mRNA_H-elongata_contig69340.14581.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig69340.14581.1
Unique NamemRNA_H-elongata_contig69340.14581.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig69340.14581.1 vs. uniprot
Match: D7FIL8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIL8_ECTSI)

HSP 1 Score: 99.0 bits (245), Expect = 2.890e-21
Identity = 47/82 (57.32%), Postives = 56/82 (68.29%), Query Frame = 1 
Query:  208 LWTAFVKSRSAEDACLGQGPLKKWQAFLEGNSIPDDFRSWYSTQVLGNRSVPQALNVSGLPSGFPEFCHWVSEGHHTSSGKK 453
            LWTAF KSR   +  LG   LKKWQ+F +   +   F  WYS QVLG+RSVPQAL +  LP+GFPEFCHWV+  +HTS G K
Sbjct:  125 LWTAFAKSREGAER-LGFTALKKWQSFAK--DMLKGFPDWYSDQVLGSRSVPQALMIEELPNGFPEFCHWVAAENHTSCGVK 203
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig69340.14581.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FIL8_ECTSI2.890e-2157.32Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig69340contigH-elongata_contig69340:47..970 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-27_000230.1
Exons2
Model size453
Cds size438
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig69340.14581.1prot_H-elongata_contig69340.14581.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig69340 47..955 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931090.584527-CDS-H-elongata_contig69340:46..1601622931090.584527-CDS-H-elongata_contig69340:46..160Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69340 47..160 -
1691679693.8875988-CDS-H-elongata_contig69340:46..1601691679693.8875988-CDS-H-elongata_contig69340:46..160Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69340 47..160 -
1622931090.5986714-CDS-H-elongata_contig69340:631..9551622931090.5986714-CDS-H-elongata_contig69340:631..955Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69340 632..955 -
1691679693.895653-CDS-H-elongata_contig69340:631..9551691679693.895653-CDS-H-elongata_contig69340:631..955Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69340 632..955 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931090.6157193-UTR-H-elongata_contig69340:955..9701622931090.6157193-UTR-H-elongata_contig69340:955..970Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig69340 956..970 -
1691679693.9038298-UTR-H-elongata_contig69340:955..9701691679693.9038298-UTR-H-elongata_contig69340:955..970Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig69340 956..970 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig69340.14581.1

>prot_H-elongata_contig69340.14581.1 ID=prot_H-elongata_contig69340.14581.1|Name=mRNA_H-elongata_contig69340.14581.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=146bp
MEDSNDTPPPPMRDSSGSESNSPSTDATRAGGVKGAFGKSVKHRAAAESA
SPAAAAFPFDEPPRLWTAFVKSRSAEDACLGQGPLKKWQAFLEGNSIPDD
FRSWYSTQVLGNRSVPQALNVSGLPSGFPEFCHWVSEGHHTSSGKK
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mRNA from alignment at H-elongata_contig69340:47..970-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig69340.14581.1 ID=mRNA_H-elongata_contig69340.14581.1|Name=mRNA_H-elongata_contig69340.14581.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=924bp|location=Sequence derived from alignment at H-elongata_contig69340:47..970- (Himanthalia elongata Himel1 dioecious)
GACGAAGAGGAGGTGATGGAGGACAGCAACGACACCCCGCCGCCGCCCAT
GCGTGACTCGTCGGGATCCGAATCGAACTCGCCGTCAACTGATGCAACGA
GGGCTGGTGGTGTCAAGGGGGCGTTCGGCAAGAGCGTGAAGCATCGCGCA
GCGGCCGAGTCGGCCTCCCCGGCCGCGGCGGCGTTTCCCTTCGACGAGCC
GCCGCGCCTTTGGACGGCGTTTGTCAAGTCGAGATCCGCGGAGGACGCAT
GTCTCGGACAGGGCCCGCTGAAGAAGTGGCAGGCGTTCCTCGAGGGGAAC
TCAATCCCTGACGATTTTCGGTCGTGGTATTCCACTCAGGTCTGGTGGTC
TGGTGGGGGGGGGATGGTTGGGGCGGGGTGGTATATCTTGTTGTTTGTGT
GTTAATTTAATTTATTTTTTTCTTGTTAGCTGTTGTCAGATTTTATTGCT
AGGAAGGCGGTGAGAGGCCCCAAAAAAGCGCGAGGTGCGCTGCAAGTATG
TTATGTATTGTGGTAGGGCTGCGTACGTGAGAAAATATCACTTCATTTTG
CGATCTATTTTTTAAACAAGTAATTTGCTTGTGTTGGTGTGTGTGTGTAT
TTATTAAATTGTACATAACCGCTAAAACAATGCGGTCCTGTCATACAAGT
TGTTCTAATATACTACTCTCGCATTGATCCCCCCAATGTGTGTGTATCCA
TATCTCTCTGTGTGTATGCTTTTTCTGTATCTCGATCGTCTTCCCTTCCC
TTCCCTGGCCTGACCTCCCCTGACCTGACCTGACCTGACCTGACCTACCA
TATTTTGAAGGTGCTGGGCAACCGGTCCGTGCCTCAGGCGCTCAACGTGT
CGGGGCTTCCTAGCGGCTTCCCGGAATTTTGTCACTGGGTGTCTGAGGGC
CACCACACGTCGTCCGGTAAAAAA
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Coding sequence (CDS) from alignment at H-elongata_contig69340:47..970-

>mRNA_H-elongata_contig69340.14581.1 ID=mRNA_H-elongata_contig69340.14581.1|Name=mRNA_H-elongata_contig69340.14581.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=876bp|location=Sequence derived from alignment at H-elongata_contig69340:47..970- (Himanthalia elongata Himel1 dioecious)
ATGGAGGACAGCAACGACACCCCGCCGCCGCCCATGCGTGACTCGTCGGG
ATCCGAATCGAACTCGCCGTCAACTGATGCAACGAGGGCTGGTGGTGTCA
AGGGGGCGTTCGGCAAGAGCGTGAAGCATCGCGCAGCGGCCGAGTCGGCC
TCCCCGGCCGCGGCGGCGTTTCCCTTCGACGAGCCGCCGCGCCTTTGGAC
GGCGTTTGTCAAGTCGAGATCCGCGGAGGACGCATGTCTCGGACAGGGCC
CGCTGAAGAAGTGGCAGGCGTTCCTCGAGGGGAACTCAATCCCTGACGAT
TTTCGGTCGTGGTATTCCACTCAGATGGAGGACAGCAACGACACCCCGCC
GCCGCCCATGCGTGACTCGTCGGGATCCGAATCGAACTCGCCGTCAACTG
ATGCAACGAGGGCTGGTGGTGTCAAGGGGGCGTTCGGCAAGAGCGTGAAG
CATCGCGCAGCGGCCGAGTCGGCCTCCCCGGCCGCGGCGGCGTTTCCCTT
CGACGAGCCGCCGCGCCTTTGGACGGCGTTTGTCAAGTCGAGATCCGCGG
AGGACGCATGTCTCGGACAGGGCCCGCTGAAGAAGTGGCAGGCGTTCCTC
GAGGGGAACTCAATCCCTGACGATTTTCGGTCGTGGTATTCCACTCAGGT
GCTGGGCAACCGGTCCGTGCCTCAGGCGCTCAACGTGTCGGGGCTTCCTA
GCGGCTTCCCGGAATTTTGTCACTGGGTGTCTGAGGGCCACCACACGTCG
TCCGGTAAAAAAGTGCTGGGCAACCGGTCCGTGCCTCAGGCGCTCAACGT
GTCGGGGCTTCCTAGCGGCTTCCCGGAATTTTGTCACTGGGTGTCTGAGG
GCCACCACACGTCGTCCGGTAAAAAA
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