prot_H-elongata_contig69292.14577.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig69292.14577.1
Unique Nameprot_H-elongata_contig69292.14577.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length104
Homology
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BLAST of mRNA_H-elongata_contig69292.14577.1 vs. uniprot
Match: A0A6H5J832_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J832_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 2.370e-21
Identity = 61/104 (58.65%), Postives = 74/104 (71.15%), Query Frame = 0 
Query:    1 LQGISCIFSAFAGMGAGRLASTGGQFKLLLAAALSLAIITVTVALAIEDNFDVVGWEESGCNKGKRGAKKAPGGLLTVLRASVSLFRRSPLLAALLVEAVVCQV 104
            +QG+SCI SAF+G+ AGRLA+ GGQ  LLLAAALSL  ITVT            G+E+    +GK G KK+  G+L+VLR+S SLFR+SPLLAALL EA VCQV
Sbjct:  143 IQGVSCICSAFSGVAAGRLATAGGQAYLLLAAALSLGTITVTAVALTPVKAGGWGFEKV---EGKTGKKKSDHGMLSVLRSSASLFRQSPLLAALLAEATVCQV 243
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig69292.14577.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5J832_9PHAE2.370e-2158.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..27
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 48..104
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 28..47
NoneNo IPR availableTMHMMTMhelixcoord: 28..47

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig69292contigH-elongata_contig69292:2327..3034 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig69292.14577.1mRNA_H-elongata_contig69292.14577.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig69292 2327..3034 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig69292.14577.1 ID=prot_H-elongata_contig69292.14577.1|Name=mRNA_H-elongata_contig69292.14577.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=104bp
LQGISCIFSAFAGMGAGRLASTGGQFKLLLAAALSLAIITVTVALAIEDN
FDVVGWEESGCNKGKRGAKKAPGGLLTVLRASVSLFRRSPLLAALLVEAV
VCQV
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