mRNA_H-elongata_contig69336.14580.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig69336.14580.1
Unique NamemRNA_H-elongata_contig69336.14580.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig69336.14580.1 vs. uniprot
Match: A0A6H5KAK3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAK3_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 9.520e-8
Identity = 29/69 (42.03%), Postives = 39/69 (56.52%), Query Frame = 1 
Query:    7 VAASLADDVDIVGAGINHNFILQRD*SFDMF*IMIRDVTKDYHKRDDMCRRTGSQDQWWRFCRSNIDTY 213
            V   L DD  I  A I+ N + Q D S+D F  M+++V KDY       +  GS D+W+ FCR N+DTY
Sbjct:  378 VVTHLNDDEHITAAQIDPNIVHQPDISYDTFMNMVKEVNKDYGDCHHNLK-CGSHDEWYSFCRENLDTY 445
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig69336.14580.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KAK3_9PHAE9.520e-842.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig69336contigH-elongata_contig69336:2408..3181 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size220
Cds size111
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig69336.14580.1prot_H-elongata_contig69336.14580.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig69336 2513..3177 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931090.471984-UTR-H-elongata_contig69336:2407..25121622931090.471984-UTR-H-elongata_contig69336:2407..2512Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig69336 2408..2512 +
1691679693.8449514-UTR-H-elongata_contig69336:2407..25121691679693.8449514-UTR-H-elongata_contig69336:2407..2512Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig69336 2408..2512 +
1622931090.531546-UTR-H-elongata_contig69336:3177..31811622931090.531546-UTR-H-elongata_contig69336:3177..3181Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig69336 3178..3181 +
1691679693.8764539-UTR-H-elongata_contig69336:3177..31811691679693.8764539-UTR-H-elongata_contig69336:3177..3181Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig69336 3178..3181 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931090.4908116-CDS-H-elongata_contig69336:2512..26031622931090.4908116-CDS-H-elongata_contig69336:2512..2603Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69336 2513..2603 +
1691679693.8549929-CDS-H-elongata_contig69336:2512..26031691679693.8549929-CDS-H-elongata_contig69336:2512..2603Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69336 2513..2603 +
1622931090.5117857-CDS-H-elongata_contig69336:3157..31771622931090.5117857-CDS-H-elongata_contig69336:3157..3177Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69336 3158..3177 +
1691679693.8655667-CDS-H-elongata_contig69336:3157..31771691679693.8655667-CDS-H-elongata_contig69336:3157..3177Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69336 3158..3177 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig69336.14580.1

>prot_H-elongata_contig69336.14580.1 ID=prot_H-elongata_contig69336.14580.1|Name=mRNA_H-elongata_contig69336.14580.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=37bp
MIRDVTKDYHKRDDMCRRTGSQDQWWRFCRSNIDTY*
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mRNA from alignment at H-elongata_contig69336:2408..3181+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig69336.14580.1 ID=mRNA_H-elongata_contig69336.14580.1|Name=mRNA_H-elongata_contig69336.14580.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=774bp|location=Sequence derived from alignment at H-elongata_contig69336:2408..3181+ (Himanthalia elongata Himel1 dioecious)
GTATAGGTGGCCGCGAGTCTTGCAGACGACGTGGACATCGTTGGTGCGGG
CATCAACCACAACTTCATCCTACAGCGTGACTGATCATTCGATATGTTCT
GAATCATGATCCGTGACGTGACGAAGGACTACCACAAACGAGATGATATG
TGCAGGCGAACCGGCAGTCAAGATCAATGGTGGCGTTTCTGCAGAAGTGA
GTGGCGTTATATATTATATATATTTTGATACTTTACCTAAGTTCTGCGGG
TGGTCCATTTGATTGTAGCGTCGAGTTGCAACTGTAGGGTAGGGGCAAAC
TTCTCTTGTGGCTTTGTAGTCGTTAGCGATGGAGTTTAGAGAATCAACCA
CACAAAAGGTGCGGAATAGCACCCTGAAAAACTTTGTAGATTATAGAGTA
AAATTTTGTTCCTTAATGTAGTTAATGTCCACACTCGAACCTGACGATAG
TTGGTCCCCTGGACTACATCTCTCATGGTTTTAAGAAGGCGTGGATGTTC
GGAGGGCATATATATATATATTATATATTTATAAAAACAACTAATATTAT
TACAACTATTATAAGTTTCGTTTGGTCATAATATAGTCGTAAGAGTTCAA
TAGTGTCGTTTTATTCCCGCACCCGGATCGCTTTGAAAAATACCTATTTT
GTTACCGGTGAGCCATGATTCATTTTCAAGATAGACCGTCCTCCCACTTC
CTGACCGTTGCACCCTTGTACAACGTCGTCCGCGATATCATCATCATCAG
GCAACATCGACACGTATTAATCCG
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Coding sequence (CDS) from alignment at H-elongata_contig69336:2408..3181+

>mRNA_H-elongata_contig69336.14580.1 ID=mRNA_H-elongata_contig69336.14580.1|Name=mRNA_H-elongata_contig69336.14580.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=222bp|location=Sequence derived from alignment at H-elongata_contig69336:2408..3181+ (Himanthalia elongata Himel1 dioecious)
ATGATCCGTGACGTGACGAAGGACTACCACAAACGAGATGATATGTGCAG
GCGAACCGGCAGTCAAGATCAATGGTGGCGTTTCTGCAGAAATGATCCGT
GACGTGACGAAGGACTACCACAAACGAGATGATATGTGCAGGCGAACCGG
CAGTCAAGATCAATGGTGGCGTTTCTGCAGAAGCAACATCGACACGTATT
AAGCAACATCGACACGTATTAA
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