mRNA_H-elongata_contig69304.14578.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig69304.14578.1
Unique NamemRNA_H-elongata_contig69304.14578.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig69304.14578.1 vs. uniprot
Match: D7FR41_ECTSI (Voltage-gated Ion Channel (VIC) Superfamily n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR41_ECTSI)

HSP 1 Score: 155 bits (391), Expect = 1.390e-41
Identity = 71/108 (65.74%), Postives = 85/108 (78.70%), Query Frame = 1 
Query:    1 AAMYNNDALGGRESAACAHDKNSVNALKLVRNKAWNQVLNVCTIFHLALPILEIQRCLPCFGPQKLQTPSGLDSVLVGWRPTPLGSMWLECFLCFLYMYDLYQVYVSR 324
            A++Y  DAL GRES  C HD+NS+ ALKLVRNKAWNQ+LN+CTI HL LPI+EIQRCLPC G QK+      +S+  GWRPT LGSMWLEC LC LY+YDLY+V ++R
Sbjct:   77 ASIYVKDALAGRESPTCIHDQNSLRALKLVRNKAWNQLLNICTIAHLMLPIVEIQRCLPCMGMQKIPESLDSNSLHTGWRPTLLGSMWLECLLCLLYVYDLYKVALAR 184
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BLAST of mRNA_H-elongata_contig69304.14578.1 vs. uniprot
Match: A0A6H5L0T6_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0T6_9PHAE)

HSP 1 Score: 151 bits (381), Expect = 3.120e-40
Identity = 69/104 (66.35%), Postives = 82/104 (78.85%), Query Frame = 1 
Query:    1 AAMYNNDALGGRESAACAHDKNSVNALKLVRNKAWNQVLNVCTIFHLALPILEIQRCLPCFGPQKLQTPSGLDSVLVGWRPTPLGSMWLECFLCFLYMYDLYQV 312
            A++Y  DAL GRES  C H++NS+ ALKLVRNKAWNQ+LN+CTI HL LPI+EIQRCLPC G QK+      +S+  GWRPT LGSMWLEC LC LY+YDLY+V
Sbjct:  139 ASIYVKDALAGRESPTCMHNQNSLRALKLVRNKAWNQLLNICTIVHLMLPIVEIQRCLPCMGMQKIPESLDSNSLHTGWRPTLLGSMWLECLLCLLYVYDLYKV 242
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BLAST of mRNA_H-elongata_contig69304.14578.1 vs. uniprot
Match: D7FGS0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGS0_ECTSI)

HSP 1 Score: 125 bits (314), Expect = 1.950e-32
Identity = 56/108 (51.85%), Postives = 74/108 (68.52%), Query Frame = 1 
Query:    1 AAMYNNDALGGRESAACAHDKNSVNALKLVRNKAWNQVLNVCTIFHLALPILEIQRCLPCFGPQKLQTPSGLDSVLVGWRPTPLGSMWLECFLCFLYMYDLYQVYVSR 324
            AA Y  DAL GR+S+AC H++ S+ ALK  RN AWN +LN+CT+ HL LP++EIQRCL C GP +       +++ +GWRPT LGS+W+EC LC  Y   L Q  +SR
Sbjct:  123 AATYVRDALAGRDSSACIHNERSIRALKWFRNDAWNSLLNICTLVHLILPMVEIQRCLSCMGPHRRSASLEDNTLFLGWRPTSLGSLWIECVLCVFYTCHLRQEALSR 230
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BLAST of mRNA_H-elongata_contig69304.14578.1 vs. uniprot
Match: A0A6H5JGA6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGA6_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 3.730e-23
Identity = 43/81 (53.09%), Postives = 57/81 (70.37%), Query Frame = 1 
Query:    1 AAMYNNDALGGRESAACAHDKNSVNALKLVRNKAWNQVLNVCTIFHLALPILEIQRCLPCFGPQKLQTPSGLDSVLVGWRP 243
            AA+Y  DAL GR+S+AC H++ S+ ALK  RN AWN +LNVCT+ HL LP++EIQRCL C GP K       +++ +G RP
Sbjct:   19 AAIYVRDALAGRDSSACIHNERSIRALKCFRNDAWNSLLNVCTLVHLTLPMVEIQRCLSCVGPHKRSASLEDNTLFLGIRP 99
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BLAST of mRNA_H-elongata_contig69304.14578.1 vs. uniprot
Match: A0A836CJB1_9STRA (Ion_trans domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJB1_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 2.640e-7
Identity = 35/111 (31.53%), Postives = 59/111 (53.15%), Query Frame = 1 
Query:   19 DALGGRESAACAHDKNSVNALKLVRNKAWNQVLNVCTIFHLALPILEIQRCLPCF-GPQKLQTPSGL------DSV--LVGWRPTPLGSMWLECFLCFLYMYDLYQVYVSR 324
            DA+ GR+  A  H +  ++A++L R +    + NV   F L LP++E+     C  G  +     G+      DS+   VGWRPT LGS WLE  +C  +++++  +++ R
Sbjct:  151 DAMHGRKIIAHIHTQRQLSAVRLARARPIILIFNVLCFFQLLLPLIEMPMGWECREGAVRSIQDGGVLCELDGDSLAWFVGWRPTMLGSSWLELPICAFFLFEIALLFMIR 261
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig69304.14578.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FR41_ECTSI1.390e-4165.74Voltage-gated Ion Channel (VIC) Superfamily n=1 Ta... [more]
A0A6H5L0T6_9PHAE3.120e-4066.35Ion_trans domain-containing protein n=1 Tax=Ectoca... [more]
D7FGS0_ECTSI1.950e-3251.85Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JGA6_9PHAE3.730e-2353.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CJB1_9STRA2.640e-731.53Ion_trans domain-containing protein n=1 Tax=Tribon... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig69304contigH-elongata_contig69304:1756..3007 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionIon transport domain
Ec32 orthologEc-09_003590.4
Exons3
Model size324
Cds size318
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig69304.14578.1prot_H-elongata_contig69304.14578.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig69304 1762..3007 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931090.2491736-UTR-H-elongata_contig69304:1755..17611622931090.2491736-UTR-H-elongata_contig69304:1755..1761Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig69304 1756..1761 +
1691679693.782273-UTR-H-elongata_contig69304:1755..17611691679693.782273-UTR-H-elongata_contig69304:1755..1761Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig69304 1756..1761 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931090.3057892-CDS-H-elongata_contig69304:1761..18391622931090.3057892-CDS-H-elongata_contig69304:1761..1839Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69304 1762..1839 +
1691679693.795437-CDS-H-elongata_contig69304:1761..18391691679693.795437-CDS-H-elongata_contig69304:1761..1839Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69304 1762..1839 +
1622931090.3323567-CDS-H-elongata_contig69304:2368..25161622931090.3323567-CDS-H-elongata_contig69304:2368..2516Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69304 2369..2516 +
1691679693.8053446-CDS-H-elongata_contig69304:2368..25161691679693.8053446-CDS-H-elongata_contig69304:2368..2516Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69304 2369..2516 +
1622931090.3540194-CDS-H-elongata_contig69304:2915..30071622931090.3540194-CDS-H-elongata_contig69304:2915..3007Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69304 2916..3007 +
1691679693.8154485-CDS-H-elongata_contig69304:2915..30071691679693.8154485-CDS-H-elongata_contig69304:2915..3007Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69304 2916..3007 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig69304.14578.1

>prot_H-elongata_contig69304.14578.1 ID=prot_H-elongata_contig69304.14578.1|Name=mRNA_H-elongata_contig69304.14578.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=106bp
MYNNDALGGRESAACAHDKNSVNALKLVRNKAWNQVLNVCTIFHLALPIL
EIQRCLPCFGPQKLQTPSGLDSVLVGWRPTPLGSMWLECFLCFLYMYDLY
QVYVSR
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mRNA from alignment at H-elongata_contig69304:1756..3007+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig69304.14578.1 ID=mRNA_H-elongata_contig69304.14578.1|Name=mRNA_H-elongata_contig69304.14578.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1252bp|location=Sequence derived from alignment at H-elongata_contig69304:1756..3007+ (Himanthalia elongata Himel1 dioecious)
GCGGCCATGTACAACAACGATGCGCTCGGCGGGAGAGAAAGCGCGGCCTG
CGCCCACGACAAGAATTCTGTCAACGCCTTGAAGGTGGGTGGGTGGTAAA
TGTTTTCCAAAGTAAAATAGCTGTACATTGTTAACGTGGGAAACGAACGC
GTATCTTAGCAAAGCAAAAAAGGCGAGCTCTCTTTGTCCTACTTCCGGAG
CCCACAGTGCCGTACGGAGCAGCTCATCATTTACTTTCATATGTGTATTT
GGCTGCACCGGGGAATGCTGGATCTACCCCCCCCCCCCTCTCACTTTTGC
GTCACATCGATGACGTCATCCGAGCTTTTGCCGCGACAGATTTGGTTCAA
CCGTAGAATCGAGAGAGGTGTCGGTGATACGCTCAACATCCGCTTCTTTT
TTTGGAAAGGACGATGTGGACTCTCCGTTATTGAGCTGTACAACGCTGAT
ATCGCGAATCACGCAGGCATCGAAATAATTGGTAGGATCCGGGACGACTC
AACATCCCCACACGCTCGCTTCGACTCGCGTCTTCCCTTGCGTTTGTCCA
TGATTCGTCTGCCGCCCCTCGGTCTTCAACGGCACACCGCGTTCTCGCGG
GTGACACCATCAGCTCGTTCGCAACAAGGCTTGGAACCAAGTGCTGAACG
TGTGCACCATATTTCATCTCGCGCTGCCGATCTTGGAGATCCAGAGATGC
CTTCCGTGCTTCGGTCCTCAGAAGCTGCAAACCCCGTCGGGGCTCGACTC
AGTGCTTGTCGGTGAGAGACGAAGCCTGGGTCGGTATACCGAGTACCCGG
AGTTTTAATGGACGGAGTGGGTGAACGTTGCATCCGGCGGGTGGGGTAAC
GCGAGCCGCGAAGGTGTCGCGTGGGGGTTTGGCGTTGTCAACCGTGGTCG
CGAATCGCTTGTTCGTGTTCTTTGTTTTTTCATATTTTTGTTGTTATTTC
TTTTGTATTTTTCCTTTTTGCCTTTCCTTTAAAGAAAAAAAAAGTTTTTT
CGTTTGTTCCCCTTGTCTTTTAGTTTTAGGAAAAAAATAGTTCAAAAATG
AATTCCGTAAAAAAAAACTATTCCATTTTATTTCCTATGAGCGCACCTTG
CCGCCACTTTATTTACACATCTCTCTCTCTCTCTCTCTCGGGAATCGATC
GCTCTAAAAGGTTGGCGGCCGACGCCTCTGGGCTCGATGTGGTTGGAGTG
CTTCCTGTGCTTCCTGTATATGTACGACCTCTACCAAGTCTATGTCTCCA
GG
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Coding sequence (CDS) from alignment at H-elongata_contig69304:1756..3007+

>mRNA_H-elongata_contig69304.14578.1 ID=mRNA_H-elongata_contig69304.14578.1|Name=mRNA_H-elongata_contig69304.14578.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=636bp|location=Sequence derived from alignment at H-elongata_contig69304:1756..3007+ (Himanthalia elongata Himel1 dioecious)
ATGTACAACAACGATGCGCTCGGCGGGAGAGAAAGCGCGGCCTGCGCCCA
CGACAAGAATTCTGTCAACGCCTTGAAGATGTACAACAACGATGCGCTCG
GCGGGAGAGAAAGCGCGGCCTGCGCCCACGACAAGAATTCTGTCAACGCC
TTGAAGCTCGTTCGCAACAAGGCTTGGAACCAAGTGCTGAACGTGTGCAC
CATATTTCATCTCGCGCTGCCGATCTTGGAGATCCAGAGATGCCTTCCGT
GCTTCGGTCCTCAGAAGCTGCAAACCCCGTCGGGGCTCGACTCAGTGCTT
GTCGCTCGTTCGCAACAAGGCTTGGAACCAAGTGCTGAACGTGTGCACCA
TATTTCATCTCGCGCTGCCGATCTTGGAGATCCAGAGATGCCTTCCGTGC
TTCGGTCCTCAGAAGCTGCAAACCCCGTCGGGGCTCGACTCAGTGCTTGT
CGGTTGGCGGCCGACGCCTCTGGGCTCGATGTGGTTGGAGTGCTTCCTGT
GCTTCCTGTATATGTACGACCTCTACCAAGTCTATGTCTCCAGGGTTGGC
GGCCGACGCCTCTGGGCTCGATGTGGTTGGAGTGCTTCCTGTGCTTCCTG
TATATGTACGACCTCTACCAAGTCTATGTCTCCAGG
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