of mRNA_H-elongata_contig6935.14582.1 vs. uniprot
Match: UPI001CF1C6D4 (DNA-directed primase/polymerase protein-like n=1 Tax=Acropora millepora TaxID=45264 RepID=UPI001CF1C6D4)

HSP 1 Score: 178 bits (452), Expect = 3.410e-44
Identity = 163/541 (30.13%), Postives = 223/541 (41.22%), Query Frame = 3
Query:  729 WRIKTRTATYPRLEHVYEIIREGSPCRMYFDLEFARAHNPGLDGECLVQAWINIVAGKIHQDFSITVGSCDFLDLDSSTPKKFSRHLILHLPGDQLFEDNSHVGRFVNTIAADLER--WKSTSQPTSSSLLGANKHGASAASTEAGSLHERAARQTSTHDSDDIXXXXXXXXXXXXXXXXXXXXXXXXDNTDALSGAQSLPEASAARPDPCSPWGAVSGDRGGGPGGDVSQGTSREVLETATGGKEVLNSLWVCDGDGRSVLFADVSVYTRNRCFRMVGSSKYGRSVTLKVANTNRRTLRHMGFEEGQEIKPGDMARTILHDSLVVPATLRCRSRET-FLTVEGEGAHHYSRFGRTQSRRLRGKLGSTSGGNCWGTHGPGDRGEACQREAEVGWRVTSNGFGSSPFPAIDAVLRTLIRQGGVQGSLRQWNYTAYEIAFENGEGRADCVRKARRLTHQVSNNRWCWNIRRAHKSNHIFLVIDLSRGEVRQHCHDQDCRRSGYRSNPFRLPQDVVP-----------SPDDLEAYELELGLSE 2309
            W   TR +  PR ++ YE+I EG+PCR+YFDLEF    NP  DG  +V  +I  V  ++   + +       +DLDSST  KFSRHLI HLPG  +F+DN HVG FV  I A L+        QP S                    L ER+  + S +D+                             T A     S+ E  A +                       +G S E LE           L+V D  G  V F D  VYTRNR FR+  S+K G++  L V+N N   +     +E +     D       DSLV   +++   ++   LT E       S   +   RR +G LGS                             T  G+  S +  ID  + +++ +GGVQG +R+W Y      F  G           RL +++  NRWC NI R HKSNHI +V+D+ RG   Q CHD DC+R  YRS    +P D+ P             DD++  EL   L+E
Sbjct:   91 WYNYTRCS--PRQKNYYEVIPEGAPCRLYFDLEFKTKFNPDKDGTKMVDIFIKYVCYQLKSTYGLDCDRKFIVDLDSSTSSKFSRHLIFHLPG-AVFKDNIHVGNFVQHIIASLQTKLGYGLEQPDSQ-------------------LAERSGIRQSCNDT-----------------------------TPA-----SMYEEDAEK-----------------------RGISLEELE----------ELFVKDEKGSFVTFCDEGVYTRNRNFRIFKSTKIGKNSHLVVSNQN---MFKPSLKERKGSFSKDQEYFFFLDSLVSNVSMQVDGKDVKVLTFE-------SSCKKPPKRRAQG-LGSQV--------------------------PTQTGYEHSSYGDIDRFVLSVVNRGGVQGEIRKWTY------FSQGN----------RLIYEILKNRWCENIGRPHKSNHIMIVVDIRRGVYYQKCHDPDCKRIDYRSPERPIPDDINPLTSSQSVEDLFKSDDVDDAELCKALAE 489          
BLAST of mRNA_H-elongata_contig6935.14582.1 vs. uniprot
Match: K3WHZ0_GLOUD (DNA-directed primase/polymerase protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WHZ0_GLOUD)

HSP 1 Score: 164 bits (415), Expect = 2.430e-38
Identity = 151/519 (29.09%), Postives = 207/519 (39.88%), Query Frame = 3
Query:  747 TATYPRLEHVYEIIREGSPCRMYFDLEFARAHNPGLDGECLVQAWINIVAGKIHQDFSITVGSCDFLDLDSSTPKKFSRHLILHLPGDQLFEDNSHVGRFVNTIAADLERWKSTSQPTSSSLLGANKHGASAASTEAGSLHERAARQTSTHDSDDIXXXXXXXXXXXXXXXXXXXXXXXXDNTDALSGAQSLPEASAARPDPCSPWGAVSGDRGGGPGGDVSQGTSREVLETATGGKEVLNSLWVCDGDGRSVLFADVSVYTRNRCFRMVGSSKYGRSVTLKVANTNRRTLRHMGFEEGQEIKPGDMA--RTILHDSLVVPATLRCRSRETFLTVEGEGAHHYSRFGRTQSRRLRGKLGSTSGGNCWGTHGPGDRGEACQREAEVGWRVTSNGFGSSPFPAIDAVLRTLIRQGGVQGSLRQWNYTAYEIA-------------FENGEGRADCVRKARRLTHQVSNNRWCWNIRRAHKSNHIFLVIDLSRGEVRQHCHDQDCRRSGYRSNPFRLPQDVV 2258
            T+T P   HVYEIIREG PCR+YFDLEF +A NP ++G+ LV+  +++V  ++++ + I       + LDSST  KFSRHLI HLP  +LF DN H G F+                                      +H   A                                   D  D ++             D  SP+              VS G  R + +          S    D +    LF DV VYTRNR FR++GSSKY R   LK   T +         +      GD A  R +   SLV P          F T+     H  ++  R Q R L       S      T   G+R  +  +       V       S FP +DA + T+   GGVQG +R  +     +               +N E R    +    + +Q++ NRWCWN+RRAHKSN++  V+DL +  V Q CHDQ C+   YRS P  LP D++
Sbjct:  323 TSTKPDQRHVYEIIREGVPCRLYFDLEFKKACNPLVNGDELVERLVSLVQLQLYRKYGIHATREAVVQLDSSTNAKFSRHLIFHLPQGELFADNIHAGNFIREF-----------------------------------IHALVANPR--------------------------------DQVDEVN-------------DHPSPF-------------LVSTGQQRPIDDAYP------ESNNTGDHNRSKQLFIDVGVYTRNRMFRVLGSSKYRRDAILKPMPTAQ--------TQAAVTTAGDDALDRNLFLQSLVCP----------FPTLSSMETHFEAKKQR-QPRLLYCDAEYVS------TRSYGERQSSVYQRNTHSASVECR---HSMFPKLDAFILTISNTGGVQGEIRAIHMLFDNVNNVILPSDNFNDDFSQNEELRQQKKKHPWMVIYQMARNRWCWNVRRAHKSNNVMFVVDLDQRVVYQKCHDQQCKAIDYRSPPQPLPPDLL 714          
BLAST of mRNA_H-elongata_contig6935.14582.1 vs. uniprot
Match: A0A5D6XRH5_9STRA (DNA-directed primase/polymerase protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XRH5_9STRA)

HSP 1 Score: 160 bits (404), Expect = 4.680e-37
Identity = 146/514 (28.40%), Postives = 202/514 (39.30%), Query Frame = 3
Query:  771 HVYEIIREGSPCRMYFDLEFARAHNPGLDGECLVQAWINIVAGKIHQ-DFSITVGSCDFLDLDSSTPKKFSRHLILHLPGDQLFEDNSHVGRFVNTIAADLERWKSTSQPTSSSLLGANKHGASAASTEAGSLHERAARQTSTHDSDDIXXXXXXXXXXXXXXXXXXXXXXXXDNTDALSGAQSLPEASAARPDPCSPWGAVSGDRGGGPGGDVSQGTSREVLETATGGKEVLNSLWVCDGDGRSVLFADVSVYTRNRCFRMVGSSKYGRSVTLKVAN--TNRRTLRHMGFEEGQEIKPGDMARTILHDSLVVPATLRCRSRETFLTVEG-EGAHHYSRFGRTQSRRLRGKLGSTSGGN-CWGTHGPGD----RGEACQREAEVGWRVTSNGFGSSPFPAIDA-VLRTLIRQGGVQGSLR--QWNYTAYEIAF------ENGEGRADCVRKARRLTHQVSNNRWCWNIRRAHKSNHIFLVIDLSRGEVRQHCHDQDCRRSGYRSNPFRLPQDVV 2258
            HVYEIIRE  PCR+YFDLEF ++ NP +DG+ LV   +++V  ++ Q  F +       + LDSS   KFSRHLI HLP   LF DN H G FV     DL                                   +AR+    DS  +                                                                V+ G  ++    AT      N+L +     +  LF D  VYTRNR FR++GSSK+ R   L+     ++                   + R    D+LV P          F T+E  + + H +R       +    L  +SG    W   G       R  A +R A             S FP IDA VL T  R+GGV+G +R  Q  + + ++A       E+  G A   +    L +Q++ NRWCWN++RAHKSN++  V+DL +    Q CHDQ C    YRS P  LP D++
Sbjct:  301 HVYEIIRERVPCRLYFDLEFKKSCNPRVDGDQLVARLVSLVQLQLFQRKFHVHARREQIVQLDSSDAAKFSRHLIFHLPEGALFADNIHAGNFVRGFIHDLVE---------------------------------SAREAEDEDSPFL----------------------------------------------------------------VNTGREQQQQSVAT------NTLEIGPATPQRQLFIDTGVYTRNRMFRVLGSSKFRRDAVLRPLPLASSAXXXXXXXXXXXXXXXSSVLRRGTFLDALVCP----------FPTLEALQASPHGARVRLLHCEQDESALQRSSGARPLWAPAGRASNRLSRARAVERRA-------------SGFPKIDAFVLATARRRGGVEGEIRAVQVLFDSVDVALPGDPTPEHSSGGAAAPKTPWMLVYQMARNRWCWNVQRAHKSNNVMYVVDLEQRVCYQKCHDQVCNTVDYRSPPLPLPPDLL 688          
BLAST of mRNA_H-elongata_contig6935.14582.1 vs. uniprot
Match: UPI001403BC5D (DNA-directed primase/polymerase protein isoform X1 n=5 Tax=Petromyzon marinus TaxID=7757 RepID=UPI001403BC5D)

HSP 1 Score: 155 bits (391), Expect = 5.310e-35
Identity = 150/530 (28.30%), Postives = 213/530 (40.19%), Query Frame = 3
Query:  771 HVYEIIREGSPCRMYFDLEFARAHNPGLDGECLVQAWINIVAGKIHQDFSITVGSCDFLDLDSSTPKKFSRHLILHLPGDQLFEDNSHVGRFVNTI----AADLERWKSTSQPTSSSLLGANKHGAS--AASTEAGSLHER----------AARQTSTHDSD-------------DIXXXXXXXXXXXXXXXXXXXXXXXXDNTDALSGAQSLPEASAARPDPCSPWGAVSGDRGGGPGGDVSQGTSREVLETATGGKEVLNSLWVCDGDGRSVLFADVSVYTRNRCFRMVGSSKYGRSVTLKVANTNRRTLRHM---GFEEGQEIKPGD-MARTILHDSLVVPATLRCRSRETFLTVEGEGAHHYSRFGRTQSRRLRGKLGSTSGGNCWGTHGPGDRGEACQREAEVGWRVTSNGFGSSPFPAIDAVLRTLIRQGGVQGSLRQWNYTAYEIAFENGEGRADCVRKARRLTHQVSNNRWCWNIRRAHKSNHIFLVIDLSRGEVRQHCHDQDCRRSGYRSNPFRLPQDVVP 2261
            H YE+I EGS C +YFD+EF+R  NP LDG  L    I  V   I   + +   + D L LDSS+  KFSRHL+ H+PG   F+DN   G FV  I    A  +   K    P + S+           A ST +  L              + +T   D+D             D+                        D+T+         +A     D    W         GP     + +  ++L+     +  L +L V D  G+  L  D+ VYT+NR FR+ GSSK G  V L++A  +    + +   G    +E  P     R     +    A    R +E         A   +   R    RL   LGS        TH    R          G      G+ +SPFP IDA +R+ + +GGVQG +R W        F  G G          L ++ + NRWC N+ RAH+SN+    +DL +G   Q CHDQ+C+   +RS  + LPQ+ +P
Sbjct:  339 HYYEVIPEGSTCHLYFDVEFSRESNPDLDGGSLTATLIKYVCACIQACYGLACTTGDVLSLDSSSASKFSRHLLFHIPG-AAFQDNLQAGNFVRKIFKPLAEKICNIKLQGVPEAHSVCPTESPAVPHIAESTLSQMLQGEFKIKEPLDILESHKTLWDDADSNDSWIENWKREFDLESSRCGSENDQESKSNGECTGTLHDHTNT-----QFTKAGEMTLDCSETWYYPQDQGTSGP----EKRSLWDILDYRATWQHFLEALIVKDKTGQLTLAVDLGVYTKNRNFRLYGSSKAGVLVPLRLAPDDSYVAQRLPAWGIHRARETMPSTGTTRASERPACSSEAKKHVRLQEKIFL-----ASLITNVERAPGLRLLSCLGSPMD-----TH----RTNTFAANNAHGDAKLVTGYQASPFPEIDAYIRSQLNKGGVQGDIRCWK-------FYEGTGL---------LVYEATKNRWCENVGRAHRSNNTCYFVDLHQGIFYQKCHDQECKAIHFRSQNYPLPQECLP 828          
BLAST of mRNA_H-elongata_contig6935.14582.1 vs. uniprot
Match: A0A6S8THK3_9STRA (DNA-directed primase/polymerase protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A6S8THK3_9STRA)

HSP 1 Score: 154 bits (388), Expect = 9.040e-35
Identity = 154/564 (27.30%), Postives = 227/564 (40.25%), Query Frame = 3
Query:  759 PRLEHVYEIIREGSPCRMYFDLEFARAHNPGLDGE---CLVQAWINIVAGKIHQDFSITVGSCDFLDLDSSTPKKFSRHLILHLPGDQLFEDNSHVGRFVNTIAADLERWKSTSQ-----PTSSSLLGANKHGASAAS----------------TEAGSLHERAARQTSTHDSDDIXXXXXXXXXXXXXXXXXXXXXXXXDNTDA-LSGAQSLPEASAARPDPCSPWGAVSGDRGGGPGGDVSQGTSREVLETATGGKEVLNSLWVCDGDGRSVLFADVSVYTRNRCFRMVGSSKYGR--SVTLKVANTNRRTLRHMGFEEGQEIKPGDMA------RTILHDSLVVPATLRCRSRETFLTVEGEGAHHYSRFGRTQSRRLRGKLGSTSGGN---CWGTHGPGDRGEACQREAEVGWRVTSNGFGSSPFPAIDA-VLRTLIRQGGVQGSLRQWNYTAYEIA-FENGEGRADCVRKARRLTHQVSNNRWCWNIRRAHKSNHIFLVIDLSRGEVRQHCHDQDCRRSGYRSNPFRLPQDVVPSPDDL---EAYELELGLSEAMRDSP 2327
            P   H YE+IRE +PCR+YFDLE+ +  NPG+  E    L+  +I+ ++ +IH  F+I++      DLDSST KKFSRHLI H P  +LF D    G FV      L    +T       PT +  L  N    S+++                T++G  HE    Q    +S                            N D  +SG +   E++                    P  D  +    + +E     +   N       D     F D  VYTRNR FR++GSSK+G+  S  L+VA  N             +    D           L  SLV PA       ET+  V+GEG     +   T          +T G +     G HG           A+    + +  +G SPFP +D  V   L ++ GV+G++R+W   + E   F+N     D       +T+Q+  NRWC NI+R HKSN++   + L      Q C D DCR + +R     +P D+    + +   EA  ++    +A+   P
Sbjct:  251 PSSRHYYELIREETPCRLYFDLEYNKKANPGITNETNEALINEFISELSAEIHSQFNISMKRRHVFDLDSSTDKKFSRHLICHFPNGELFADAVSCGDFVKNFVGQLAEGVATKTLEEKCPTLAKYLFINSKEESSSTLPVVEIGTGTVVEAPITKSGISHEILVSQAPNKESQSKHEISA--------------------NIDVHISGDEPSEESNKELS----------------PSKDERKXXXEDGIEKNHQEETQHNPSRHHAYDQNKTCFVDTGVYTRNRLFRLLGSSKFGKPPSAALRVAAANTFKFSDAALTGSSDSNDIDKLFNWCNRAASLVQSLVTPAV-----NETY--VDGEGELKILKIKITDE--------ATVGNDRVPLTGRHG----------RAKPRGPINTKRYGPSPFPLLDEFVNENLAKRKGVKGAMREWAILSSERDDFDN-----DAT-----ITYQIKGNRWCENIQRCHKSNNVMWSVSLRDMNYWQTCWDPDCRMASFRGLVQEVPYDIKKEIERVSLDEAIRIDGDFEDALASFP 743          
BLAST of mRNA_H-elongata_contig6935.14582.1 vs. uniprot
Match: UPI001402DC1B (DNA-directed primase/polymerase protein isoform X1 n=4 Tax=Amblyraja radiata TaxID=386614 RepID=UPI001402DC1B)

HSP 1 Score: 147 bits (370), Expect = 2.870e-33
Identity = 138/503 (27.44%), Postives = 207/503 (41.15%), Query Frame = 3
Query:  765 LEHVYEIIREGSPCRMYFDLEFARAHNPGLDGECLVQAWINIVAGKIHQDFSITVGSCDFLDLDSSTPKKFSRHLILHLPGDQLFEDNSHVGRFVNTIAADLERWKSTSQPTSSSLLGANKHGASAASTEAGSLHERAARQTSTHDSDDIXXXXXXXXXXXXXXXXXXXXXXXXDNTDALSGAQSLPEASAARPDPCSPWGAVSGDRGGGPGGDVSQGTSREVLETATGGKEV-------LNSLWVCDGDGRSVLFADVSVYTRNRCFRMVGSSKYGRSVTLKVANTNRRTLRHMGFEEGQEIKPGDMARTILHDSLVVPATLRCRSRETFLTVEGEGAHHYSRFGRTQSRRLRGKLGSTSGGNCWGTHGPGDRGEACQREAEVGWRVTSNGFGSSPFPAIDAVLRTLIRQGGVQGSLRQWNYTAYEIAFENGEGRADCVRKARRLTHQVSNNRWCWNIRRAHKSNHIFLVIDLSRGEVRQHCHDQDCRRSGYRSNPFRLPQD 2252
            L H YE+I EG+ C +YFDLEF +  NP  DG+ +V   I  V  K+ + + +       L+LDSST +KFSRHL+ HLP +  F +N HVG F+ TI           QP    L                   E+   +                                 D  +A     +LP  +      C P   V+ ++    G +V++  S + ++ A+  K          +   V D  G   +F D+ VYT+NR FR+ GSSK G++ + ++A  N+ T +        E+        +   SLV  + +R     T LT +               R+ R +L               D   +    +E     T  G+  SP+  ID  +   I +GGVQG+LR+WNY + E                  + + +SNN WC NI RAH+SN+I +V+DL R    Q C+D  CR   +RS    LP +
Sbjct:  101 LMHCYEVIPEGAVCHLYFDLEFVKQTNPERDGKQMVATLIQYVCQKLGELYRVQCSVRHVLNLDSSTHEKFSRHLVFHLP-NVAFRNNIHVGNFIRTIM----------QPVIEIL-------------------EKGRGRI--------------------------------DQENAGGDGGALPPTNTR----CVP---VTPEKRKPLGKEVNRNLSSKKIKCASWEKSEERISDPDFSLFMVKDKYGADQVFVDLGVYTKNRNFRLYGSSKLGKNTSFQIAEDNQFTPKPQDNVSADEL--------LFLSSLV--SNVRFSDGLTILTCDSP-----------DMRKPRERL---------------DPENSNHSVSE-----TMGGYHCSPYLEIDNFIIGQINKGGVQGALRRWNYFSSEEL----------------MVYDISNNHWCENIGRAHRSNNIMIVVDLKREVWYQKCYDPVCRAQRFRSESHPLPHE 477          
BLAST of mRNA_H-elongata_contig6935.14582.1 vs. uniprot
Match: A0A329STK8_9STRA (DNA-directed primase/polymerase protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329STK8_9STRA)

HSP 1 Score: 147 bits (370), Expect = 8.600e-33
Identity = 138/514 (26.85%), Postives = 190/514 (36.96%), Query Frame = 3
Query:  771 HVYEIIREGSPCRMYFDLEFARAHNPGLDGECLVQAWINIVAGKIHQDFSITVGSCDFLDLDSSTPKKFSRHLILHLPGDQLFEDNSHVGRFVNTIAADLERWKSTSQPTSSSLLGANKHGASAASTEAGSLHERAARQTSTHDSDDIXXXXXXXXXXXXXXXXXXXXXXXXDNTDALSGAQSLPEASAARPDPCSPWGAVSGDRGGGPGGDVSQGTSREVLETATGGKEVLNSLWVCDGDGRSVLFADVSVYTRNRCFRMVGSSKYGRSVTLKVANTNRRTLRHMGFEEGQEIKPGDMARTILHDSLVVPATLRCRSRETFLTVEGEGAHHYSRFGRTQSRRLRGKLGSTSGGNCWGTHGPGDRGEACQREAEVGWRVTSNGFGSSPFPAIDAVLRTLIRQGGVQGSLR--QWNYTAYEIAFENGEGRADCVRKAR---------RLTHQVSNNRWCWNIRRAHKSNHIFLVIDLSRGEVRQHCHDQDCRRSGYRSNPFRLPQDVVPSPDDLE 2279
            HVYEIIREG PCR+YFDLEF RA N  ++G+ LV   ++++  ++ + + I V   D   LDSSTP KFSRHLI H PG  LF DN H G FV    +DL                                        + +DSDD                                              P SP+                                ++N+    D   +  LF D  VYTRNR FR+VGSSK+ +   L+  N +   L    F +        +    L         LRC S  T L             GR++     G    TS                C+R               S +PA+DA +R+    GGVQG +R  Q   T+         G+ D   +A           + + ++ NRWC NI R HKSN++  ++D+ +    Q CHD  C+   +RS P  LP  +  S D +E
Sbjct:  331 HVYEIIREGVPCRLYFDLEFKRAINLRVNGDALVARLVSLLQLQLFRRYGIHVHHRDIYQLDSSTPAKFSRHLIFHFPGASLFTDNLHAGAFVREFISDLV-------------------------------------DLNDYDSDD----------------------------------------------PPSPF--------------------------------LVNTESEDDPVDKKQLFIDTGVYTRNRMFRVVGSSKFKKQAVLRSLNASGTELDLDLFMDTMVCPYPSLEAMELLRKTKDCRLLRCESSSTAL-------------GRSRQSTGSGAKSLTSSS------------VECRR---------------SIYPALDAFIRSQATTGGVQGEIRAIQLLMTSNSAVLAVLPGQEDAQDQAEDNAAKPYPWMIIYHMARNRWCANIGRPHKSNNVMFIVDIDQRVFYQKCHDPACQAMDFRSPPQPLPPHIDFSTDAIE 689          
BLAST of mRNA_H-elongata_contig6935.14582.1 vs. uniprot
Match: UPI00201EFC22 (DNA-directed primase/polymerase protein-like n=1 Tax=Haliotis rufescens TaxID=6454 RepID=UPI00201EFC22)

HSP 1 Score: 144 bits (362), Expect = 4.050e-32
Identity = 141/520 (27.12%), Postives = 203/520 (39.04%), Query Frame = 3
Query:  771 HVYEIIREGSPCRMYFDLEFARAHNPGLDGECLVQAWINIVAGKIHQDFSITVGSCDFLDLDSSTPKKFSRHLILHLPGDQLFEDNSHVGRFVNTIAADLERWKSTSQPTSSSLLGANKHGASAASTEAGSLHERAARQTSTHDSDDIXXXXXXXXXXXXXXXXXXXXXXXXDNTDALSGAQSLPEASAARPDPCSPWGAVSGDRGGGPGGDVSQGT----------------------SREVLETATGGKEVLNSLWVCDGDGRSVLFADVSVYTRNRCFRMVGSSKYGRSVTLKVANTNRRTLRHMGFEEGQEIKPGDMAR-TILHDSLVVPATLRCRSRETFLTVEGEGAHHYSRFGRTQSRRLRGKLGSTSGGNCWGTHGPGDRGEACQREAEVGWRVTSNGFGSSPFPAIDAVLRTLIRQGGVQGSLRQWNYTAYEIAFENGEGRADCVRKARRLTHQVSNNRWCWNIRRAHKSNHIFLVIDLSRGEVRQHCHDQDCRRSGYRSNPFRLPQDVVP 2261
            H YE+I EG  C++YFDLEFA+  NP  +G  +V+ +I  V   +   + +     D LDLD+ST KKFSRHL+  L  D +F+DN   G FV+ I   L        P   + +          STE       AA +TS     D+                             + G+ S  E S               DR      DVS                         S ++L   T   E L SL V   D + +LF D+ VYT+NR FR++ S+K G+    +V+  N  T R          KP  M    +  DSL+       R R      + +G    SRF                            R +A ++        T  G+ +SP+P +D  +   +   G  G +R W Y      F  GE           L + ++  RWC NI+R H+SN+I L +D+ +G   Q CHD DC+   ++S    LP +V+P
Sbjct:  115 HHYEVIPEGGVCKLYFDLEFAKEVNPDSNGLQMVEIFIKYVCTWLQHHYRVQCDRQDVLDLDASTEKKFSRHLVFQLQ-DVVFKDNVGAGHFVHHIFNKLLDSVQPCTPGGDNPVKTEPSD----STEIIPPLSSAASETS-----DVSEEKQDAAVSAEVKSEDRNDSGFESPLKEMQGSGSSTEKS---------------DR------DVSSXXXXXXXXXXXXXXXXXXXXXXXXSCDILGQFT--DEELKSLVVMSKDQKPMLFCDMGVYTKNRNFRLLKSTKLGKKNPFRVSAENVYTPRP---------KPDTMEGFNLFSDSLISNVKYTPRLRILTFGSKSQG----SRF----------------------------RHQAIKQHRSHDETETLAGYTTSPYPELDDFICRTVGDSGKNGCIRHWTY------FPQGE----------LLIYDIARYRWCANIQRQHRSNNIMLCVDMKKGVYYQKCHDPDCKADNFKSEDLPLPSEVLP 544          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6935.14582.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LSB0_ECTSI5.620e-13747.10DNA-directed primase/polymerase protein n=1 Tax=Ec... [more]
A0A6H5L6M6_9PHAE1.340e-9841.54DNA-directed primase/polymerase protein n=1 Tax=Ec... [more]
UPI001CF1C6D43.410e-4430.13DNA-directed primase/polymerase protein-like n=1 T... [more]
K3WHZ0_GLOUD2.430e-3829.09DNA-directed primase/polymerase protein n=1 Tax=Gl... [more]
A0A5D6XRH5_9STRA4.680e-3728.40DNA-directed primase/polymerase protein n=1 Tax=Py... [more]
UPI001403BC5D5.310e-3528.30DNA-directed primase/polymerase protein isoform X1... [more]
A0A6S8THK3_9STRA9.040e-3527.30DNA-directed primase/polymerase protein n=1 Tax=Ch... [more]
UPI001402DC1B2.870e-3327.44DNA-directed primase/polymerase protein isoform X1... [more]
A0A329STK8_9STRA8.600e-3326.85DNA-directed primase/polymerase protein n=2 Tax=Ph... [more]
UPI00201EFC224.050e-3227.12DNA-directed primase/polymerase protein-like n=1 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig6935contigH-elongata_contig6935:2519..8604 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score453.8
Seed ortholog evalue1.2e-124
Seed eggNOG ortholog2880.D8LSB0
Preferred namePRIMPOL
GOsGO:0000002,GO:0000731,GO:0003674,GO:0003682,GO:0003824,GO:0003887,GO:0003896,GO:0003899,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005759,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006264,GO:0006269,GO:0006281,GO:0006301,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007005,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009987,GO:0016043,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0019985,GO:0030145,GO:0031297,GO:0031974,GO:0032042,GO:0032774,GO:0033554,GO:0034061,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045005,GO:0046483,GO:0046872,GO:0046914,GO:0050896,GO:0051716,GO:0070013,GO:0071704,GO:0071840,GO:0071897,GO:0090304,GO:0097747,GO:0140097,GO:0140098,GO:1901360,GO:1901362,GO:1901576
EggNOG free text desc.DNA primase activity
EggNOG OGs28JNI@1,2QS1Q@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionDNA primase, UL52/UL70 type, Herpesviridae
Ec32 orthologEc-12_004190.1
Exons11
Model size2769
Cds size1668
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931090.6627648-UTR-H-elongata_contig6935:2518..29411622931090.6627648-UTR-H-elongata_contig6935:2518..2941Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6935 2519..2941 +
1691679693.9130363-UTR-H-elongata_contig6935:2518..29411691679693.9130363-UTR-H-elongata_contig6935:2518..2941Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6935 2519..2941 +
1622931090.686233-UTR-H-elongata_contig6935:3231..33511622931090.686233-UTR-H-elongata_contig6935:3231..3351Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6935 3232..3351 +
1691679693.9269316-UTR-H-elongata_contig6935:3231..33511691679693.9269316-UTR-H-elongata_contig6935:3231..3351Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6935 3232..3351 +
1622931090.7039578-UTR-H-elongata_contig6935:3805..39451622931090.7039578-UTR-H-elongata_contig6935:3805..3945Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6935 3806..3945 +
1691679693.9366927-UTR-H-elongata_contig6935:3805..39451691679693.9366927-UTR-H-elongata_contig6935:3805..3945Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6935 3806..3945 +
1622931090.9012208-UTR-H-elongata_contig6935:8186..86041622931090.9012208-UTR-H-elongata_contig6935:8186..8604Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6935 8187..8604 +
1691679694.0561597-UTR-H-elongata_contig6935:8186..86041691679694.0561597-UTR-H-elongata_contig6935:8186..8604Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6935 8187..8604 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931090.7240741-CDS-H-elongata_contig6935:3945..39961622931090.7240741-CDS-H-elongata_contig6935:3945..3996Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6935 3946..3996 +
1691679693.9500704-CDS-H-elongata_contig6935:3945..39961691679693.9500704-CDS-H-elongata_contig6935:3945..3996Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6935 3946..3996 +
1622931090.738663-CDS-H-elongata_contig6935:4052..42151622931090.738663-CDS-H-elongata_contig6935:4052..4215Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6935 4053..4215 +
1691679693.9629242-CDS-H-elongata_contig6935:4052..42151691679693.9629242-CDS-H-elongata_contig6935:4052..4215Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6935 4053..4215 +
1622931090.7571971-CDS-H-elongata_contig6935:4558..46741622931090.7571971-CDS-H-elongata_contig6935:4558..4674Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6935 4559..4674 +
1691679693.974771-CDS-H-elongata_contig6935:4558..46741691679693.974771-CDS-H-elongata_contig6935:4558..4674Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6935 4559..4674 +
1622931090.7779868-CDS-H-elongata_contig6935:5142..56631622931090.7779868-CDS-H-elongata_contig6935:5142..5663Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6935 5143..5663 +
1691679693.9948084-CDS-H-elongata_contig6935:5142..56631691679693.9948084-CDS-H-elongata_contig6935:5142..5663Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6935 5143..5663 +
1622931090.799027-CDS-H-elongata_contig6935:5921..60691622931090.799027-CDS-H-elongata_contig6935:5921..6069Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6935 5922..6069 +
1691679694.0071728-CDS-H-elongata_contig6935:5921..60691691679694.0071728-CDS-H-elongata_contig6935:5921..6069Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6935 5922..6069 +
1622931090.8200092-CDS-H-elongata_contig6935:6617..68951622931090.8200092-CDS-H-elongata_contig6935:6617..6895Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6935 6618..6895 +
1691679694.0164773-CDS-H-elongata_contig6935:6617..68951691679694.0164773-CDS-H-elongata_contig6935:6617..6895Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6935 6618..6895 +
1622931090.8370173-CDS-H-elongata_contig6935:7218..73481622931090.8370173-CDS-H-elongata_contig6935:7218..7348Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6935 7219..7348 +
1691679694.0260725-CDS-H-elongata_contig6935:7218..73481691679694.0260725-CDS-H-elongata_contig6935:7218..7348Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6935 7219..7348 +
1622931090.858957-CDS-H-elongata_contig6935:7656..77671622931090.858957-CDS-H-elongata_contig6935:7656..7767Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6935 7657..7767 +
1691679694.0355117-CDS-H-elongata_contig6935:7656..77671691679694.0355117-CDS-H-elongata_contig6935:7656..7767Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6935 7657..7767 +
1622931090.881462-CDS-H-elongata_contig6935:8036..81861622931090.881462-CDS-H-elongata_contig6935:8036..8186Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6935 8037..8186 +
1691679694.0446582-CDS-H-elongata_contig6935:8036..81861691679694.0446582-CDS-H-elongata_contig6935:8036..8186Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6935 8037..8186 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig6935.14582.1prot_H-elongata_contig6935.14582.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig6935 3946..8186 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig6935.14582.1

>prot_H-elongata_contig6935.14582.1 ID=prot_H-elongata_contig6935.14582.1|Name=mRNA_H-elongata_contig6935.14582.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=556bp
MTIEIRIINQMILLLWRIKTRTATYPRLEHVYEIIREGSPCRMYFDLEFA
RAHNPGLDGECLVQAWINIVAGKIHQDFSITVGSCDFLDLDSSTPKKFSR
HLILHLPGDQLFEDNSHVGRFVNTIAADLERWKSTSQPTSSSLLGANKHG
ASAASTEAGSLHERAARQTSTHDSDDIVSDDALAQIETASPSVVTPSVVT
PDNTDALSGAQSLPEASAARPDPCSPWGAVSGDRGGGPGGDVSQGTSREV
LETATGGKEVLNSLWVCDGDGRSVLFADVSVYTRNRCFRMVGSSKYGRSV
TLKVANTNRRTLRHMGFEEGQEIKPGDMARTILHDSLVVPATLRCRSRET
FLTVEGEGAHHYSRFGRTQSRRLRGKLGSTSGGNCWGTHGPGDRGEACQR
EAEVGWRVTSNGFGSSPFPAIDAVLRTLIRQGGVQGSLRQWNYTAYEIAF
ENGEGRADCVRKARRLTHQVSNNRWCWNIRRAHKSNHIFLVIDLSRGEVR
QHCHDQDCRRSGYRSNPFRLPQDVVPSPDDLEAYELELGLSEAMRDSPAD
WAALS*
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mRNA from alignment at H-elongata_contig6935:2519..8604+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig6935.14582.1 ID=mRNA_H-elongata_contig6935.14582.1|Name=mRNA_H-elongata_contig6935.14582.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=6086bp|location=Sequence derived from alignment at H-elongata_contig6935:2519..8604+ (Himanthalia elongata Himel1 dioecious)
TGTCCGTCACGCGTCAAAAAGAGGGCCTGTATTTTTGCACCTCGACGCGG TGAGCGACGATGATGGCGCAAGAGACGAGGTCAAACCGGGGGGCCGGTAT GGCCAGCGTGTTAATGCTGGAGCATCAGGCCGTGCGGAAGCTCGACTGTG CACAGATAAGCGTCCAGTGGAAGACATGTGCGCAGGACACGTAAACTTGA GCGGCCGCGTTGAGTTGTCACCGCTCCAGTCGGCGCCGGCACGGCGACGG AGAAAGGCAAGCAAGGCGGAACGTGCCTGGTTGAACCTGCAAAAGGCCTT GCACGAGCGCTACAGAAACTTCGAGGAAACTCAGGCGGCAGAACAGATTG CCGCTGAGGCTGATGGCGGATCGGTATCCAACGGGTCGGGTTGGGGTGGA AAAGTGCTGACTCCCGGGCTTTGGTGAGGCATCGCAGCGATGTGTTTCGC TCGATGTGGTCCTTCTAGTCAGTCACAGGACGGCGAGAGGGTGTCAAGTT GTCTTACATGTCCGTGAAATAGTATCCCGGCGTTTTGCGAAGAAAATTAC TGAAATCGCATAACGGTTGAGGCTTGGGTGCTCCCACTGGTTGTTGCACT TTTGCATGAAATGACAAGGATAAAAAGTAGACGAGTTCAGCACGTCTCTT GACCTCCTGGCGCATGGTGTATACTATTTGCCGCGTGAATTGACCTCCTG TGCGCGTGAGTAGGATATTTCCTCGACAAGAATATGCATTCGCCTTTGCC GATATGGTGGCAAAAAGACTCTCGCCCGAGGACGCTGCTCGGTACAAGGT CCTATCTTTCGAGACAAACTCGGCTGGGAAAAGGTCAGTTCCGCCACCTT TCTCGGCTTTGTGGAGGAAGCTTACGAATCGGTTGGTGCTCATTTCGTTT TCCGGAAATTGTGAAGTCCCGGGCAAGAAGAAGTCGGTCGCTCACGAACA AAATATTCCAAGCAGTGCAACTCTCAAAAAGACTGCGCAACAGCGCTTTC TTCGCTTTGAGCGTCCATTACCGAATATCATGGCGCGGTGGTCTTCGATC GGCACGATATCTTGAGCCAAAATCAATCAGTATCACGTAGATTTGTTCTC GTAAGCGCACACGCAGCGTCAATATCGTATAGACCCTTGGGCGGTATCGA ACTTCTAGGGGTACCGAACGTTTTCTTCTTAGGCGTGAAAGTGCTGCCCC GAAGCCGATGCGCACGCATCTTTCAGGACCCTTTTTCTCGCCATTGTCGC TGTCGCTGTTGCACTTTGTCATTGCTATCTCTCTCAGGAGATTCCTCGTG TGCGACATGACACGCTTCGAAGAGCATTACCCTTACACGGCCAAGCCTGA CAGCGACTTATTGCAGCGAGCAGCGAGCTTGCCACAGCCGTCACCATCGC AACACCATATTTCCGAAGCAGCAAGCGATGACTATCGAAATAAGGATAAT AAATCAGATGATCTTGTTACTTTGGAGGGTACAGGAACGCAATCCGTGCC TTCTGCATCAGGAAATCCAGCCCCCCCTTCGGAGATCAAGACACGGACGG CGACTTACCCTCGGTTGGAACATGTCTACGAGATTATCAGGGAAGGTTCT CCTTGCCGCATGTACTTCGACCTGGAATTCGCGCGCGCACACAACCCGGG GCTAGACGGAGAATGTCTCGTACAGGCTTGGATCAACATTGTTGCTGGTG AGAATGAAAACATTGGAAGGCCGCAAAGCTCTTCTCTCTCCGAACGGGCA CCCTCGTTGAAGCAGGGCATGGTCATAGAGTTGTCATCGCCTCGGCCAAG TGCGGGGCACGATGATTGATGGCATGATATTCGTCGGCCGACAGAACCTT GGATCTCCTCTTCCGAGTTCTCAGCCTGGTCTTCCTGGATTGAGAGCGCT TGCGAACGATATTCTTGTGGCTCTAACTGTCGGAACAAGAATTGCCCGAC CGCGTCGAGTGAAAGCGATTTCCTCGTACAGTGTGACGACTAATAGCTTA TATTTTCTCTTGCCCACGCTGATCTGTTCGGGCGCCCCAGGGAAAATTCA TCAAGACTTTAGCATTACGGTGGGAAGTTGCGACTTTCTCGACTTGGATT CTTCGACTCCGAAGAAGTTCAGCCGTCATTTGATTCTTCACCTGCCAGGG GACCAGGTCCCTTTTAGTTTCTGCGCTTGATGATGTCATTTCTCGCTTAT CTTGCCGCGGGGTTGTCATTGATAAGGAAGCTGGTAGTATACGAGACCCA TTGTTTGAATGTATGTTTTTTTTAATATATATATATATTACAGATAGCTA TATCAAGATGGGAAAACGGCGAACGAAACCGCGTTAACCGTTTTGGAGTA CTTTTTCTCGCCTTATATTGAGGGCGCAATAGTACGCCAGCAATGCTCCG ATTGCTCTGTAATCAGCTGGGCACGGCTCGGATGGTTGGGCTCGAGTTTG GACGTCCACGATTTCACTCGCATTATCGACAGCGTGAACTTTGCATTGAG AGAGAGAGAGTGGAGGGCGCGCGTGTGTGGACTATGCCATCACTTTGCCA CCCGCTTCCCCTCGTTCGCTTGCTGTCCTGGCCCTTTAACCCACCATCGT CTCTTTTGCGTTTTGCCGTTGCAGCTTTTTGAGGACAATTCGCACGTTGG TCGTTTCGTCAATACAATCGCCGCCGACCTCGAGCGGTGGAAATCTACTT CACAGCCGACGTCATCTTCGTTGTTGGGCGCGAACAAACACGGCGCGTCC GCTGCGTCGACGGAAGCTGGTTCTCTACACGAACGTGCCGCCAGACAAAC ATCAACCCACGATAGTGATGATATCGTGTCTGATGACGCGCTGGCGCAAA TCGAAACGGCTTCGCCATCAGTAGTGACGCCATCAGTAGTCACACCCGAC AACACTGACGCTTTGAGCGGAGCACAATCTTTACCCGAGGCATCCGCCGC GAGGCCCGATCCTTGCTCGCCCTGGGGTGCCGTGAGCGGTGATCGCGGTG GAGGACCCGGAGGCGATGTAAGTCAAGGGACTTCACGAGAAGTGCTAGAG ACCGCCACGGGAGGAAAGGAGGTGCTCAATAGTCTGTGGGTGTGCGATGG AGATGGGCGGAGCGTTCTTTTTGCCGACGTCAGCGTGTACACGAGGTGAA ATATGTGGCGAGGTTTTGTACAGACTCCCGCCGCGAATCTATAGCTACTA TACTGTACTGTACTATATTATGATGTATTTTGGGCACCAGAAACGGCCTA ATAATCTGGCAGACCATGATGATTTCTCTTACTTCGTCCGGACAGTGACC CGGTTTGTCAGATATAACGGTCGTCAGGTGGTAAGGCTACCGGTTGCATA TTTGTTTCCGTGCCCAACCCTCTCCCCGCGTCTGTTTTCTATTCGTTGGA AAGGAATCGATGCTTCCGCATGGTTGGTTCGAGCAAGTACGGCAGATCGG TGACCCTGAAGGTGGCGAACACGAATCGAAGGACTCTGAGGCACATGGGA TTCGAGGAGGGTCAGGAGATAAAACCAGGCGATATGGCGCGAACGATCCT GGTAAGTTAGAGGTTGCCGGGAGCGGTCGGTATTCTTCCTTAACCCTTTT AGAACGGGATTTCAAGTTTTATTATACATTTAGAATGTAAAAAACAGATC GAGTTCTCTAGGGGTTAAATTACCACGCGCAATCGTTTCATGTTGCCTCC CCCCCGCTGTCCATGAGCTTTTGACGTTAAGCATGTCGTTAGGTCAGCAG ATCGAAACGTAAGATGACTATCTTCCTCTTTTTCGCGGCGTGGACAAAGT CTCGTTTCACCTGCTGCGTGAAAAATTTGCGTTTCGAATGGTGATGAAAA GCGTTTTGTAGTGTATCTGTGTGTGTTCGTCAGCCAAACAGCTCTGGGCT CAAAATCATTTTTGTTCCCTCAGTTAGGATTGCAAAATGTTTTATGTCTT TCACCGCGAGCATTTGCGACTCGAGAATGACTCGCCATGCGCTCGAGACA ACGGTCCGTTCTTTCTATGCCGAAACTTATATAGAAGTAAAGTCAAACGA AAGCTCATCGCAGGCGATGCACTTTTGTCTTGCCCTCCTCCCTCAACAGC ATGACTCTCTGGTGGTCCCCGCCACCCTGCGGTGCAGATCACGCGAGACT TTCCTCACCGTCGAAGGGGAAGGCGCGCACCACTATTCTAGGTTTGGAAG GACGCAAAGTCGACGACTAAGAGGGAAATTGGGTTCGACATCCGGAGGAA ACTGTTGGGGAACACACGGCCCTGGCGATCGTGGCGAGGCCTGTCAAAGG GAAGCGGAGGTCGGGTGGCGGGTGACGAGCAATGGGTTCGGGTCGTCGCC GTTTCCGGCAATCGATGCCGTCTTACGGTAAGCCTCGCTTTTCAGACGCG TTTGAAGTTTACGTCGAATGCTACTTCAACACTTGTCTGCGTCGATGCCC CGGTACTTGGATCACTGCTTCGCGGGTGGTCAATGCGCGTGGTGTTTTGG ATGCTTTTCCAGTAAGCAAGGGTGGGCAGATGCTTCCTGGGCGGTTTCGA GGATGGCGGTGAGCAAGCGGTTCGAGGGTCCACTTTTGAAGCTCTTCTCT TTGGAACTTCTCCTTGAGAGAGAGAGAGTGCGCTTTGACGAGGAAAAAGT GGCAGTGTCAATGCGTGATGGTGGTGGTCTGCGCCGTTTTTTTCCTTCAG GACTTTGATTCGGCAAGGAGGTGTTCAAGGAAGCCTACGCCAGTGGAATT ACACGGCCTACGAAATCGCATTCGAGAATGGCGAAGGTCGAGCAGACTGC GTCCGCAAAGCTCGGAGGCTAACGCACCAGGTAAAGAAGAAATCGCAACA GAATCATCGTTGGGCTGGGATTTGGAACTGGCGTTGACTTAAGCCCTCCT GGAAGGTTTGTTCCGATGCGCCAGCATGCATCCACTTAAATTGAATACAC AGAAAGGCGCGGCGGTTTGTTGCGTTCGCTGCGGCTGGATTCATCTCTAA ATAGGCACGCGCAACCGTTGAGATGCCGGGGTCGTGAAACACGAGCTCGA GCCCCCATTTGTTCGTTCATGAGCGAGTTTCTTCGGTCTTCCGTGCACGT ACACATGCATCGCGGTCGTCGTTTTGTTTGGCCGGCAGGTCTCCAACAAT CGCTGGTGCTGGAACATCAGGCGCGCGCACAAGTCCAATCACATTTTCCT GGTAATAGACCTCTCCAGGGGCGAGGTCCGTCAGCACTGTCATGATCAGG TGAAAGGGGTTTGTACTTAACGTTGTCAGATTATTTATTTTACAGTCAAA GTTGGTCCCCCTGGACTTCACCTCTCATTGTGCAGAGAAGGTGTGGATGT TCGGAGAGCTTGAATAAGTTAATACATACGGTATTTTACAAGAAACATTT AACATTGTTTTCTTCCTCGTTTTCTCTCAAGCATATTGACCGTAACCGCC CGTTGAGCACTCTTAAAGAGACGCGAGAATTTGTCGTTCATCTACACTTC TGCCCTCCGCGCTTGCAGGATTGTCGGCGATCAGGATACCGGTCGAACCC TTTCCGGCTGCCGCAAGATGTGGTGCCATCCCCGGATGACCTTGAAGCCT ACGAGCTGGAGCTTGGCTTGTCGGAGGCCATGCGAGATTCTCCGGCAGAC TGGGCAGCACTTTCGTAAAAGCCTTACATCGCACATATATCAGCCGTGTT GTTCTCGCTAGACAAGACCTCTGTCTTAAGCCCTGATATTTAATAGGCTG AAGCCAACCTGTTCGGTTTGAGGCTCTTGGTTAAATGTGACCAGTAGTAG CACCGCCTTTTGTCACAGATATGGTGTAGGCATCCATGTGGAGCAAGTGA TGACTGGTTTGCACCACCAGGCCTTCGAGGTGGACACAACAAGCGCATGT ACTAGGCGAAATAGAGAGGGGTGAAGTGCGCCGTGCTTTTTTAGACCCTT GTTCTTTCCTGCATTGTTCGCGCGCGGCTGGAACTTTCCATCGACGCGAC ATGATAGCGTTGTACTGCAACGCATGCGACCGCTAGTATATCGATCAAGC TCAATCAAACGCTTTTTTTAGGTAGGCGTGATGACG
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Coding sequence (CDS) from alignment at H-elongata_contig6935:2519..8604+

>mRNA_H-elongata_contig6935.14582.1 ID=mRNA_H-elongata_contig6935.14582.1|Name=mRNA_H-elongata_contig6935.14582.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=3336bp|location=Sequence derived from alignment at H-elongata_contig6935:2519..8604+ (Himanthalia elongata Himel1 dioecious)
ATGACTATCGAAATAAGGATAATAAATCAGATGATCTTGTTACTTTGGAG
GATGACTATCGAAATAAGGATAATAAATCAGATGATCTTGTTACTTTGGA
GGATCAAGACACGGACGGCGACTTACCCTCGGTTGGAACATGTCTACGAG
ATTATCAGGGAAGGTTCTCCTTGCCGCATGTACTTCGACCTGGAATTCGC
GCGCGCACACAACCCGGGGCTAGACGGAGAATGTCTCGTACAGGCTTGGA
TCAACATTGTTGCTGATCAAGACACGGACGGCGACTTACCCTCGGTTGGA
ACATGTCTACGAGATTATCAGGGAAGGTTCTCCTTGCCGCATGTACTTCG
ACCTGGAATTCGCGCGCGCACACAACCCGGGGCTAGACGGAGAATGTCTC
GTACAGGCTTGGATCAACATTGTTGCTGGGAAAATTCATCAAGACTTTAG
CATTACGGTGGGAAGTTGCGACTTTCTCGACTTGGATTCTTCGACTCCGA
AGAAGTTCAGCCGTCATTTGATTCTTCACCTGCCAGGGGACCAGGGAAAA
TTCATCAAGACTTTAGCATTACGGTGGGAAGTTGCGACTTTCTCGACTTG
GATTCTTCGACTCCGAAGAAGTTCAGCCGTCATTTGATTCTTCACCTGCC
AGGGGACCAGCTTTTTGAGGACAATTCGCACGTTGGTCGTTTCGTCAATA
CAATCGCCGCCGACCTCGAGCGGTGGAAATCTACTTCACAGCCGACGTCA
TCTTCGTTGTTGGGCGCGAACAAACACGGCGCGTCCGCTGCGTCGACGGA
AGCTGGTTCTCTACACGAACGTGCCGCCAGACAAACATCAACCCACGATA
GTGATGATATCGTGTCTGATGACGCGCTGGCGCAAATCGAAACGGCTTCG
CCATCAGTAGTGACGCCATCAGTAGTCACACCCGACAACACTGACGCTTT
GAGCGGAGCACAATCTTTACCCGAGGCATCCGCCGCGAGGCCCGATCCTT
GCTCGCCCTGGGGTGCCGTGAGCGGTGATCGCGGTGGAGGACCCGGAGGC
GATGTAAGTCAAGGGACTTCACGAGAAGTGCTAGAGACCGCCACGGGAGG
AAAGGAGGTGCTCAATAGTCTGTGGGTGTGCGATGGAGATGGGCGGAGCG
TTCTTTTTGCCGACGTCAGCGTGTACACGAGCTTTTTGAGGACAATTCGC
ACGTTGGTCGTTTCGTCAATACAATCGCCGCCGACCTCGAGCGGTGGAAA
TCTACTTCACAGCCGACGTCATCTTCGTTGTTGGGCGCGAACAAACACGG
CGCGTCCGCTGCGTCGACGGAAGCTGGTTCTCTACACGAACGTGCCGCCA
GACAAACATCAACCCACGATAGTGATGATATCGTGTCTGATGACGCGCTG
GCGCAAATCGAAACGGCTTCGCCATCAGTAGTGACGCCATCAGTAGTCAC
ACCCGACAACACTGACGCTTTGAGCGGAGCACAATCTTTACCCGAGGCAT
CCGCCGCGAGGCCCGATCCTTGCTCGCCCTGGGGTGCCGTGAGCGGTGAT
CGCGGTGGAGGACCCGGAGGCGATGTAAGTCAAGGGACTTCACGAGAAGT
GCTAGAGACCGCCACGGGAGGAAAGGAGGTGCTCAATAGTCTGTGGGTGT
GCGATGGAGATGGGCGGAGCGTTCTTTTTGCCGACGTCAGCGTGTACACG
AGGAATCGATGCTTCCGCATGGTTGGTTCGAGCAAGTACGGCAGATCGGT
GACCCTGAAGGTGGCGAACACGAATCGAAGGACTCTGAGGCACATGGGAT
TCGAGGAGGGTCAGGAGATAAAACCAGGCGATATGGCGCGAACGATCCTG
GAATCGATGCTTCCGCATGGTTGGTTCGAGCAAGTACGGCAGATCGGTGA
CCCTGAAGGTGGCGAACACGAATCGAAGGACTCTGAGGCACATGGGATTC
GAGGAGGGTCAGGAGATAAAACCAGGCGATATGGCGCGAACGATCCTGCA
TGACTCTCTGGTGGTCCCCGCCACCCTGCGGTGCAGATCACGCGAGACTT
TCCTCACCGTCGAAGGGGAAGGCGCGCACCACTATTCTAGGTTTGGAAGG
ACGCAAAGTCGACGACTAAGAGGGAAATTGGGTTCGACATCCGGAGGAAA
CTGTTGGGGAACACACGGCCCTGGCGATCGTGGCGAGGCCTGTCAAAGGG
AAGCGGAGGTCGGGTGGCGGGTGACGAGCAATGGGTTCGGGTCGTCGCCG
TTTCCGGCAATCGATGCCGTCTTACGCATGACTCTCTGGTGGTCCCCGCC
ACCCTGCGGTGCAGATCACGCGAGACTTTCCTCACCGTCGAAGGGGAAGG
CGCGCACCACTATTCTAGGTTTGGAAGGACGCAAAGTCGACGACTAAGAG
GGAAATTGGGTTCGACATCCGGAGGAAACTGTTGGGGAACACACGGCCCT
GGCGATCGTGGCGAGGCCTGTCAAAGGGAAGCGGAGGTCGGGTGGCGGGT
GACGAGCAATGGGTTCGGGTCGTCGCCGTTTCCGGCAATCGATGCCGTCT
TACGGACTTTGATTCGGCAAGGAGGTGTTCAAGGAAGCCTACGCCAGTGG
AATTACACGGCCTACGAAATCGCATTCGAGAATGGCGAAGGTCGAGCAGA
CTGCGTCCGCAAAGCTCGGAGGCTAACGCACCAGGACTTTGATTCGGCAA
GGAGGTGTTCAAGGAAGCCTACGCCAGTGGAATTACACGGCCTACGAAAT
CGCATTCGAGAATGGCGAAGGTCGAGCAGACTGCGTCCGCAAAGCTCGGA
GGCTAACGCACCAGGTCTCCAACAATCGCTGGTGCTGGAACATCAGGCGC
GCGCACAAGTCCAATCACATTTTCCTGGTAATAGACCTCTCCAGGGGCGA
GGTCCGTCAGCACTGTCATGATCAGGTCTCCAACAATCGCTGGTGCTGGA
ACATCAGGCGCGCGCACAAGTCCAATCACATTTTCCTGGTAATAGACCTC
TCCAGGGGCGAGGTCCGTCAGCACTGTCATGATCAGGATTGTCGGCGATC
AGGATACCGGTCGAACCCTTTCCGGCTGCCGCAAGATGTGGTGCCATCCC
CGGATGACCTTGAAGCCTACGAGCTGGAGCTTGGCTTGTCGGAGGCCATG
CGAGATTCTCCGGCAGACTGGGCAGCACTTTCGTAAGATTGTCGGCGATC
AGGATACCGGTCGAACCCTTTCCGGCTGCCGCAAGATGTGGTGCCATCCC
CGGATGACCTTGAAGCCTACGAGCTGGAGCTTGGCTTGTCGGAGGCCATG
CGAGATTCTCCGGCAGACTGGGCAGCACTTTCGTAA
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